Wall clock time and date at job start Sat Apr 11 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00573 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00033 * 3 2 1 5 5 H 1.48504 * 109.46827 * 29.99426 * 3 2 1 6 6 H 1.48499 * 109.47632 * 149.99678 * 3 2 1 7 7 C 1.38819 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00060 * 174.38243 * 7 2 1 9 9 N 1.36934 * 119.99820 * 354.38322 * 7 2 1 10 10 C 1.44349 * 116.42399 * 334.85224 * 9 7 2 11 11 C 1.51575 * 113.01496 * 188.03280 * 10 9 7 12 12 C 1.52915 * 111.66071 * 320.12359 * 11 10 9 13 13 H 1.09005 * 112.47245 * 293.93215 * 12 11 10 14 14 C 1.55411 * 106.56894 * 169.88811 * 12 11 10 15 15 N 1.47385 * 106.74045 * 270.99678 * 14 12 11 16 16 C 1.34770 * 125.73949 * 179.03132 * 15 14 12 17 17 O 1.21574 * 120.00699 * 6.02350 * 16 15 14 18 18 C 1.47694 * 119.99498 * 186.03009 * 16 15 14 19 19 C 1.39988 * 120.38012 * 204.05193 * 18 16 15 20 20 N 1.31384 * 121.15481 * 180.02562 * 19 18 16 21 21 C 1.32546 * 121.79426 * 359.97438 * 20 19 18 22 22 N 1.37589 * 133.56219 * 180.02562 * 21 20 19 23 23 H 0.96997 * 126.23928 * 359.97438 * 22 21 20 24 24 C 1.36170 * 107.51951 * 179.97438 * 22 21 20 25 25 N 1.30057 * 110.11509 * 0.02562 * 24 22 21 26 26 C 1.35773 * 109.43686 * 359.97438 * 25 24 22 27 27 C 1.39483 * 133.75083 * 180.02562 * 26 25 24 28 28 C 1.47936 * 108.51572 * 359.28795 * 15 14 12 29 29 C 1.54099 * 109.62689 * 60.86247 * 12 11 10 30 30 H 1.09000 * 109.19091 * 187.52554 * 29 12 11 31 31 C 1.43976 * 116.42662 * 154.87906 * 9 7 2 32 32 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 33 33 H 1.09005 * 108.77484 * 67.12085 * 10 9 7 34 34 H 1.09002 * 108.68716 * 308.88084 * 10 9 7 35 35 H 1.09003 * 109.04056 * 199.56409 * 11 10 9 36 36 H 1.08994 * 108.98364 * 80.64511 * 11 10 9 37 37 H 1.08997 * 110.01056 * 151.67183 * 14 12 11 38 38 H 1.09008 * 110.00480 * 30.31235 * 14 12 11 39 39 H 1.07999 * 119.42290 * 0.04331 * 19 18 16 40 40 H 1.07994 * 124.93784 * 179.97438 * 24 22 21 41 41 H 1.07998 * 120.97069 * 359.95343 * 27 26 25 42 42 H 1.09004 * 110.56423 * 93.91509 * 28 15 14 43 43 H 1.08997 * 110.56848 * 216.77513 * 28 15 14 44 44 H 1.09004 * 108.11333 * 304.64198 * 31 9 7 45 45 H 1.09001 * 108.11519 * 61.30900 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0863 -1.2045 -0.0910 9 7 1.3304 -2.3852 0.1171 10 6 0.0472 -2.3264 0.7755 11 6 -0.5487 -3.6957 1.0356 12 6 -0.3140 -4.6458 -0.1393 13 1 -0.8456 -4.3353 -1.0389 14 6 -0.7303 -6.0622 0.3462 15 7 0.4669 -6.6723 0.9518 16 6 0.5284 -7.8959 1.5133 17 8 -0.4299 -8.6416 1.4527 18 6 1.7601 -8.3310 2.2024 19 6 2.0488 -9.6935 2.3435 20 7 3.1397 -10.0975 2.9541 21 6 4.0139 -9.2404 3.4620 22 7 5.2059 -9.3875 4.1333 23 1 5.6350 -10.2266 4.3627 24 6 5.6733 -8.1404 4.4170 25 7 4.8494 -7.2407 3.9661 26 6 3.7984 -7.8526 3.3624 27 6 2.6504 -7.3879 2.7208 28 6 1.5880 -5.7131 0.8451 29 6 1.1996 -4.8310 -0.3609 30 1 1.3608 -5.3987 -1.2773 31 6 1.9744 -3.5509 -0.4299 32 1 -0.4850 0.8401 -0.0004 33 1 -0.6416 -1.7569 0.1514 34 1 0.1664 -1.8091 1.7275 35 1 -1.6212 -3.5914 1.2000 36 1 -0.0913 -4.1172 1.9307 37 1 -1.0676 -6.6621 -0.4991 38 1 -1.5247 -5.9835 1.0886 39 1 1.3629 -10.4254 1.9433 40 1 6.5937 -7.9292 4.9409 41 1 2.4553 -6.3297 2.6281 42 1 1.6662 -5.1131 1.7517 43 1 2.5234 -6.2375 0.6499 44 1 2.2054 -3.3509 -1.4762 45 1 2.9154 -3.6984 0.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087980184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:55 Heat of formation + Delta-G solvation = 80.287107 kcal Electronic energy + Delta-G solvation = -29811.738631 eV Core-core repulsion = 25830.600548 eV Total energy + Delta-G solvation = -3981.138083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.46008 -41.75761 -40.08309 -38.84396 -37.32918 -35.07581 -34.20451 -33.25467 -32.48595 -31.72825 -30.93588 -29.30952 -27.32821 -25.97818 -25.21173 -24.44446 -23.57845 -23.09820 -22.59828 -20.84007 -19.98960 -19.28081 -18.90632 -18.61126 -18.03708 -17.28234 -16.93007 -16.79570 -16.71420 -16.57503 -15.86208 -15.61242 -15.24151 -15.10157 -14.98918 -14.80774 -14.63493 -14.20877 -13.94994 -13.79429 -13.62154 -13.51850 -13.30531 -12.98250 -12.77334 -12.50016 -12.33403 -12.19131 -12.14962 -12.01796 -11.68601 -11.45538 -11.32578 -11.23541 -11.15312 -10.52130 -10.40526 -10.09381 -9.81472 -9.66509 -8.66350 -7.54429 -5.32476 -0.48669 -0.27695 1.48896 1.49571 1.50089 1.59075 1.59440 1.76277 1.80331 2.53376 2.62867 2.91803 3.26302 3.31346 3.34595 3.46559 3.59894 3.65801 3.75289 3.80021 3.86397 4.12726 4.16044 4.20943 4.29639 4.45331 4.50152 4.63317 4.64913 4.69613 4.74028 4.79804 4.88813 4.91785 5.00114 5.06074 5.11493 5.21941 5.29474 5.34872 5.35587 5.56410 5.75118 6.11189 6.13083 6.31958 6.55227 6.59346 6.69371 6.93043 7.30619 8.13572 8.28233 9.20851 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003142 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.580290 B = 8909.867804 C =10613.493447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.273 4.273 8 H 0.067 0.933 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.118 4.118 12 C -0.075 4.075 13 H 0.102 0.898 14 C 0.117 3.883 15 N -0.608 5.608 16 C 0.586 3.414 17 O -0.566 6.566 18 C -0.197 4.197 19 C 0.192 3.808 20 N -0.491 5.491 21 C 0.244 3.756 22 N -0.574 5.574 23 H 0.448 0.552 24 C 0.306 3.694 25 N -0.527 5.527 26 C -0.024 4.024 27 C 0.005 3.995 28 C 0.112 3.888 29 C -0.095 4.095 30 H 0.098 0.902 31 C 0.176 3.824 32 H 0.245 0.755 33 H 0.065 0.935 34 H -0.018 1.018 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.190 0.810 40 H 0.282 0.718 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 -20.308 6.726 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.403 4.403 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.156 4.156 12 C -0.094 4.094 13 H 0.120 0.880 14 C -0.005 4.005 15 N -0.340 5.340 16 C 0.376 3.624 17 O -0.446 6.446 18 C -0.205 4.205 19 C 0.023 3.977 20 N -0.204 5.204 21 C 0.005 3.995 22 N -0.190 5.190 23 H 0.292 0.708 24 C 0.019 3.981 25 N -0.247 5.247 26 C -0.143 4.143 27 C -0.022 4.022 28 C -0.011 4.011 29 C -0.114 4.114 30 H 0.116 0.884 31 C 0.051 3.949 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.001 0.999 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.206 0.794 40 H 0.297 0.703 41 H 0.172 0.828 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.327 -20.672 6.919 23.711 hybrid contribution 0.204 1.056 0.098 1.080 sum 9.531 -19.616 7.018 22.910 Atomic orbital electron populations 1.70145 1.06172 1.24640 1.56839 1.25859 0.96298 1.01194 1.01015 0.85252 0.77880 0.79655 0.77554 1.21020 1.22051 1.19779 1.19599 0.91123 0.85379 1.44212 0.91500 1.42957 1.19885 1.04138 1.66245 1.20228 0.87361 0.92883 0.94449 1.21663 1.00783 0.95881 0.97247 1.22013 0.95594 0.92871 0.98961 0.87957 1.22388 0.87075 0.92865 0.98131 1.48577 1.13193 1.14800 1.57411 1.17638 0.86858 0.79970 0.77918 1.90768 1.38792 1.53448 1.61640 1.20477 0.97137 0.95778 1.07124 1.22873 0.91064 0.93058 0.90726 1.66576 1.03297 1.37751 1.12753 1.19466 0.90647 0.91510 0.97830 1.42970 1.16757 1.12117 1.47143 0.70830 1.26699 0.99664 0.76632 0.95153 1.70557 1.03735 1.33331 1.17029 1.19754 0.97704 0.91693 1.05156 1.21512 0.89024 1.01281 0.90381 1.22746 0.89843 0.89995 0.98468 1.21566 0.95441 0.95559 0.98814 0.88357 1.19281 0.94104 0.85577 0.95978 0.94456 0.91746 0.99938 0.91151 0.93416 0.90140 0.90962 0.79358 0.70286 0.82847 0.91126 0.88865 0.96558 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 9.92 21.65 0.21 -53.50 16 2 C -0.05 -2.71 5.27 84.86 0.45 -2.26 16 3 Si 0.97 44.69 29.56 68.60 2.03 46.72 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.27 -14.83 9.41 84.04 0.79 -14.04 16 8 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.61 -29.65 3.25 -722.41 -2.35 -32.00 16 10 C 0.18 8.43 4.74 86.31 0.41 8.84 16 11 C -0.12 -4.24 4.78 30.10 0.14 -4.10 16 12 C -0.08 -2.29 3.65 -9.62 -0.04 -2.33 16 13 H 0.10 3.11 8.14 -2.38 -0.02 3.10 16 14 C 0.12 3.15 6.25 87.04 0.54 3.69 16 15 N -0.61 -16.63 3.34 -812.00 -2.71 -19.34 16 16 C 0.59 16.81 7.65 86.74 0.66 17.47 16 17 O -0.57 -18.95 16.94 -3.95 -0.07 -19.02 16 18 C -0.20 -5.00 5.69 -20.01 -0.11 -5.11 16 19 C 0.19 4.43 10.74 85.18 0.91 5.35 16 20 N -0.49 -11.16 10.36 -191.75 -1.99 -13.14 16 21 C 0.24 5.13 8.45 133.91 1.13 6.26 16 22 N -0.57 -6.47 6.20 -195.73 -1.21 -7.69 16 23 H 0.45 1.67 8.96 -92.71 -0.83 0.84 16 24 C 0.31 3.23 12.97 180.03 2.33 5.56 16 25 N -0.53 -11.49 11.29 -191.95 -2.17 -13.66 16 26 C -0.02 -0.58 7.23 39.46 0.29 -0.30 16 27 C 0.01 0.13 8.23 22.92 0.19 0.32 16 28 C 0.11 3.00 3.72 86.57 0.32 3.33 16 29 C -0.09 -2.85 2.84 -10.99 -0.03 -2.88 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 C 0.18 6.88 5.75 85.82 0.49 7.37 16 32 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.07 3.55 5.70 -2.38 -0.01 3.54 16 34 H -0.02 -0.96 8.00 -2.39 -0.02 -0.98 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.05 1.68 6.60 -2.39 -0.02 1.67 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.96 7.79 -2.38 -0.02 1.94 16 39 H 0.19 3.77 7.82 -2.91 -0.02 3.75 16 40 H 0.28 -0.58 8.06 -2.91 -0.02 -0.60 16 41 H 0.15 3.97 4.68 -2.91 -0.01 3.96 16 42 H 0.07 2.09 5.91 -2.38 -0.01 2.07 16 43 H 0.09 2.25 6.83 -2.39 -0.02 2.23 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.02 0.67 7.80 -2.39 -0.02 0.65 16 Total: -1.00 -75.15 354.55 0.46 -74.70 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.22 Total: 9.74 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 8.49 Total: 27.19 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -10.21 Total: -139.32 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.02 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.15 0.46 -74.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087980184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.983 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds