Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99787 * 2 1 4 4 H 1.48506 * 109.47021 * 271.45893 * 3 2 1 5 5 H 1.48503 * 109.47560 * 31.46045 * 3 2 1 6 6 H 1.48498 * 109.47220 * 151.45996 * 3 2 1 7 7 C 1.38807 * 119.99909 * 180.27742 * 2 1 3 8 8 H 1.07997 * 119.99889 * 343.83572 * 7 2 1 9 9 N 1.36944 * 119.99781 * 163.84230 * 7 2 1 10 10 C 1.47230 * 121.38862 * 325.86406 * 9 7 2 11 11 C 1.52752 * 107.70541 * 238.34005 * 10 9 7 12 12 C 1.53084 * 110.93420 * 302.04689 * 11 10 9 13 13 H 1.09002 * 112.14862 * 288.29563 * 12 11 10 14 14 C 1.55407 * 106.23234 * 164.37366 * 12 11 10 15 15 N 1.47185 * 106.93347 * 268.76858 * 14 12 11 16 16 C 1.34781 * 125.65085 * 178.82396 * 15 14 12 17 17 O 1.21629 * 119.99686 * 355.06017 * 16 15 14 18 18 C 1.47206 * 120.00028 * 175.06641 * 16 15 14 19 19 C 1.37750 * 119.93693 * 20.71497 * 18 16 15 20 20 C 1.39866 * 119.92810 * 180.02562 * 19 18 16 21 21 C 1.36300 * 119.81605 * 359.97438 * 20 19 18 22 22 C 1.40772 * 119.71302 * 0.02562 * 21 20 19 23 23 N 1.32822 * 132.74259 * 179.97438 * 22 21 20 24 24 C 1.32367 * 109.74257 * 179.97438 * 23 22 21 25 25 N 1.31395 * 109.61663 * 0.02562 * 24 23 22 26 26 N 1.36553 * 119.87647 * 359.71896 * 22 21 20 27 27 C 1.47843 * 108.69879 * 358.83833 * 15 14 12 28 28 C 1.53853 * 103.99247 * 336.64872 * 27 15 14 29 29 H 1.08997 * 109.15797 * 283.00705 * 28 27 15 30 30 C 1.46705 * 121.39112 * 145.58854 * 9 7 2 31 31 H 0.97002 * 120.00416 * 359.72126 * 1 2 3 32 32 H 1.08991 * 109.81740 * 357.89326 * 10 9 7 33 33 H 1.09002 * 109.80860 * 118.73439 * 10 9 7 34 34 H 1.08992 * 109.18787 * 62.42405 * 11 10 9 35 35 H 1.09003 * 109.18444 * 181.67680 * 11 10 9 36 36 H 1.08997 * 109.97073 * 28.14064 * 14 12 11 37 37 H 1.09002 * 109.96560 * 149.39954 * 14 12 11 38 38 H 1.08004 * 120.04199 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.09136 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.13983 * 179.97438 * 21 20 19 41 41 H 1.07997 * 125.18876 * 179.97438 * 24 23 22 42 42 H 1.09006 * 110.52700 * 218.01882 * 27 15 14 43 43 H 1.08999 * 110.64539 * 95.33206 * 27 15 14 44 44 H 1.09000 * 109.12075 * 248.29785 * 30 9 7 45 45 H 1.09001 * 109.12602 * 7.38802 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4667 2.0643 -1.3997 5 1 1.4634 2.6436 0.7307 6 1 3.5627 1.4315 0.6689 7 6 2.0102 -1.2021 -0.0058 8 1 1.5022 -2.1201 0.2501 9 7 3.3390 -1.2239 -0.3360 10 6 3.8954 -0.3002 -1.3385 11 6 4.5279 -1.1419 -2.4452 12 6 5.6093 -2.0660 -1.8794 13 1 6.5026 -1.5179 -1.5798 14 6 5.8890 -3.1302 -2.9767 15 7 4.9908 -4.2657 -2.7116 16 6 4.9052 -5.3890 -3.4515 17 8 5.5429 -5.4882 -4.4825 18 6 4.0398 -6.4958 -3.0119 19 6 3.0161 -6.2561 -2.1220 20 6 2.1943 -7.3079 -1.7040 21 6 2.4099 -8.5668 -2.1800 22 6 3.4594 -8.7987 -3.0891 23 7 3.8944 -9.8929 -3.7036 24 6 4.9282 -9.5922 -4.4737 25 7 5.1893 -8.3079 -4.3799 26 7 4.2511 -7.7620 -3.4930 27 6 4.1978 -3.9698 -1.4995 28 6 5.0501 -2.9384 -0.7400 29 1 5.8744 -3.4510 -0.2443 30 6 4.2688 -2.1645 0.2988 31 1 -0.4851 0.8400 0.0041 32 1 3.0993 0.3177 -1.7535 33 1 4.6524 0.3337 -0.8768 34 1 3.7554 -1.7448 -2.9226 35 1 4.9746 -0.4803 -3.1875 36 1 5.6806 -2.7129 -3.9618 37 1 6.9276 -3.4566 -2.9225 38 1 2.8480 -5.2572 -1.7473 39 1 1.3912 -7.1231 -1.0060 40 1 1.7788 -9.3829 -1.8604 41 1 5.4742 -10.2954 -5.0851 42 1 4.0644 -4.8707 -0.9006 43 1 3.2310 -3.5436 -1.7673 44 1 4.9617 -1.6096 0.9313 45 1 3.7041 -2.8629 0.9165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088029246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = 146.495751 kcal Electronic energy + Delta-G solvation = -30297.881987 eV Core-core repulsion = 26319.614926 eV Total energy + Delta-G solvation = -3978.267061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.87326 -40.69894 -38.72110 -37.68381 -35.73147 -33.72054 -32.94993 -31.81015 -31.16774 -30.88769 -30.07860 -27.82048 -26.47121 -25.03284 -23.83956 -23.38412 -22.63747 -22.41092 -21.47212 -19.79582 -18.96136 -18.09261 -17.64643 -17.16554 -16.71938 -16.47635 -16.13029 -15.88424 -15.47109 -15.29800 -14.54211 -14.34483 -14.07803 -13.79995 -13.73063 -13.25901 -13.20695 -12.92702 -12.80967 -12.76918 -12.42402 -12.28926 -12.01103 -11.80956 -11.72767 -11.41549 -11.37463 -10.97988 -10.89509 -10.64680 -10.29951 -10.26420 -10.09765 -9.97072 -9.75844 -9.73037 -9.60390 -8.80426 -8.70458 -8.50437 -7.03692 -6.07839 -3.52265 -0.00687 0.71631 1.68523 2.24990 2.70334 2.79817 3.19476 3.23218 3.39856 3.41839 3.70993 3.87433 4.15503 4.41834 4.43552 4.53028 4.64019 4.65518 4.77051 4.89497 4.95355 5.05546 5.20916 5.25701 5.38082 5.44188 5.49048 5.61306 5.65734 5.69429 5.81583 5.84208 5.86813 5.96730 6.04236 6.11651 6.16523 6.19737 6.21785 6.26833 6.38585 6.42755 6.48909 6.55943 6.78926 7.25979 7.73644 7.87081 7.89765 8.21288 8.78952 9.57539 9.99752 11.07662 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.003246 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.695237 B = 8625.240870 C = 9646.343978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.123 3.877 11 C -0.130 4.130 12 C -0.085 4.085 13 H 0.095 0.905 14 C 0.114 3.886 15 N -0.602 5.602 16 C 0.569 3.431 17 O -0.508 6.508 18 C 0.101 3.899 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.085 4.085 22 C 0.272 3.728 23 N -0.544 5.544 24 C 0.223 3.777 25 N -0.309 5.309 26 N -0.261 5.261 27 C 0.087 3.913 28 C -0.109 4.109 29 H 0.073 0.927 30 C 0.156 3.844 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.191 0.809 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.226 0.774 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.029 0.971 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -12.198 -1.919 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.716 3.284 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.002 4.002 11 C -0.170 4.170 12 C -0.104 4.104 13 H 0.114 0.886 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.355 3.645 17 O -0.383 6.383 18 C -0.011 4.011 19 C -0.153 4.153 20 C -0.092 4.092 21 C -0.107 4.107 22 C 0.018 3.982 23 N -0.274 5.274 24 C -0.077 4.077 25 N -0.139 5.139 26 N -0.038 5.038 27 C -0.034 4.034 28 C -0.130 4.130 29 H 0.091 0.909 30 C 0.030 3.970 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.208 0.792 39 H 0.180 0.820 40 H 0.179 0.821 41 H 0.242 0.758 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.047 0.953 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.806 -12.332 -3.005 15.448 hybrid contribution 0.307 0.984 -0.025 1.031 sum 9.113 -11.348 -3.030 14.866 Atomic orbital electron populations 1.69779 1.05798 1.26785 1.52562 1.25422 0.95209 0.97828 0.98492 0.86866 0.79958 0.84348 0.77183 1.21508 1.23140 1.19418 1.18785 0.82504 0.94078 1.43840 0.89792 1.44330 1.05669 1.40017 1.42801 1.21329 0.96809 0.92487 0.89576 1.22063 0.97497 0.98582 0.98821 1.22192 0.99262 0.95072 0.93852 0.88650 1.22394 0.93075 0.85589 0.99705 1.48368 1.40616 1.16636 1.27990 1.17037 0.82349 0.81101 0.84043 1.90902 1.44617 1.80099 1.22634 1.20048 0.99370 0.83437 0.98278 1.22700 0.93192 1.03826 0.95537 1.21347 0.98620 0.90984 0.98217 1.20543 0.95444 0.99124 0.95542 1.21910 0.94775 0.83759 0.97729 1.70808 1.15785 1.25056 1.15781 1.26292 0.93121 0.92089 0.96199 1.78972 1.11868 1.10372 1.12732 1.47594 1.21284 1.06732 1.28151 1.22948 0.96557 0.98792 0.85106 1.22079 0.98326 0.95892 0.96700 0.90854 1.20336 0.92285 0.92430 0.91998 0.92614 0.90955 0.95311 0.91472 0.92608 0.90829 0.91603 0.79248 0.81963 0.82057 0.75790 0.89663 0.88236 0.95265 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.79 13.97 55.49 0.78 -25.01 16 2 C 0.03 0.81 5.31 -17.43 -0.09 0.71 16 3 Si 0.89 20.78 24.48 -169.99 -4.16 16.62 16 4 H -0.29 -6.56 6.64 56.52 0.38 -6.19 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.27 -6.15 6.74 56.52 0.38 -5.77 16 7 C -0.26 -6.43 10.07 -15.06 -0.15 -6.58 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 9 N -0.60 -12.06 2.57 -173.67 -0.45 -12.51 16 10 C 0.12 2.31 4.21 -3.77 -0.02 2.30 16 11 C -0.13 -1.96 4.79 -26.81 -0.13 -2.09 16 12 C -0.08 -1.07 3.61 -88.77 -0.32 -1.39 16 13 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.11 1.46 6.18 -2.39 -0.01 1.45 16 15 N -0.60 -8.16 3.34 -171.36 -0.57 -8.74 16 16 C 0.57 8.95 7.74 -12.62 -0.10 8.85 16 17 O -0.51 -9.78 16.55 5.25 0.09 -9.69 16 18 C 0.10 1.41 6.72 -82.05 -0.55 0.85 16 19 C -0.13 -1.36 8.07 -39.15 -0.32 -1.68 16 20 C -0.07 -0.54 10.04 -39.67 -0.40 -0.94 16 21 C -0.09 -0.80 10.09 -39.32 -0.40 -1.19 16 22 C 0.27 3.62 7.88 -156.37 -1.23 2.39 16 23 N -0.54 -7.52 11.24 -13.99 -0.16 -7.67 16 24 C 0.22 2.90 12.98 -92.00 -1.19 1.71 16 25 N -0.31 -4.99 11.91 29.25 0.35 -4.64 16 26 N -0.26 -3.97 3.91 -8.82 -0.03 -4.00 16 27 C 0.09 1.06 3.96 -2.86 -0.01 1.05 16 28 C -0.11 -1.37 2.81 -90.52 -0.25 -1.63 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 C 0.16 2.44 5.97 -4.80 -0.03 2.41 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 1.54 4.72 -51.93 -0.25 1.29 16 33 H 0.03 0.53 7.37 -51.93 -0.38 0.15 16 34 H 0.07 1.10 7.08 -51.93 -0.37 0.73 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.98 7.74 -51.93 -0.40 0.58 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.19 1.84 3.83 -52.48 -0.20 1.63 16 39 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.23 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.09 0.86 5.74 -51.93 -0.30 0.56 16 43 H 0.10 1.38 6.89 -51.93 -0.36 1.03 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 1.03 7.94 -51.93 -0.41 0.61 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -33.95 351.44 -9.72 -43.67 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.65 Total: 0.44 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -5.20 Total: 6.24 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.09 Total: -62.57 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.16 Total: 16.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.95 -9.72 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088029246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.168 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds