Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99776 * 2 1 4 4 H 1.48502 * 109.46625 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47174 * 29.99833 * 3 2 1 6 6 H 1.48499 * 109.47086 * 149.99941 * 3 2 1 7 7 C 1.38812 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00069 * 180.02562 * 9 7 2 11 11 C 1.53786 * 113.61294 * 155.00309 * 10 9 7 12 12 C 1.53784 * 87.08102 * 89.11861 * 11 10 9 13 13 C 1.53002 * 113.61572 * 139.98324 * 12 11 10 14 14 N 1.46496 * 109.47037 * 176.52883 * 13 12 11 15 15 C 1.34777 * 119.99875 * 180.02562 * 14 13 12 16 16 O 1.21605 * 120.00226 * 0.26808 * 15 14 13 17 17 C 1.47416 * 119.99970 * 179.97438 * 15 14 13 18 18 C 1.41321 * 126.40927 * 359.68916 * 17 15 14 19 19 N 1.30479 * 108.06970 * 179.81946 * 18 17 15 20 20 N 1.39945 * 108.90903 * 0.43966 * 19 18 17 21 21 C 1.40170 * 125.76889 * 179.69259 * 20 19 18 22 22 C 1.39269 * 120.48630 * 0.03069 * 21 20 19 23 23 C 1.38508 * 118.36271 * 179.97438 * 22 21 20 24 24 C 1.38271 * 119.23253 * 0.02562 * 23 22 21 25 25 N 1.31864 * 120.91213 * 359.97438 * 24 23 22 26 26 C 1.31825 * 121.79250 * 359.73331 * 25 24 23 27 27 C 1.34532 * 108.45675 * 359.71857 * 20 19 18 28 28 C 1.53775 * 87.17509 * 25.38864 * 12 11 10 29 29 H 0.97000 * 120.00324 * 0.02562 * 1 2 3 30 30 H 0.97011 * 120.00231 * 0.02562 * 9 7 2 31 31 H 1.08998 * 112.85400 * 23.80806 * 10 9 7 32 32 H 1.08998 * 113.61937 * 334.56789 * 11 10 9 33 33 H 1.09004 * 113.61261 * 203.66453 * 11 10 9 34 34 H 1.09001 * 113.61025 * 270.79388 * 12 11 10 35 35 H 1.08996 * 109.47407 * 56.52219 * 13 12 11 36 36 H 1.09000 * 109.46986 * 296.52447 * 13 12 11 37 37 H 0.96999 * 120.00082 * 359.97438 * 14 13 12 38 38 H 1.08004 * 125.96770 * 359.97315 * 18 17 15 39 39 H 1.08003 * 120.81387 * 359.95059 * 22 21 20 40 40 H 1.08001 * 120.38531 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.54825 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.66235 * 180.28763 * 26 25 24 43 43 H 1.08003 * 126.30580 * 180.02562 * 27 20 19 44 44 H 1.08999 * 113.61394 * 89.15714 * 28 12 11 45 45 H 1.09002 * 113.61598 * 220.06313 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 6 1.2603 -4.8282 0.5992 12 6 0.7207 -5.0798 -0.8187 13 6 0.6198 -6.5626 -1.1820 14 7 0.0214 -6.6999 -2.5121 15 6 -0.1674 -7.9243 -3.0429 16 8 0.1546 -8.9152 -2.4158 17 6 -0.7700 -8.0625 -4.3811 18 6 -1.2031 -7.0099 -5.2188 19 7 -1.6734 -7.5342 -6.3172 20 7 -1.5750 -8.9276 -6.2330 21 6 -1.9836 -9.8388 -7.2166 22 6 -2.5451 -9.3873 -8.4085 23 6 -2.9329 -10.3260 -9.3503 24 6 -2.7520 -11.6696 -9.0786 25 7 -2.2172 -12.0645 -7.9398 26 6 -1.8294 -11.2041 -7.0194 27 6 -1.0225 -9.2447 -5.0481 28 6 1.9980 -4.4026 -1.3427 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 3.0657 -3.5634 0.4081 32 1 0.4938 -4.5178 1.3094 33 1 1.8871 -5.6357 0.9775 34 1 -0.1909 -4.5261 -1.0435 35 1 -0.0030 -7.0749 -0.4486 36 1 1.6162 -7.0046 -1.1845 37 1 -0.2396 -5.9097 -3.0104 38 1 -1.1514 -5.9555 -4.9908 39 1 -2.6751 -8.3312 -8.5936 40 1 -3.3714 -10.0121 -10.2860 41 1 -3.0530 -12.4059 -9.8091 42 1 -1.3912 -11.5654 -6.1008 43 1 -0.8143 -10.2406 -4.6856 44 1 2.8269 -5.0935 -1.4963 45 1 1.8263 -3.7491 -2.1980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091066836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 116.425279 kcal Electronic energy + Delta-G solvation = -27267.051020 eV Core-core repulsion = 23287.480006 eV Total energy + Delta-G solvation = -3979.571014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23416 -40.53327 -39.45544 -38.36036 -34.79156 -34.53290 -33.20313 -32.91821 -30.94348 -30.37240 -29.86157 -27.42557 -25.07463 -24.83678 -24.54608 -23.71394 -22.62432 -21.74722 -21.36813 -20.25067 -19.11604 -18.30999 -17.61119 -17.32944 -16.91084 -16.37134 -16.11984 -15.96610 -15.40804 -15.19639 -14.86470 -14.60486 -14.32422 -14.19753 -14.05558 -13.79116 -13.59158 -13.29219 -13.19927 -12.88091 -12.76758 -12.26956 -11.92788 -11.65100 -11.41973 -11.29290 -11.05377 -10.85407 -10.49596 -10.37475 -10.29397 -10.20005 -10.13397 -9.82803 -9.70491 -9.70039 -9.48135 -9.05218 -8.90103 -8.73677 -7.01606 -5.82487 -3.11399 -0.00571 0.51764 1.38290 1.62928 1.79232 3.13709 3.18633 3.29193 3.40632 3.46267 3.47723 3.72713 3.81987 4.00037 4.25674 4.28078 4.42609 4.54353 4.67403 4.75198 4.81129 4.96979 5.04650 5.06870 5.19444 5.31996 5.37030 5.43029 5.44101 5.62343 5.70179 5.76116 5.86454 5.91839 5.97128 6.10808 6.21216 6.36829 6.38901 6.42002 6.58675 6.73741 6.89271 6.96107 7.03481 7.22475 7.51940 7.67604 8.20235 8.36725 9.47530 10.05140 10.39309 11.39889 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.001706 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.285019 B =16405.035948 C =17529.942843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.120 4.120 13 C 0.133 3.867 14 N -0.717 5.717 15 C 0.591 3.409 16 O -0.551 6.551 17 C -0.273 4.273 18 C 0.097 3.903 19 N -0.290 5.290 20 N -0.313 5.313 21 C 0.106 3.894 22 C -0.071 4.071 23 C -0.146 4.146 24 C 0.089 3.911 25 N -0.457 5.457 26 C 0.089 3.911 27 C 0.125 3.875 28 C -0.168 4.168 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.201 0.799 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.194 0.806 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -22.665 -17.045 28.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.054 3.946 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.010 3.990 14 N -0.367 5.367 15 C 0.378 3.622 16 O -0.430 6.430 17 C -0.287 4.287 18 C -0.092 4.092 19 N -0.107 5.107 20 N -0.086 5.086 21 C 0.011 3.989 22 C -0.099 4.099 23 C -0.167 4.167 24 C -0.068 4.068 25 N -0.165 5.165 26 C -0.072 4.072 27 C -0.021 4.021 28 C -0.209 4.209 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.218 0.782 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.211 0.789 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.949 -23.877 -17.581 30.242 hybrid contribution 0.174 2.158 0.286 2.183 sum -5.775 -21.719 -17.295 28.358 Atomic orbital electron populations 1.69655 1.05127 1.25778 1.57490 1.24755 0.95530 0.97765 1.02788 0.86177 0.78690 0.83717 0.77520 1.21710 1.21763 1.20693 1.19294 0.91134 0.83988 1.42937 0.90993 1.42167 1.05671 0.99431 1.87136 1.21100 0.95110 0.85593 0.92765 1.23440 1.00496 0.99685 0.95115 1.22713 0.99589 0.92913 0.98629 1.21493 0.98065 0.97058 0.82406 1.45817 1.63431 1.07632 1.19850 1.17118 0.77742 0.83505 0.83832 1.90778 1.52468 1.37534 1.62260 1.20413 1.16414 0.92506 0.99345 1.24363 0.94240 1.00571 0.90009 1.77284 1.24825 0.85647 1.22928 1.45536 1.45558 1.05128 1.12399 1.18712 1.01440 0.88940 0.89790 1.21449 0.95364 1.02106 0.90962 1.22174 1.00340 0.93675 1.00483 1.22943 0.94934 0.94882 0.94076 1.67799 1.09456 1.37424 1.01771 1.22648 0.98474 0.86494 0.99542 1.23041 0.93410 1.00871 0.84820 1.23914 0.95700 0.99617 1.01711 0.93450 0.78115 0.91969 0.91313 0.90439 0.88863 0.91689 0.91448 0.76419 0.78243 0.83013 0.83472 0.81749 0.81855 0.78897 0.91394 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -16.96 5.31 -52.55 -0.28 -17.24 16 10 C 0.17 3.15 4.57 -67.02 -0.31 2.85 16 11 C -0.15 -2.28 7.39 -25.91 -0.19 -2.47 16 12 C -0.12 -1.70 3.62 -89.81 -0.33 -2.02 16 13 C 0.13 1.69 5.50 -4.04 -0.02 1.67 16 14 N -0.72 -8.33 5.55 -61.39 -0.34 -8.67 16 15 C 0.59 7.55 7.81 -12.52 -0.10 7.45 16 16 O -0.55 -8.78 16.90 5.27 0.09 -8.69 16 17 C -0.27 -2.90 6.13 -105.05 -0.64 -3.54 16 18 C 0.10 0.92 11.50 -16.95 -0.20 0.72 16 19 N -0.29 -3.04 11.85 30.87 0.37 -2.67 16 20 N -0.31 -3.00 3.77 -10.11 -0.04 -3.04 16 21 C 0.11 0.87 6.71 -83.45 -0.56 0.31 16 22 C -0.07 -0.50 9.77 -39.10 -0.38 -0.88 16 23 C -0.15 -0.71 10.10 -39.47 -0.40 -1.11 16 24 C 0.09 0.49 11.18 -17.53 -0.20 0.29 16 25 N -0.46 -3.57 10.35 -13.10 -0.14 -3.70 16 26 C 0.09 0.66 10.62 -17.34 -0.18 0.48 16 27 C 0.13 1.18 10.62 -16.43 -0.17 1.00 16 28 C -0.17 -2.68 7.44 -25.83 -0.19 -2.87 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.78 7.90 -40.82 -0.32 9.46 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.40 3.90 7.43 -40.82 -0.30 3.60 16 38 H 0.20 1.32 7.50 -52.48 -0.39 0.92 16 39 H 0.15 1.02 7.77 -52.48 -0.41 0.61 16 40 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.16 0.89 6.74 -52.49 -0.35 0.54 16 43 H 0.19 1.34 7.04 -52.48 -0.37 0.97 16 44 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -34.20 387.28 -8.81 -43.01 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.89 Total: 10.22 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.12 Total: -5.27 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.30 Total: -62.02 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.20 -8.81 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091066836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.435 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds