Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00324 * 2 1 4 4 H 1.48493 * 109.47164 * 239.99759 * 3 2 1 5 5 H 1.48501 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99645 * 3 2 1 7 7 C 1.38809 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00424 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61438 * 205.00002 * 10 9 7 12 12 C 1.53775 * 87.08013 * 219.93227 * 11 10 9 13 13 C 1.53004 * 113.61235 * 139.97849 * 12 11 10 14 14 N 1.46504 * 109.46928 * 176.52822 * 13 12 11 15 15 C 1.34777 * 119.99854 * 179.97438 * 14 13 12 16 16 O 1.21583 * 119.99947 * 0.02562 * 15 14 13 17 17 C 1.47675 * 120.00036 * 180.27906 * 15 14 13 18 18 C 1.39702 * 120.07596 * 359.45052 * 17 15 14 19 19 C 1.37735 * 119.91742 * 179.72166 * 18 17 15 20 20 C 1.39045 * 120.07665 * 0.57547 * 19 18 17 21 21 N 1.39872 * 119.92019 * 179.70002 * 20 19 18 22 22 C 1.34808 * 126.84456 * 359.68911 * 21 20 19 23 23 N 1.30817 * 108.01548 * 179.83770 * 22 21 20 24 24 C 1.33281 * 109.84979 * 0.43763 * 23 22 21 25 25 N 1.30720 * 109.01632 * 359.73300 * 24 23 22 26 26 C 1.39043 * 120.16154 * 359.68178 * 20 19 18 27 27 C 1.37737 * 120.07675 * 0.04028 * 26 20 19 28 28 C 1.53783 * 87.17311 * 25.39199 * 12 11 10 29 29 H 0.97000 * 119.99827 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99349 * 359.97438 * 9 7 2 31 31 H 1.09001 * 112.84964 * 336.19690 * 10 9 7 32 32 H 1.08997 * 113.61573 * 105.38278 * 11 10 9 33 33 H 1.09004 * 113.61337 * 334.48083 * 11 10 9 34 34 H 1.08996 * 113.61973 * 270.79511 * 12 11 10 35 35 H 1.08998 * 109.47202 * 56.53081 * 13 12 11 36 36 H 1.08997 * 109.47419 * 296.52979 * 13 12 11 37 37 H 0.97000 * 120.00410 * 0.02562 * 14 13 12 38 38 H 1.07993 * 120.04162 * 0.02562 * 18 17 15 39 39 H 1.07995 * 119.96129 * 180.30214 * 19 18 17 40 40 H 1.08002 * 125.98715 * 359.97438 * 22 21 20 41 41 H 1.08005 * 125.49602 * 179.68585 * 24 23 22 42 42 H 1.08001 * 119.96601 * 180.02562 * 26 20 19 43 43 H 1.07999 * 120.03804 * 179.97438 * 27 26 20 44 44 H 1.09004 * 113.61586 * 89.15999 * 28 12 11 45 45 H 1.09001 * 113.61101 * 220.05673 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.2604 -4.8291 -0.5939 12 6 1.8492 -5.6979 0.5300 13 6 0.8468 -6.6862 1.1296 14 7 1.5206 -7.5199 2.1282 15 6 0.8296 -8.4678 2.7918 16 8 -0.3529 -8.6314 2.5613 17 6 1.5074 -9.3040 3.8028 18 6 2.8675 -9.1216 4.0645 19 6 3.4951 -9.8994 5.0122 20 6 2.7793 -10.8734 5.6996 21 7 3.4214 -11.6657 6.6569 22 6 4.7196 -11.6073 7.0156 23 7 4.9243 -12.5083 7.9416 24 6 3.7917 -13.1644 8.1930 25 7 2.8437 -12.6848 7.4315 26 6 1.4268 -11.0614 5.4379 27 6 0.7913 -10.2833 4.4956 28 6 2.0018 -4.4038 1.3467 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0658 -3.5642 -0.4030 32 1 1.5917 -5.1210 -1.5904 33 1 0.1801 -4.7011 -0.5265 34 1 2.7991 -6.1644 0.2694 35 1 0.4442 -7.3198 0.3393 36 1 0.0339 -6.1365 1.6040 37 1 2.4640 -7.3891 2.3124 38 1 3.4250 -8.3683 3.5279 39 1 4.5454 -9.7557 5.2186 40 1 5.4601 -10.9332 6.6111 41 1 3.6760 -13.9640 8.9098 42 1 0.8737 -11.8185 5.9739 43 1 -0.2592 -10.4302 4.2925 44 1 1.1245 -4.1594 1.9457 45 1 2.9308 -4.3530 1.9146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091079005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 121.372807 kcal Electronic energy + Delta-G solvation = -27151.421083 eV Core-core repulsion = 23172.064609 eV Total energy + Delta-G solvation = -3979.356473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.89897 -40.58321 -39.14017 -38.33215 -34.91015 -34.69752 -33.36063 -32.25731 -31.49687 -30.61259 -30.03335 -27.46199 -25.17706 -25.06461 -24.03052 -23.81365 -22.48932 -21.73852 -21.11897 -20.75237 -19.24245 -19.06188 -17.97335 -17.06851 -16.58644 -16.43068 -16.15177 -15.62597 -15.41410 -15.04094 -14.84315 -14.78757 -14.69501 -14.26477 -14.02475 -13.70096 -13.61036 -13.20479 -13.13665 -12.91979 -12.81585 -11.97665 -11.88326 -11.67417 -11.46984 -11.35640 -11.26660 -10.85739 -10.71791 -10.58954 -10.48203 -10.37575 -10.21256 -10.01699 -9.87854 -9.72833 -9.54372 -9.22144 -8.93340 -8.89385 -6.99920 -5.81214 -3.10405 -0.15122 0.67518 1.22045 1.56132 2.31169 2.53590 2.93408 3.35571 3.40780 3.45342 3.46587 3.64933 3.75806 4.09431 4.23410 4.29987 4.40370 4.55353 4.62576 4.82818 4.87497 4.92383 4.94219 5.16581 5.29582 5.41050 5.42578 5.43928 5.45742 5.67701 5.74463 5.75595 5.77285 5.83157 5.88558 5.99524 6.04923 6.16637 6.25394 6.29993 6.35276 6.37363 6.53544 6.77011 7.06193 7.29612 7.38665 7.65336 7.98756 8.37255 9.48242 10.06309 10.40291 11.40976 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001629 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.337410 B =17184.130662 C =18051.754101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.717 5.717 15 C 0.554 3.446 16 O -0.535 6.535 17 C -0.132 4.132 18 C -0.059 4.059 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.332 5.332 22 C 0.265 3.735 23 N -0.536 5.536 24 C 0.209 3.791 25 N -0.312 5.312 26 C -0.119 4.119 27 C -0.036 4.036 28 C -0.162 4.162 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.225 0.775 41 H 0.225 0.775 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 -26.511 11.673 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.369 5.369 15 C 0.340 3.660 16 O -0.413 6.413 17 C -0.136 4.136 18 C -0.078 4.078 19 C -0.161 4.161 20 C 0.076 3.924 21 N -0.117 5.117 22 C -0.031 4.031 23 N -0.262 5.262 24 C -0.094 4.094 25 N -0.137 5.137 26 C -0.139 4.139 27 C -0.056 4.056 28 C -0.203 4.203 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.241 0.759 41 H 0.241 0.759 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.927 -26.745 11.659 30.233 hybrid contribution 0.779 1.104 0.113 1.355 sum 8.705 -25.641 11.773 29.527 Atomic orbital electron populations 1.69651 1.05143 1.25904 1.57239 1.24771 0.95520 0.97798 1.02731 0.86264 0.78542 0.83500 0.77839 1.21217 1.21663 1.21259 1.19256 0.91037 0.84262 1.43239 0.91145 1.42404 1.05768 0.99864 1.86972 1.21543 0.95320 0.85065 0.92705 1.23445 1.01095 0.96957 0.96681 1.22648 0.98359 0.94385 0.99321 1.21507 0.95522 0.91986 0.90158 1.45971 1.13804 1.35889 1.41198 1.18121 0.86567 0.80259 0.81026 1.90810 1.15182 1.69295 1.65999 1.20159 0.94286 0.99335 0.99797 1.21161 0.93375 0.97647 0.95631 1.20718 1.00652 0.96413 0.98283 1.17753 0.92819 0.91967 0.89894 1.47746 1.08214 1.26490 1.29206 1.26309 0.86093 0.97511 0.93137 1.70657 1.28268 1.10089 1.17140 1.26244 0.85586 0.99422 0.98108 1.78167 1.22330 1.03542 1.09661 1.20927 0.92216 1.01396 0.99362 1.21242 1.00970 0.91467 0.91894 1.23990 1.01353 0.94941 1.00010 0.93370 0.78049 0.90682 0.91939 0.90054 0.89354 0.91463 0.90908 0.76555 0.84080 0.84258 0.75860 0.75910 0.83696 0.83346 0.90320 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -17.33 5.41 -52.55 -0.28 -17.61 16 10 C 0.17 3.06 4.48 -67.03 -0.30 2.76 16 11 C -0.14 -2.13 7.40 -25.92 -0.19 -2.32 16 12 C -0.13 -1.55 3.75 -89.81 -0.34 -1.89 16 13 C 0.13 1.57 5.50 -4.04 -0.02 1.55 16 14 N -0.72 -7.16 5.51 -61.30 -0.34 -7.50 16 15 C 0.55 6.41 7.77 -12.41 -0.10 6.31 16 16 O -0.53 -8.28 16.34 5.29 0.09 -8.20 16 17 C -0.13 -1.16 5.88 -104.95 -0.62 -1.78 16 18 C -0.06 -0.35 9.53 -39.22 -0.37 -0.72 16 19 C -0.14 -0.73 9.45 -39.47 -0.37 -1.11 16 20 C 0.17 1.24 6.70 -83.59 -0.56 0.68 16 21 N -0.33 -2.61 3.81 -11.77 -0.04 -2.65 16 22 C 0.26 1.65 11.97 -90.32 -1.08 0.56 16 23 N -0.54 -4.30 11.19 -15.73 -0.18 -4.48 16 24 C 0.21 1.52 13.03 -91.77 -1.20 0.32 16 25 N -0.31 -2.79 12.03 29.30 0.35 -2.44 16 26 C -0.12 -0.95 9.66 -39.47 -0.38 -1.33 16 27 C -0.04 -0.31 9.58 -39.22 -0.38 -0.69 16 28 C -0.16 -2.49 7.45 -25.83 -0.19 -2.68 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 10.03 7.92 -40.82 -0.32 9.71 16 31 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.01 7.87 -51.93 -0.41 0.61 16 37 H 0.40 2.84 6.50 -40.82 -0.27 2.57 16 38 H 0.14 0.49 6.39 -52.49 -0.34 0.16 16 39 H 0.14 0.28 6.78 -52.49 -0.36 -0.07 16 40 H 0.23 0.38 7.08 -52.49 -0.37 0.01 16 41 H 0.22 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.15 1.12 7.72 -52.49 -0.41 0.72 16 43 H 0.15 1.29 7.64 -52.49 -0.40 0.89 16 44 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -35.39 384.60 -11.03 -46.42 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.78 Total: 8.37 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -6.34 Total: -7.60 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.23 Total: -61.75 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.39 -11.03 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091079005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.793 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds