Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00324 * 2 1 4 4 H 1.48493 * 109.47164 * 239.99759 * 3 2 1 5 5 H 1.48501 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99645 * 3 2 1 7 7 C 1.38809 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00424 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61438 * 205.00002 * 10 9 7 12 12 C 1.53775 * 87.08013 * 219.93227 * 11 10 9 13 13 C 1.53004 * 113.61235 * 139.97849 * 12 11 10 14 14 N 1.46504 * 109.46928 * 176.52822 * 13 12 11 15 15 C 1.34777 * 119.99854 * 179.97438 * 14 13 12 16 16 O 1.21583 * 119.99947 * 0.02562 * 15 14 13 17 17 C 1.47675 * 120.00036 * 180.27906 * 15 14 13 18 18 C 1.39702 * 120.07596 * 359.45052 * 17 15 14 19 19 C 1.37735 * 119.91742 * 179.72166 * 18 17 15 20 20 C 1.39045 * 120.07665 * 0.57547 * 19 18 17 21 21 N 1.39872 * 119.92019 * 179.70002 * 20 19 18 22 22 C 1.34808 * 126.84456 * 359.68911 * 21 20 19 23 23 N 1.30817 * 108.01548 * 179.83770 * 22 21 20 24 24 C 1.33281 * 109.84979 * 0.43763 * 23 22 21 25 25 N 1.30720 * 109.01632 * 359.73300 * 24 23 22 26 26 C 1.39043 * 120.16154 * 359.68178 * 20 19 18 27 27 C 1.37737 * 120.07675 * 0.04028 * 26 20 19 28 28 C 1.53783 * 87.17311 * 25.39199 * 12 11 10 29 29 H 0.97000 * 119.99827 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99349 * 359.97438 * 9 7 2 31 31 H 1.09001 * 112.84964 * 336.19690 * 10 9 7 32 32 H 1.08997 * 113.61573 * 105.38278 * 11 10 9 33 33 H 1.09004 * 113.61337 * 334.48083 * 11 10 9 34 34 H 1.08996 * 113.61973 * 270.79511 * 12 11 10 35 35 H 1.08998 * 109.47202 * 56.53081 * 13 12 11 36 36 H 1.08997 * 109.47419 * 296.52979 * 13 12 11 37 37 H 0.97000 * 120.00410 * 0.02562 * 14 13 12 38 38 H 1.07993 * 120.04162 * 0.02562 * 18 17 15 39 39 H 1.07995 * 119.96129 * 180.30214 * 19 18 17 40 40 H 1.08002 * 125.98715 * 359.97438 * 22 21 20 41 41 H 1.08005 * 125.49602 * 179.68585 * 24 23 22 42 42 H 1.08001 * 119.96601 * 180.02562 * 26 20 19 43 43 H 1.07999 * 120.03804 * 179.97438 * 27 26 20 44 44 H 1.09004 * 113.61586 * 89.15999 * 28 12 11 45 45 H 1.09001 * 113.61101 * 220.05673 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.2604 -4.8291 -0.5939 12 6 1.8492 -5.6979 0.5300 13 6 0.8468 -6.6862 1.1296 14 7 1.5206 -7.5199 2.1282 15 6 0.8296 -8.4678 2.7918 16 8 -0.3529 -8.6314 2.5613 17 6 1.5074 -9.3040 3.8028 18 6 2.8675 -9.1216 4.0645 19 6 3.4951 -9.8994 5.0122 20 6 2.7793 -10.8734 5.6996 21 7 3.4214 -11.6657 6.6569 22 6 4.7196 -11.6073 7.0156 23 7 4.9243 -12.5083 7.9416 24 6 3.7917 -13.1644 8.1930 25 7 2.8437 -12.6848 7.4315 26 6 1.4268 -11.0614 5.4379 27 6 0.7913 -10.2833 4.4956 28 6 2.0018 -4.4038 1.3467 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0658 -3.5642 -0.4030 32 1 1.5917 -5.1210 -1.5904 33 1 0.1801 -4.7011 -0.5265 34 1 2.7991 -6.1644 0.2694 35 1 0.4442 -7.3198 0.3393 36 1 0.0339 -6.1365 1.6040 37 1 2.4640 -7.3891 2.3124 38 1 3.4250 -8.3683 3.5279 39 1 4.5454 -9.7557 5.2186 40 1 5.4601 -10.9332 6.6111 41 1 3.6760 -13.9640 8.9098 42 1 0.8737 -11.8185 5.9739 43 1 -0.2592 -10.4302 4.2925 44 1 1.1245 -4.1594 1.9457 45 1 2.9308 -4.3530 1.9146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091079005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 99.637281 kcal Electronic energy + Delta-G solvation = -27152.363606 eV Core-core repulsion = 23172.064609 eV Total energy + Delta-G solvation = -3980.298997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.39625 -41.35830 -40.09997 -39.34915 -36.10838 -35.35630 -34.97980 -32.78616 -32.32531 -31.89751 -30.94407 -28.58555 -26.42408 -26.07511 -25.37000 -24.49128 -23.17610 -22.50102 -22.10856 -21.55961 -20.49058 -19.64404 -19.08663 -18.67692 -17.39688 -16.95563 -16.78750 -16.67520 -16.49935 -16.12424 -15.87770 -15.67115 -15.36605 -15.20170 -15.06393 -14.84396 -14.53573 -14.40547 -13.94311 -13.80407 -13.41803 -13.31109 -13.20176 -13.00772 -12.88617 -12.60853 -12.23796 -12.18342 -12.05826 -11.94240 -11.60062 -11.52682 -11.25422 -11.14175 -11.02511 -10.94783 -10.77229 -10.23624 -10.15734 -9.51903 -8.95167 -7.92618 -5.20786 -0.71411 0.17522 0.68153 1.09104 1.48760 1.51542 1.57651 1.74981 1.87913 2.09128 2.58556 2.71246 3.26497 3.33873 3.39302 3.59585 3.65540 3.76766 3.78286 3.84790 3.91914 3.97019 4.12092 4.29251 4.32111 4.38691 4.42451 4.46218 4.58838 4.77857 4.82951 4.91410 4.94366 5.01239 5.02875 5.08575 5.14095 5.24818 5.25738 5.30767 5.35387 5.43986 5.49230 5.55124 5.77022 5.89404 6.29569 6.51301 6.89653 7.16563 7.35083 8.14464 8.35356 9.30679 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001629 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.337410 B =17184.130662 C =18051.754101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.141 3.859 11 C -0.139 4.139 12 C -0.093 4.093 13 C 0.137 3.863 14 N -0.703 5.703 15 C 0.552 3.448 16 O -0.585 6.585 17 C -0.149 4.149 18 C -0.045 4.045 19 C -0.126 4.126 20 C 0.164 3.836 21 N -0.343 5.343 22 C 0.273 3.727 23 N -0.563 5.563 24 C 0.208 3.792 25 N -0.350 5.350 26 C -0.130 4.130 27 C -0.047 4.047 28 C -0.153 4.153 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.417 0.583 38 H 0.174 0.826 39 H 0.183 0.817 40 H 0.269 0.731 41 H 0.250 0.750 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.053 0.947 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.138 -27.313 12.000 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.178 4.178 12 C -0.112 4.112 13 C 0.013 3.987 14 N -0.355 5.355 15 C 0.341 3.659 16 O -0.466 6.466 17 C -0.152 4.152 18 C -0.064 4.064 19 C -0.146 4.146 20 C 0.071 3.929 21 N -0.127 5.127 22 C -0.021 4.021 23 N -0.289 5.289 24 C -0.093 4.093 25 N -0.175 5.175 26 C -0.150 4.150 27 C -0.066 4.066 28 C -0.194 4.194 29 H 0.058 0.942 30 H 0.203 0.797 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.256 0.744 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.285 0.715 41 H 0.266 0.734 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.072 0.928 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.040 -27.597 11.995 32.410 hybrid contribution -0.399 1.233 0.053 1.297 sum 11.640 -26.364 12.048 31.237 Atomic orbital electron populations 1.69823 1.06741 1.26007 1.59760 1.25592 0.96330 1.01247 1.04002 0.85216 0.77146 0.79191 0.78248 1.20235 1.22618 1.20333 1.19720 0.91662 0.85388 1.40704 0.90146 1.42644 1.05338 1.01300 1.87524 1.22020 0.95661 0.83763 0.95356 1.23335 0.99871 0.96029 0.98583 1.22476 0.99506 0.92863 0.96388 1.21278 0.95036 0.91957 0.90450 1.45765 1.14520 1.34935 1.40313 1.18557 0.86057 0.80250 0.81077 1.90786 1.17461 1.70772 1.67622 1.20000 0.95727 0.99586 0.99935 1.21482 0.91904 0.97773 0.95278 1.21145 1.02369 0.94512 0.96622 1.18002 0.92634 0.92337 0.89919 1.47811 1.08856 1.26598 1.29464 1.27221 0.85981 0.97005 0.91916 1.70693 1.28698 1.11154 1.18343 1.26843 0.85152 0.99502 0.97851 1.78134 1.23699 1.04798 1.10853 1.20842 0.93085 1.01516 0.99563 1.21143 1.00616 0.92225 0.92635 1.23750 1.01196 0.95982 0.98452 0.94199 0.79749 0.89958 0.90291 0.91719 0.85514 0.91425 0.93489 0.74439 0.80850 0.79984 0.71541 0.73411 0.84534 0.84788 0.92833 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.14 9.97 84.03 0.84 -12.31 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -35.83 5.41 -320.17 -1.73 -37.56 16 10 C 0.14 5.02 4.48 45.58 0.20 5.23 16 11 C -0.14 -3.95 7.40 31.12 0.23 -3.72 16 12 C -0.09 -1.98 3.75 -10.27 -0.04 -2.02 16 13 C 0.14 3.07 5.50 86.38 0.47 3.54 16 14 N -0.70 -12.40 5.51 -466.12 -2.57 -14.96 16 15 C 0.55 12.40 7.77 86.74 0.67 13.08 16 16 O -0.58 -18.75 16.34 -3.98 -0.06 -18.82 16 17 C -0.15 -2.42 5.88 -20.08 -0.12 -2.54 16 18 C -0.05 -0.37 9.53 22.50 0.21 -0.15 16 19 C -0.13 -0.79 9.45 22.34 0.21 -0.58 16 20 C 0.16 2.09 6.70 38.24 0.26 2.34 16 21 N -0.34 -4.71 3.81 -191.16 -0.73 -5.44 16 22 C 0.27 2.53 11.97 180.24 2.16 4.69 16 23 N -0.56 -7.86 11.19 -203.69 -2.28 -10.14 16 24 C 0.21 2.80 13.03 180.75 2.35 5.15 16 25 N -0.35 -6.03 12.03 -61.21 -0.74 -6.76 16 26 C -0.13 -2.08 9.66 22.34 0.22 -1.86 16 27 C -0.05 -0.83 9.58 22.51 0.22 -0.61 16 28 C -0.15 -4.41 7.45 31.18 0.23 -4.18 16 29 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.37 19.95 7.92 -92.70 -0.73 19.22 16 31 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.08 8.08 -2.38 -0.02 2.06 16 34 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.32 7.87 -2.39 -0.02 1.31 16 37 H 0.42 4.14 6.50 -92.71 -0.60 3.54 16 38 H 0.17 0.22 6.39 -2.91 -0.02 0.20 16 39 H 0.18 -0.46 6.78 -2.91 -0.02 -0.48 16 40 H 0.27 -0.51 7.08 -2.91 -0.02 -0.53 16 41 H 0.25 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 2.31 7.72 -2.91 -0.02 2.29 16 43 H 0.13 2.64 7.64 -2.91 -0.02 2.62 16 44 H 0.05 1.84 7.92 -2.38 -0.02 1.82 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -81.32 384.60 2.50 -78.82 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.29 Total: 24.74 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 8.59 Total: 1.99 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -7.76 Total: -134.17 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.32 2.50 -78.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091079005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.453 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds