Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48500 * 109.46948 * 270.00311 * 3 2 1 5 5 H 1.48496 * 109.46966 * 30.00046 * 3 2 1 6 6 H 1.48496 * 109.47072 * 150.00268 * 3 2 1 7 7 C 1.38809 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99279 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00281 * 180.02562 * 9 7 2 11 11 C 1.53782 * 113.61671 * 155.00162 * 10 9 7 12 12 C 1.53779 * 87.08033 * 89.11339 * 11 10 9 13 13 C 1.53004 * 113.60972 * 139.98435 * 12 11 10 14 14 N 1.46507 * 109.46810 * 176.53109 * 13 12 11 15 15 C 1.34777 * 119.99527 * 180.02562 * 14 13 12 16 16 O 1.21561 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.47832 * 119.99466 * 179.97438 * 15 14 13 18 18 N 1.34571 * 126.02602 * 0.02562 * 17 15 14 19 19 C 1.30874 * 107.28754 * 179.97438 * 18 17 15 20 20 N 1.34882 * 107.59348 * 0.02562 * 19 18 17 21 21 C 1.40147 * 125.77284 * 179.97438 * 20 19 18 22 22 C 1.38847 * 120.06333 * 359.72085 * 21 20 19 23 23 C 1.38116 * 119.92746 * 179.70221 * 22 21 20 24 24 C 1.38275 * 120.06849 * 0.59642 * 23 22 21 25 25 C 1.38283 * 120.13554 * 359.68043 * 24 23 22 26 26 C 1.38107 * 120.06901 * 0.02562 * 25 24 23 27 27 N 1.28856 * 108.46020 * 359.97438 * 20 19 18 28 28 C 1.53775 * 87.17345 * 25.39287 * 12 11 10 29 29 H 0.96993 * 120.00627 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00245 * 0.02562 * 9 7 2 31 31 H 1.08999 * 112.84668 * 23.80320 * 10 9 7 32 32 H 1.09001 * 113.60876 * 334.56436 * 11 10 9 33 33 H 1.08997 * 113.61428 * 203.66602 * 11 10 9 34 34 H 1.08999 * 113.61514 * 270.79962 * 12 11 10 35 35 H 1.08998 * 109.47398 * 56.53233 * 13 12 11 36 36 H 1.09000 * 109.47028 * 296.52408 * 13 12 11 37 37 H 0.96999 * 119.99965 * 359.97438 * 14 13 12 38 38 H 1.07999 * 126.20118 * 179.97438 * 19 18 17 39 39 H 1.08003 * 120.03757 * 0.02562 * 22 21 20 40 40 H 1.08006 * 119.96703 * 180.31974 * 23 22 21 41 41 H 1.08003 * 119.93610 * 179.69765 * 24 23 22 42 42 H 1.08002 * 119.96651 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.04093 * 180.02562 * 26 25 24 44 44 H 1.08995 * 113.61756 * 89.15956 * 28 12 11 45 45 H 1.08997 * 113.61279 * 220.05909 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.2604 -4.8288 0.5949 12 6 0.7207 -5.0790 -0.8232 13 6 0.6199 -6.5616 -1.1877 14 7 0.0214 -6.6977 -2.5180 15 6 -0.1674 -7.9217 -3.0499 16 8 0.1594 -8.9125 -2.4261 17 6 -0.7718 -8.0590 -4.3919 18 7 -1.1759 -7.0498 -5.1851 19 6 -1.6511 -7.5832 -6.2816 20 7 -1.5406 -8.9224 -6.1647 21 6 -1.9366 -9.8640 -7.1241 22 6 -2.5044 -9.4429 -8.3191 23 6 -2.8880 -10.3730 -9.2653 24 6 -2.7184 -11.7229 -9.0184 25 6 -2.1584 -12.1457 -7.8268 26 6 -1.7673 -11.2202 -6.8792 27 7 -1.0094 -9.1896 -5.0215 28 6 1.9980 -4.4014 -1.3466 29 1 -0.4851 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 3.0658 -3.5637 0.4049 32 1 0.4941 -4.5189 1.3054 33 1 1.8873 -5.6366 0.9724 34 1 -0.1908 -4.5251 -1.0475 35 1 -0.0030 -7.0745 -0.4548 36 1 1.6163 -7.0036 -1.1907 37 1 -0.2397 -5.9071 -3.0155 38 1 -2.0586 -7.0481 -7.1266 39 1 -2.6412 -8.3888 -8.5108 40 1 -3.3250 -10.0458 -10.1973 41 1 -3.0236 -12.4486 -9.7577 42 1 -2.0268 -13.2007 -7.6369 43 1 -1.3296 -11.5509 -5.9489 44 1 2.8269 -5.0922 -1.5010 45 1 1.8263 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091087427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 125.506365 kcal Electronic energy + Delta-G solvation = -27339.622899 eV Core-core repulsion = 23360.445670 eV Total energy + Delta-G solvation = -3979.177229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.02781 -39.95421 -39.51033 -38.38418 -35.07736 -34.64605 -33.17288 -32.57268 -31.51326 -30.44105 -29.92782 -27.67368 -25.09446 -24.96064 -24.50996 -23.61751 -22.61902 -21.92892 -21.51844 -20.55612 -19.26239 -18.38783 -17.62726 -17.13251 -17.09300 -16.83406 -16.22445 -15.52303 -15.43948 -15.23040 -14.85180 -14.74069 -14.28458 -14.11182 -14.09153 -13.63425 -13.55588 -13.17085 -12.85787 -12.71754 -12.33749 -12.24930 -11.88249 -11.72574 -11.47026 -11.34688 -11.02527 -10.84758 -10.82515 -10.50081 -10.38772 -10.33912 -10.14978 -9.85175 -9.72402 -9.66390 -9.46355 -9.11816 -8.95476 -8.85622 -6.97342 -5.78319 -3.07195 0.09072 0.62906 1.37683 1.66582 1.81494 2.91239 3.07704 3.22504 3.43617 3.48920 3.50526 3.71526 3.90840 4.13050 4.28981 4.43045 4.47441 4.57896 4.65399 4.80586 4.93612 5.09324 5.10151 5.26265 5.28924 5.47946 5.50245 5.53697 5.65846 5.66323 5.72892 5.79287 5.88323 5.92692 5.97323 6.01985 6.13309 6.25118 6.32429 6.38553 6.41530 6.62161 6.79630 6.92905 7.08440 7.35156 7.68352 7.71304 8.09823 8.40834 9.51507 10.09448 10.43695 11.44110 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.001723 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.458150 B =16251.243471 C =17345.434467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.132 3.868 14 N -0.699 5.699 15 C 0.612 3.388 16 O -0.522 6.522 17 C 0.156 3.844 18 N -0.472 5.472 19 C 0.199 3.801 20 N -0.253 5.253 21 C 0.129 3.871 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.102 4.102 27 N -0.253 5.253 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.230 0.770 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -24.155 -20.026 32.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.009 3.991 14 N -0.351 5.351 15 C 0.393 3.607 16 O -0.396 6.396 17 C -0.124 4.124 18 N -0.196 5.196 19 C -0.095 4.095 20 N -0.042 5.042 21 C 0.038 3.962 22 C -0.142 4.142 23 C -0.116 4.116 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.122 4.122 27 N -0.089 5.089 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.580 -24.892 -19.067 32.038 hybrid contribution -0.257 1.376 -0.735 1.581 sum -6.837 -23.516 -19.802 31.494 Atomic orbital electron populations 1.69659 1.05118 1.25746 1.57514 1.24757 0.95530 0.97756 1.02837 0.86172 0.78663 0.83739 0.77504 1.21721 1.21787 1.20713 1.19294 0.91128 0.83997 1.42874 0.90996 1.42169 1.05696 0.99427 1.87107 1.21095 0.95096 0.85588 0.92743 1.23442 1.00495 0.99703 0.95015 1.22723 0.99814 0.92659 0.98651 1.21607 0.98167 0.97513 0.81806 1.45779 1.62055 1.07477 1.19785 1.16231 0.78582 0.84261 0.81668 1.90829 1.50664 1.37550 1.60511 1.23964 1.04957 0.84977 0.98480 1.71399 1.15379 1.30641 1.02161 1.26623 1.01337 0.81638 0.99931 1.44600 1.41079 1.06854 1.11692 1.17676 1.02069 0.88205 0.88270 1.20891 1.00176 1.01220 0.91890 1.21045 0.98943 0.92659 0.98906 1.21388 0.98378 0.96149 0.97368 1.21168 0.97461 0.99991 0.93119 1.21112 0.99675 0.90275 1.01125 1.74373 1.14287 1.25819 0.94429 1.23921 0.95616 0.99657 1.01790 0.93467 0.78089 0.91924 0.91249 0.90394 0.88683 0.91340 0.91110 0.75080 0.75389 0.84537 0.84412 0.84952 0.84553 0.83877 0.91377 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.67 9.97 -15.07 -0.15 -6.82 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.45 5.31 -52.55 -0.28 -17.73 16 10 C 0.17 3.28 4.57 -67.03 -0.31 2.97 16 11 C -0.15 -2.36 7.39 -25.92 -0.19 -2.56 16 12 C -0.12 -1.83 3.62 -89.81 -0.33 -2.16 16 13 C 0.13 1.85 5.50 -4.04 -0.02 1.82 16 14 N -0.70 -9.88 5.55 -61.25 -0.34 -10.22 16 15 C 0.61 9.64 7.83 -12.33 -0.10 9.55 16 16 O -0.52 -9.62 17.09 5.31 0.09 -9.53 16 17 C 0.16 2.27 7.96 -156.29 -1.24 1.02 16 18 N -0.47 -5.95 11.09 -12.29 -0.14 -6.08 16 19 C 0.20 1.83 11.93 -90.21 -1.08 0.75 16 20 N -0.25 -2.65 3.52 -11.77 -0.04 -2.69 16 21 C 0.13 1.02 6.67 -83.60 -0.56 0.47 16 22 C -0.12 -0.60 9.45 -39.40 -0.37 -0.97 16 23 C -0.10 -0.35 10.04 -39.61 -0.40 -0.75 16 24 C -0.11 -0.43 10.04 -39.55 -0.40 -0.83 16 25 C -0.10 -0.50 10.04 -39.61 -0.40 -0.89 16 26 C -0.10 -0.78 9.61 -39.40 -0.38 -1.15 16 27 N -0.25 -3.51 11.32 32.08 0.36 -3.14 16 28 C -0.17 -2.86 7.44 -25.83 -0.19 -3.05 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 10.07 7.90 -40.82 -0.32 9.75 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 37 H 0.41 5.55 8.18 -40.82 -0.33 5.21 16 38 H 0.23 0.89 7.01 -52.49 -0.37 0.52 16 39 H 0.14 0.32 6.71 -52.48 -0.35 -0.03 16 40 H 0.14 0.16 8.06 -52.48 -0.42 -0.26 16 41 H 0.13 0.19 8.06 -52.48 -0.42 -0.23 16 42 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 43 H 0.14 1.23 7.68 -52.49 -0.40 0.83 16 44 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -35.08 387.72 -10.95 -46.03 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.95 Total: 10.52 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -6.20 Total: -3.06 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.29 Total: -67.07 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.08 -10.95 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091087427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.535 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds