Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47136 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47266 * 299.99975 * 3 2 1 6 6 H 1.48504 * 109.46726 * 60.00023 * 3 2 1 7 7 C 1.38807 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00034 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99756 * 179.97438 * 9 7 2 11 11 C 1.53776 * 113.61124 * 155.00351 * 10 9 7 12 12 C 1.53780 * 87.08758 * 89.11355 * 11 10 9 13 13 C 1.53001 * 113.61736 * 139.97573 * 12 11 10 14 14 N 1.46501 * 109.46858 * 176.53265 * 13 12 11 15 15 C 1.34776 * 119.99767 * 180.02562 * 14 13 12 16 16 O 1.21550 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.47933 * 120.00162 * 179.97438 * 15 14 13 18 18 C 1.39505 * 119.59814 * 179.97438 * 17 15 14 19 19 C 1.38222 * 119.18970 * 180.02562 * 18 17 15 20 20 C 1.39795 * 118.38877 * 0.02562 * 19 18 17 21 21 C 1.48259 * 120.43605 * 180.02562 * 20 19 18 22 22 C 1.40951 * 126.25338 * 359.69028 * 21 20 19 23 23 N 1.30626 * 108.07313 * 179.81726 * 22 21 20 24 24 N 1.40004 * 108.56749 * 0.44422 * 23 22 21 25 25 H 0.96996 * 125.86432 * 179.73950 * 24 23 22 26 26 C 1.34714 * 108.25792 * 359.71275 * 24 23 22 27 27 C 1.39736 * 119.12079 * 0.02562 * 20 19 18 28 28 N 1.31308 * 120.73609 * 0.02562 * 27 20 19 29 29 C 1.53783 * 87.17047 * 25.38837 * 12 11 10 30 30 H 0.96998 * 119.99518 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99709 * 0.02562 * 9 7 2 32 32 H 1.08997 * 112.85100 * 23.80098 * 10 9 7 33 33 H 1.09007 * 113.61819 * 334.55964 * 11 10 9 34 34 H 1.09008 * 113.61513 * 203.66396 * 11 10 9 35 35 H 1.08998 * 113.61495 * 270.80406 * 12 11 10 36 36 H 1.09004 * 109.46367 * 56.53419 * 13 12 11 37 37 H 1.08993 * 109.46922 * 296.53357 * 13 12 11 38 38 H 0.96994 * 120.00366 * 359.97438 * 14 13 12 39 39 H 1.07997 * 120.40115 * 0.02562 * 18 17 15 40 40 H 1.07996 * 120.80416 * 180.27502 * 19 18 17 41 41 H 1.08000 * 125.95850 * 359.96169 * 22 21 20 42 42 H 1.07995 * 126.19666 * 180.02562 * 26 24 23 43 43 H 1.08009 * 119.63635 * 179.97438 * 27 20 19 44 44 H 1.09001 * 113.61494 * 89.15976 * 29 12 11 45 45 H 1.08998 * 113.61890 * 220.06219 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.2600 -4.8287 0.5959 12 6 0.7202 -5.0791 -0.8221 13 6 0.6194 -6.5616 -1.1867 14 7 0.0208 -6.6977 -2.5169 15 6 -0.1679 -7.9215 -3.0489 16 8 0.1580 -8.9123 -2.4248 17 6 -0.7729 -8.0590 -4.3919 18 6 -0.9639 -9.3298 -4.9347 19 6 -1.5294 -9.4485 -6.1904 20 6 -1.8889 -8.2812 -6.8704 21 6 -2.4993 -8.3557 -8.2195 22 6 -2.7728 -9.5317 -8.9468 23 7 -3.3123 -9.1875 -10.0856 24 7 -3.3951 -7.7908 -10.1357 25 1 -3.7523 -7.2688 -10.8710 26 6 -2.8938 -7.2969 -8.9870 27 6 -1.6653 -7.0434 -6.2618 28 7 -1.1246 -6.9707 -5.0674 29 6 1.9976 -4.4015 -1.3456 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 3.0655 -3.5639 0.4059 33 1 0.4936 -4.5189 1.3065 34 1 1.8868 -5.6367 0.9735 35 1 -0.1912 -4.5250 -1.0465 36 1 -0.0035 -7.0744 -0.4537 37 1 1.6157 -7.0036 -1.1896 38 1 -0.2403 -5.9071 -3.0145 39 1 -0.6736 -10.2101 -4.3805 40 1 -1.6932 -10.4196 -6.6336 41 1 -2.5734 -10.5411 -8.6187 42 1 -2.8181 -6.2529 -8.7210 43 1 -1.9395 -6.1362 -6.7799 44 1 2.8265 -5.0924 -1.4999 45 1 1.8260 -3.7472 -2.2003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091105747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = 103.980975 kcal Electronic energy + Delta-G solvation = -27267.238400 eV Core-core repulsion = 23287.127760 eV Total energy + Delta-G solvation = -3980.110640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84077 -40.61495 -39.20641 -38.29280 -34.69749 -33.84216 -33.11836 -32.32422 -31.93293 -30.24830 -29.41325 -27.34214 -25.02660 -24.69770 -24.33050 -23.58165 -22.09843 -21.76709 -21.13013 -20.56370 -18.78357 -18.62536 -17.91116 -17.21038 -16.75574 -15.68715 -15.60547 -15.46919 -15.39411 -15.23852 -14.91742 -14.76836 -14.28076 -14.10671 -13.83752 -13.75657 -13.56211 -13.20733 -13.08686 -12.86130 -12.42041 -12.22486 -11.88205 -11.44550 -11.36814 -11.02376 -10.85455 -10.77638 -10.47974 -10.40644 -10.30096 -10.12545 -9.94076 -9.92482 -9.70098 -9.67664 -9.42496 -8.96429 -8.86743 -8.43348 -6.98166 -5.79671 -3.08426 0.16590 0.94330 1.35010 2.13271 2.26304 2.84531 3.13605 3.42013 3.47987 3.50097 3.73344 3.88754 4.05486 4.21748 4.44351 4.48664 4.56728 4.63291 4.76296 4.89455 4.98891 5.10636 5.12198 5.26535 5.32042 5.41759 5.47118 5.65891 5.68244 5.74603 5.80679 5.90162 5.92731 5.99236 6.14450 6.24917 6.25953 6.40858 6.46665 6.59724 6.62770 6.79162 6.93492 7.00270 7.08189 7.37438 7.67770 7.70742 8.19853 8.39649 9.50305 10.08398 10.42587 11.42837 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.001915 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.546960 B =14617.792874 C =16550.736906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.119 4.119 13 C 0.129 3.871 14 N -0.702 5.702 15 C 0.567 3.433 16 O -0.542 6.542 17 C 0.068 3.932 18 C -0.100 4.100 19 C -0.086 4.086 20 C -0.023 4.023 21 C -0.206 4.206 22 C 0.072 3.928 23 N -0.292 5.292 24 N -0.469 5.469 25 H 0.444 0.556 26 C 0.087 3.913 27 C 0.097 3.903 28 N -0.447 5.447 29 C -0.168 4.168 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.413 0.587 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.186 0.814 43 H 0.160 0.840 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 -19.710 -18.512 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.006 3.994 14 N -0.352 5.352 15 C 0.352 3.648 16 O -0.420 6.420 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.112 4.112 20 C -0.027 4.027 21 C -0.219 4.219 22 C -0.116 4.116 23 N -0.113 5.113 24 N -0.175 5.175 25 H 0.289 0.711 26 C -0.063 4.063 27 C -0.065 4.065 28 N -0.157 5.157 29 C -0.209 4.209 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.249 0.751 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.205 0.795 42 H 0.203 0.797 43 H 0.177 0.823 44 H 0.086 0.914 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.570 -19.837 -18.707 28.047 hybrid contribution -0.102 1.090 -0.385 1.161 sum -6.672 -18.747 -19.092 27.577 Atomic orbital electron populations 1.69678 1.05110 1.25610 1.57646 1.24767 0.95551 0.97779 1.02903 0.86100 0.78815 0.84012 0.77157 1.20507 1.21876 1.21872 1.19342 0.91155 0.83981 1.42662 0.90939 1.42181 1.05702 0.99442 1.87101 1.21099 0.95076 0.85590 0.92772 1.23441 1.00482 0.99676 0.95110 1.22708 0.99689 0.92866 0.98534 1.21553 0.98084 0.97254 0.82529 1.45927 1.61536 1.08288 1.19447 1.17837 0.78694 0.83848 0.84454 1.90779 1.51934 1.37660 1.61628 1.21175 1.00480 0.89814 0.95526 1.22026 0.96354 0.98530 0.95197 1.21494 0.97167 0.98536 0.94017 1.19237 0.96619 0.94480 0.92322 1.18766 1.13898 0.92554 0.96650 1.24048 0.96738 0.99683 0.91097 1.77281 1.22951 0.89817 1.21256 1.46270 1.49367 1.05704 1.16184 0.71130 1.22769 0.96414 1.00051 0.87033 1.22745 0.96188 0.96601 0.90917 1.67505 1.08530 1.31909 1.07745 1.23911 0.95659 0.99625 1.01717 0.93529 0.78096 0.91954 0.91310 0.90447 0.88812 0.91613 0.91369 0.75072 0.83287 0.84102 0.79466 0.79708 0.82282 0.91435 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.39 5.31 -52.55 -0.28 -17.67 16 10 C 0.17 3.26 4.57 -67.03 -0.31 2.96 16 11 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 12 C -0.12 -1.82 3.62 -89.81 -0.33 -2.15 16 13 C 0.13 1.79 5.50 -4.04 -0.02 1.77 16 14 N -0.70 -9.61 5.54 -61.22 -0.34 -9.95 16 15 C 0.57 8.10 7.80 -12.29 -0.10 8.01 16 16 O -0.54 -9.01 16.31 5.32 0.09 -8.93 16 17 C 0.07 0.82 6.75 -82.99 -0.56 0.26 16 18 C -0.10 -0.98 9.61 -39.12 -0.38 -1.36 16 19 C -0.09 -0.64 9.68 -39.01 -0.38 -1.02 16 20 C -0.02 -0.17 5.90 -104.64 -0.62 -0.79 16 21 C -0.21 -1.33 6.05 -105.34 -0.64 -1.97 16 22 C 0.07 0.47 11.45 -17.04 -0.20 0.27 16 23 N -0.29 -2.20 12.66 30.82 0.39 -1.81 16 24 N -0.47 -2.28 7.32 30.65 0.22 -2.06 16 25 H 0.44 0.79 8.96 -182.67 -1.64 -0.85 16 26 C 0.09 0.40 11.40 -16.88 -0.19 0.21 16 27 C 0.10 0.83 10.73 -17.22 -0.18 0.64 16 28 N -0.45 -5.06 9.51 -9.54 -0.09 -5.15 16 29 C -0.17 -2.84 7.44 -25.82 -0.19 -3.03 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 10.04 7.90 -40.82 -0.32 9.72 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.08 8.10 -51.92 -0.42 0.66 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 38 H 0.41 5.45 7.79 -40.82 -0.32 5.13 16 39 H 0.15 1.36 7.63 -52.49 -0.40 0.96 16 40 H 0.14 0.63 7.16 -52.49 -0.38 0.25 16 41 H 0.19 0.70 7.41 -52.49 -0.39 0.32 16 42 H 0.19 0.25 7.30 -52.49 -0.38 -0.14 16 43 H 0.16 0.89 7.03 -52.48 -0.37 0.52 16 44 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -35.04 385.84 -10.11 -45.14 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.09 Total: 10.55 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -4.52 Total: -6.01 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.63 Total: -63.72 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.04 -10.11 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091105747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.124 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds