Wall clock time and date at job start Sat Apr 11 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99941 * 2 1 4 4 H 1.48498 * 109.46987 * 270.00045 * 3 2 1 5 5 H 1.48496 * 109.47099 * 30.00286 * 3 2 1 6 6 H 1.48502 * 109.46819 * 150.00362 * 3 2 1 7 7 C 1.38817 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99888 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99479 * 180.02562 * 9 7 2 11 11 C 1.53782 * 113.61309 * 154.99849 * 10 9 7 12 12 C 1.53780 * 87.07876 * 89.11521 * 11 10 9 13 13 C 1.53003 * 113.61395 * 139.98307 * 12 11 10 14 14 N 1.46503 * 109.47293 * 176.52317 * 13 12 11 15 15 C 1.34771 * 119.99827 * 179.97438 * 14 13 12 16 16 O 1.21582 * 120.00626 * 0.02562 * 15 14 13 17 17 C 1.47603 * 119.99757 * 180.02562 * 15 14 13 18 18 C 1.39972 * 120.59358 * 318.76745 * 17 15 14 19 19 C 1.38349 * 118.34870 * 180.02562 * 18 17 15 20 20 C 1.38389 * 119.45112 * 0.27896 * 19 18 17 21 21 N 1.31842 * 121.18097 * 359.42158 * 20 19 18 22 22 C 1.32254 * 121.80538 * 0.59029 * 21 20 19 23 23 N 1.39351 * 119.79978 * 179.72436 * 22 21 20 24 24 C 1.35942 * 126.11016 * 332.42299 * 23 22 21 25 25 C 1.35229 * 107.60327 * 179.89658 * 24 23 22 26 26 C 1.40015 * 107.97368 * 0.37092 * 25 24 23 27 27 N 1.30781 * 108.37826 * 359.76879 * 26 25 24 28 28 C 1.53776 * 87.17623 * 25.38975 * 12 11 10 29 29 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00180 * 359.97438 * 9 7 2 31 31 H 1.09002 * 112.85520 * 23.79795 * 10 9 7 32 32 H 1.08997 * 113.61292 * 334.56592 * 11 10 9 33 33 H 1.08998 * 113.61166 * 203.65873 * 11 10 9 34 34 H 1.09005 * 113.61653 * 270.79528 * 12 11 10 35 35 H 1.09003 * 109.47095 * 56.52959 * 13 12 11 36 36 H 1.08997 * 109.47172 * 296.52639 * 13 12 11 37 37 H 0.97004 * 119.99711 * 0.02562 * 14 13 12 38 38 H 1.07999 * 120.82604 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.27640 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.40884 * 179.72493 * 20 19 18 41 41 H 1.07999 * 126.19616 * 0.03693 * 24 23 22 42 42 H 1.08001 * 126.01619 * 180.13923 * 25 24 23 43 43 H 1.08004 * 125.80872 * 179.75151 * 26 25 24 44 44 H 1.08999 * 113.61309 * 89.15814 * 28 12 11 45 45 H 1.08996 * 113.61675 * 220.05753 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.2597 -4.8291 0.5928 12 6 0.7211 -5.0787 -0.8258 13 6 0.6204 -6.5611 -1.1911 14 7 0.0228 -6.6967 -2.5218 15 6 -0.1647 -7.9202 -3.0548 16 8 0.1617 -8.9116 -2.4312 17 6 -0.7663 -8.0568 -4.3957 18 6 -1.8471 -7.2532 -4.7768 19 6 -2.3754 -7.4205 -6.0444 20 6 -1.8299 -8.3717 -6.8888 21 7 -0.8080 -9.1141 -6.5110 22 6 -0.2656 -8.9946 -5.3107 23 7 0.8101 -9.8051 -4.9531 24 6 1.0760 -11.0454 -5.4418 25 6 2.2050 -11.4875 -4.8430 26 6 2.6404 -10.4957 -3.9558 27 7 1.8073 -9.4897 -4.0209 28 6 1.9988 -4.4009 -1.3481 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0016 31 1 3.0653 -3.5641 0.4045 32 1 0.4928 -4.5195 1.3028 33 1 1.8863 -5.6371 0.9703 34 1 -0.1903 -4.5247 -1.0507 35 1 -0.0030 -7.0742 -0.4589 36 1 1.6167 -7.0032 -1.1935 37 1 -0.2373 -5.9057 -3.0195 38 1 -2.2584 -6.5206 -4.0981 39 1 -3.2092 -6.8168 -6.3709 40 1 -2.2457 -8.5049 -7.8766 41 1 0.4927 -11.5797 -6.1771 42 1 2.6842 -12.4399 -5.0156 43 1 3.5152 -10.5520 -3.3249 44 1 2.8277 -5.0917 -1.5021 45 1 1.8277 -3.7463 -2.2026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091175366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:34 Heat of formation + Delta-G solvation = 136.395426 kcal Electronic energy + Delta-G solvation = -28580.938177 eV Core-core repulsion = 24602.233134 eV Total energy + Delta-G solvation = -3978.705044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83473 -40.42651 -39.32661 -38.32393 -34.69616 -33.94271 -33.33659 -32.88521 -30.54278 -30.23868 -29.74249 -27.43345 -25.07184 -24.90258 -24.40511 -23.63338 -21.85005 -21.32891 -21.19908 -20.62289 -18.77165 -18.47533 -17.75187 -17.20211 -17.07414 -16.00930 -15.78358 -15.49368 -15.13638 -14.91503 -14.78741 -14.39616 -14.20125 -13.98581 -13.78483 -13.66582 -13.49318 -13.15768 -12.94198 -12.89429 -12.80713 -12.23813 -11.90985 -11.40094 -11.05362 -10.91746 -10.85519 -10.72892 -10.49860 -10.43438 -10.30105 -10.19005 -10.01043 -9.76420 -9.70360 -9.45259 -9.37213 -8.92294 -8.86036 -8.59844 -7.01628 -5.82786 -3.11550 0.14631 0.53790 1.83130 1.93337 2.64991 2.72802 3.06838 3.38438 3.40414 3.45954 3.47424 3.91632 4.13979 4.37222 4.43482 4.54243 4.57221 4.75392 4.83940 4.95950 5.07213 5.12903 5.23141 5.24862 5.41880 5.44106 5.50772 5.55806 5.63982 5.73140 5.75104 5.87163 5.90357 5.97112 6.12479 6.23162 6.37294 6.37565 6.45308 6.59771 6.74901 6.82882 6.90513 7.04253 7.09843 7.50256 7.57635 7.67531 8.23778 8.36638 9.47302 10.04945 10.39236 11.39731 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002319 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.913519 B =12073.561756 C =13053.364536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.136 3.864 14 N -0.716 5.716 15 C 0.568 3.432 16 O -0.512 6.512 17 C -0.174 4.174 18 C -0.026 4.026 19 C -0.186 4.186 20 C 0.148 3.852 21 N -0.506 5.506 22 C 0.415 3.585 23 N -0.329 5.329 24 C 0.070 3.930 25 C -0.259 4.259 26 C 0.057 3.943 27 N -0.241 5.241 28 C -0.168 4.168 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.154 0.846 43 H 0.190 0.810 44 H 0.068 0.932 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -21.854 -13.521 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.013 3.987 14 N -0.367 5.367 15 C 0.352 3.648 16 O -0.386 6.386 17 C -0.183 4.183 18 C -0.052 4.052 19 C -0.207 4.207 20 C -0.011 4.011 21 N -0.218 5.218 22 C 0.186 3.814 23 N -0.108 5.108 24 C -0.070 4.070 25 C -0.287 4.287 26 C -0.134 4.134 27 N -0.058 5.058 28 C -0.209 4.209 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.189 0.811 41 H 0.195 0.805 42 H 0.172 0.828 43 H 0.207 0.793 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.193 -21.818 -13.173 25.686 hybrid contribution -0.261 1.021 -0.195 1.071 sum -3.454 -20.797 -13.368 24.963 Atomic orbital electron populations 1.69661 1.05134 1.25764 1.57601 1.24762 0.95548 0.97784 1.02836 0.86168 0.78693 0.83679 0.77533 1.21697 1.21752 1.20679 1.19299 0.91131 0.83976 1.42803 0.90995 1.42171 1.05664 0.99454 1.87148 1.21098 0.95091 0.85563 0.92749 1.23430 1.00483 0.99686 0.95063 1.22710 0.99538 0.92969 0.98614 1.21463 0.98187 0.96901 0.82168 1.45898 1.63617 1.07380 1.19853 1.17569 0.78777 0.83999 0.84492 1.90796 1.49288 1.37218 1.61344 1.20637 1.00365 1.00813 0.96439 1.21807 0.92190 0.95016 0.96189 1.22153 1.02941 1.00938 0.94639 1.22758 0.89185 0.89419 0.99708 1.67024 1.12513 1.27962 1.14347 1.17480 0.86347 0.88867 0.88695 1.45568 1.19914 1.12638 1.32634 1.22787 0.98123 0.86509 0.99569 1.21619 0.99701 1.03044 1.04334 1.24146 0.98792 0.91736 0.98689 1.77754 0.97827 1.23684 1.06535 1.23903 0.95749 0.99589 1.01628 0.93462 0.78141 0.91963 0.91339 0.90442 0.89003 0.91913 0.91352 0.76624 0.83076 0.83175 0.81117 0.80548 0.82788 0.79315 0.91356 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.26 5.31 -52.54 -0.28 -17.54 16 10 C 0.17 3.25 4.57 -67.03 -0.31 2.95 16 11 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 12 C -0.12 -1.79 3.62 -89.81 -0.33 -2.11 16 13 C 0.14 1.87 5.50 -4.04 -0.02 1.85 16 14 N -0.72 -9.29 5.50 -61.33 -0.34 -9.63 16 15 C 0.57 8.22 6.39 -12.44 -0.08 8.14 16 16 O -0.51 -9.05 14.25 5.29 0.08 -8.97 16 17 C -0.17 -2.15 5.77 -104.66 -0.60 -2.75 16 18 C -0.03 -0.22 9.51 -38.89 -0.37 -0.59 16 19 C -0.19 -1.20 10.09 -39.49 -0.40 -1.60 16 20 C 0.15 1.07 11.17 -17.49 -0.20 0.87 16 21 N -0.51 -5.43 10.02 -12.03 -0.12 -5.55 16 22 C 0.41 5.38 7.38 -154.37 -1.14 4.24 16 23 N -0.33 -4.56 3.44 -11.89 -0.04 -4.60 16 24 C 0.07 0.78 11.22 -16.80 -0.19 0.59 16 25 C -0.26 -2.59 10.80 -39.99 -0.43 -3.02 16 26 C 0.06 0.67 12.02 -17.33 -0.21 0.46 16 27 N -0.24 -3.62 8.79 30.65 0.27 -3.35 16 28 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.38 9.91 7.90 -40.82 -0.32 9.58 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 37 H 0.40 4.50 8.06 -40.82 -0.33 4.17 16 38 H 0.15 0.99 7.99 -52.49 -0.42 0.57 16 39 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.19 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -35.46 384.51 -9.92 -45.38 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.08 Total: 12.04 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -4.90 Total: -3.74 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.22 Total: -67.58 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.46 -9.92 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091175366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.775 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds