Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99323 * 3 2 1 6 6 H 1.48492 * 109.47273 * 59.99352 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47863 * 119.99595 * 180.02562 * 15 14 13 18 18 C 1.39651 * 120.09008 * 359.72779 * 17 15 14 19 19 C 1.38017 * 120.09882 * 179.78652 * 18 17 15 20 20 C 1.38159 * 120.27348 * 0.46726 * 19 18 17 21 21 C 1.39414 * 120.17241 * 359.78725 * 20 19 18 22 22 C 1.48414 * 120.05199 * 180.02562 * 21 20 19 23 23 N 1.33973 * 125.65286 * 359.97397 * 22 21 20 24 24 C 1.30678 * 109.78381 * 179.97438 * 23 22 21 25 25 N 1.34525 * 108.29162 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.73942 * 180.02562 * 25 24 23 27 27 N 1.31494 * 125.64839 * 179.67049 * 22 21 20 28 28 C 1.39092 * 119.89726 * 359.97438 * 21 20 19 29 29 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 30 30 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 32 32 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 33 33 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 34 34 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 35 35 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 36 36 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 37 37 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 38 38 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 39 39 H 1.07999 * 119.95113 * 359.97438 * 18 17 15 40 40 H 1.08004 * 119.86641 * 180.20402 * 19 18 17 41 41 H 1.08005 * 119.91699 * 179.75982 * 20 19 18 42 42 H 1.07995 * 125.85547 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.13576 * 179.97438 * 28 21 20 44 44 H 1.09001 * 113.61158 * 203.66864 * 29 10 9 45 45 H 1.08998 * 113.61196 * 334.56885 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1953 -8.8802 -2.5293 17 6 -0.7443 -8.0031 -4.4810 18 6 -1.1332 -6.8579 -5.1793 19 6 -1.6950 -6.9704 -6.4350 20 6 -1.8848 -8.2149 -7.0042 21 6 -1.5056 -9.3658 -6.3149 22 6 -1.7102 -10.7013 -6.9292 23 7 -2.2473 -10.9324 -8.1346 24 6 -2.2791 -12.2183 -8.3655 25 7 -1.7570 -12.8517 -7.2997 26 1 -1.6512 -13.8094 -7.1883 27 7 -1.3893 -11.8535 -6.3827 28 6 -0.9342 -9.2606 -5.0512 29 6 1.2467 -4.8365 0.5617 30 1 -0.4849 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.0559 -3.5695 0.4304 33 1 1.8839 -3.7164 -2.2045 34 1 2.8651 -5.0720 -1.4967 35 1 -0.1652 -4.5095 -1.1102 36 1 1.6445 -6.9821 -1.2693 37 1 0.0275 -7.0720 -0.5308 38 1 -0.2209 -5.8688 -3.0738 39 1 -0.9913 -5.8828 -4.7375 40 1 -1.9914 -6.0821 -6.9731 41 1 -2.3285 -8.2963 -7.9855 42 1 -2.6594 -12.6914 -9.2587 43 1 -0.6394 -10.1498 -4.5136 44 1 1.8648 -5.6494 0.9428 45 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091177333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 109.054972 kcal Electronic energy + Delta-G solvation = -27310.901350 eV Core-core repulsion = 23331.010735 eV Total energy + Delta-G solvation = -3979.890615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50414 -40.30966 -38.89447 -38.13569 -34.74973 -33.68290 -33.17166 -32.28962 -31.50303 -30.39312 -30.01965 -27.41989 -25.06351 -24.33672 -24.30417 -23.54564 -22.56221 -21.60657 -21.42556 -20.13294 -18.99023 -18.38025 -17.78838 -17.21538 -16.40564 -16.12584 -15.92868 -15.63783 -15.39529 -15.14349 -14.84271 -14.47355 -14.16011 -14.03540 -13.91209 -13.49345 -13.41828 -12.91060 -12.86230 -12.62299 -12.26710 -12.05481 -11.91315 -11.59896 -11.38344 -11.04468 -10.93665 -10.86562 -10.56338 -10.49462 -10.43500 -10.20667 -10.12260 -9.82050 -9.70107 -9.47534 -9.30281 -9.01538 -8.91648 -8.87053 -7.00841 -5.81952 -3.10816 0.38685 0.78502 1.33670 2.15681 2.38695 2.94085 3.09633 3.40859 3.47067 3.49029 3.52729 3.69924 4.11546 4.40843 4.51887 4.54955 4.67114 4.76527 4.94302 5.04613 5.07596 5.17526 5.23725 5.34726 5.44782 5.59066 5.62330 5.68828 5.71243 5.76108 5.86658 5.95003 6.01997 6.06761 6.11452 6.13184 6.21828 6.37038 6.39539 6.49512 6.53832 6.59399 6.74275 6.89762 7.04015 7.49346 7.54511 7.68844 8.17569 8.37310 9.48169 10.05737 10.40015 11.40543 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.001731 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.642875 B =16170.455178 C =17129.476268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.168 4.168 12 C -0.120 4.120 13 C 0.131 3.869 14 N -0.718 5.718 15 C 0.556 3.444 16 O -0.540 6.540 17 C -0.136 4.136 18 C -0.068 4.068 19 C -0.129 4.129 20 C -0.052 4.052 21 C -0.030 4.030 22 C 0.271 3.729 23 N -0.535 5.535 24 C 0.265 3.735 25 N -0.483 5.483 26 H 0.444 0.556 27 N -0.300 5.300 28 C -0.025 4.025 29 C -0.147 4.147 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.402 0.598 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.226 0.774 43 H 0.144 0.856 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -24.524 -17.610 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.054 3.946 11 C -0.209 4.209 12 C -0.139 4.139 13 C 0.008 3.992 14 N -0.369 5.369 15 C 0.343 3.657 16 O -0.419 6.419 17 C -0.139 4.139 18 C -0.087 4.087 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.032 4.032 22 C -0.008 4.008 23 N -0.263 5.263 24 C -0.034 4.034 25 N -0.202 5.202 26 H 0.290 0.710 27 N -0.129 5.129 28 C -0.046 4.046 29 C -0.186 4.186 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.242 0.758 43 H 0.162 0.838 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.236 -24.862 -16.664 30.385 hybrid contribution -0.138 0.416 -0.549 0.703 sum -5.374 -24.446 -17.213 30.377 Atomic orbital electron populations 1.69670 1.05129 1.25655 1.57595 1.24759 0.95537 0.97773 1.02820 0.86104 0.78831 0.83989 0.77183 1.20495 1.21857 1.21845 1.19340 0.91168 0.83967 1.42775 0.90935 1.42173 1.05670 0.99430 1.87187 1.21060 0.95042 0.85611 0.92848 1.23934 0.95507 0.99581 1.01909 1.22765 0.99639 0.92931 0.98539 1.21518 0.98100 0.97216 0.82385 1.45983 1.63065 1.07957 1.19897 1.18183 0.78599 0.83600 0.85329 1.90771 1.51216 1.36678 1.63208 1.19878 1.04419 0.93958 0.95660 1.21552 0.94738 0.97976 0.94451 1.21096 1.00401 0.97705 0.95483 1.21406 0.95201 0.90887 0.99713 1.17315 1.03764 0.87777 0.94371 1.22257 0.96157 0.92753 0.89653 1.70502 1.23836 1.15224 1.16730 1.26119 0.94899 0.88657 0.93739 1.48146 1.47827 1.10514 1.13681 0.71008 1.78323 1.24025 0.96412 1.14104 1.21270 0.92899 0.97722 0.92738 1.23419 1.00595 0.99660 0.94972 0.93502 0.78119 0.92051 0.91456 0.91381 0.88848 0.91383 0.91626 0.76255 0.84866 0.84424 0.84202 0.75799 0.83829 0.90410 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.13 5.31 -52.64 -0.28 -17.41 16 10 C 0.17 3.20 4.55 -67.12 -0.31 2.89 16 11 C -0.17 -2.75 7.45 -25.78 -0.19 -2.94 16 12 C -0.12 -1.76 3.64 -89.67 -0.33 -2.09 16 13 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 14 N -0.72 -8.98 5.51 -61.25 -0.34 -9.32 16 15 C 0.56 7.79 7.77 -12.32 -0.10 7.69 16 16 O -0.54 -9.40 16.34 5.33 0.09 -9.31 16 17 C -0.14 -1.61 5.87 -105.01 -0.62 -2.23 16 18 C -0.07 -0.63 9.54 -39.13 -0.37 -1.00 16 19 C -0.13 -1.05 10.02 -39.69 -0.40 -1.45 16 20 C -0.05 -0.47 9.68 -39.17 -0.38 -0.85 16 21 C -0.03 -0.33 5.87 -104.95 -0.62 -0.94 16 22 C 0.27 3.01 7.77 -156.63 -1.22 1.79 16 23 N -0.54 -4.98 10.81 -12.38 -0.13 -5.11 16 24 C 0.27 1.37 13.11 -90.70 -1.19 0.18 16 25 N -0.48 -2.83 7.44 29.52 0.22 -2.61 16 26 H 0.44 0.86 8.96 -182.34 -1.63 -0.77 16 27 N -0.30 -3.21 12.42 32.10 0.40 -2.81 16 28 C -0.03 -0.31 9.22 -38.84 -0.36 -0.67 16 29 C -0.15 -2.32 7.38 -25.92 -0.19 -2.51 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.38 9.86 7.90 -40.82 -0.32 9.54 16 32 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 33 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 34 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.25 6.50 -40.82 -0.27 3.99 16 39 H 0.13 1.00 6.39 -52.49 -0.34 0.66 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.14 1.10 7.82 -52.48 -0.41 0.69 16 42 H 0.23 -0.08 8.06 -52.49 -0.42 -0.50 16 43 H 0.14 1.91 7.42 -52.48 -0.39 1.52 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -36.03 386.42 -12.15 -48.18 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.10 Total: 9.94 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -6.53 Total: -7.56 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: 0.59 Total: -64.07 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.03 -12.15 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091177333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.234 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds