Wall clock time and date at job start Sat Apr 11 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46791 * 299.99323 * 3 2 1 6 6 H 1.48492 * 109.47273 * 59.99352 * 3 2 1 7 7 C 1.38815 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99948 * 179.97438 * 9 7 2 11 11 C 1.53773 * 113.61686 * 254.14005 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.52993 * 113.70060 * 220.01038 * 12 11 10 14 14 N 1.46501 * 109.47405 * 272.53026 * 13 12 11 15 15 C 1.34771 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21546 * 120.00302 * 0.02562 * 15 14 13 17 17 C 1.47863 * 119.99595 * 180.02562 * 15 14 13 18 18 C 1.39616 * 120.11557 * 359.72766 * 17 15 14 19 19 C 1.37979 * 119.98898 * 179.71519 * 18 17 15 20 20 C 1.38267 * 120.21252 * 0.56129 * 19 18 17 21 21 C 1.38916 * 120.23146 * 359.71576 * 20 19 18 22 22 N 1.40217 * 119.99806 * 180.02562 * 21 20 19 23 23 C 1.34719 * 126.84318 * 359.97438 * 22 21 20 24 24 N 1.30846 * 108.03891 * 180.02562 * 23 22 21 25 25 C 1.33260 * 109.84138 * 359.97438 * 24 23 22 26 26 N 1.30757 * 108.99943 * 359.71640 * 25 24 23 27 27 C 1.38598 * 120.00594 * 0.02562 * 21 20 19 28 28 C 1.53781 * 113.61361 * 156.53166 * 10 9 7 29 29 H 0.97000 * 119.99576 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00345 * 359.97438 * 9 7 2 31 31 H 1.09002 * 112.84852 * 25.33765 * 10 9 7 32 32 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 33 33 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 34 34 H 1.08998 * 113.61160 * 89.11169 * 12 11 10 35 35 H 1.09002 * 109.46900 * 32.52907 * 13 12 11 36 36 H 1.08998 * 109.47474 * 152.53098 * 13 12 11 37 37 H 0.96997 * 119.99408 * 0.02562 * 14 13 12 38 38 H 1.08003 * 120.00431 * 359.97438 * 18 17 15 39 39 H 1.07999 * 119.89415 * 180.27335 * 19 18 17 40 40 H 1.08003 * 119.88429 * 179.73759 * 20 19 18 41 41 H 1.08005 * 125.98064 * 0.02562 * 23 22 21 42 42 H 1.07995 * 125.50596 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.10730 * 179.97438 * 27 21 20 44 44 H 1.09001 * 113.61158 * 203.66864 * 28 10 9 45 45 H 1.08998 * 113.61196 * 334.56885 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.0326 -4.3828 -1.3548 12 6 0.7400 -5.0678 -0.8717 13 6 0.6459 -6.5453 -1.2576 14 7 0.0448 -6.6652 -2.5882 15 6 -0.1381 -7.8821 -3.1378 16 8 0.1953 -8.8802 -2.5293 17 6 -0.7443 -8.0031 -4.4810 18 6 -1.1333 -6.8586 -5.1796 19 6 -1.6933 -6.9741 -6.4354 20 6 -1.8818 -8.2217 -7.0010 21 6 -1.5034 -9.3667 -6.3115 22 7 -1.6963 -10.6293 -6.8899 23 6 -2.2327 -10.8911 -8.0977 24 7 -2.2373 -12.1886 -8.2664 25 6 -1.7150 -12.7858 -7.1957 26 7 -1.3630 -11.8728 -6.3284 27 6 -0.9351 -9.2612 -5.0518 28 6 1.2467 -4.8365 0.5617 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 3.0559 -3.5695 0.4304 32 1 1.8839 -3.7164 -2.2045 33 1 2.8651 -5.0720 -1.4967 34 1 -0.1652 -4.5095 -1.1102 35 1 1.6445 -6.9821 -1.2693 36 1 0.0275 -7.0720 -0.5308 37 1 -0.2209 -5.8688 -3.0738 38 1 -0.9920 -5.8827 -4.7389 39 1 -1.9896 -6.0876 -6.9762 40 1 -2.3246 -8.3062 -7.9825 41 1 -2.5955 -10.1582 -8.8033 42 1 -1.5964 -13.8515 -7.0673 43 1 -0.6406 -10.1503 -4.5141 44 1 1.8648 -5.6494 0.9428 45 1 0.4640 -4.5360 1.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091226138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:41 Heat of formation + Delta-G solvation = 122.858469 kcal Electronic energy + Delta-G solvation = -27450.368833 eV Core-core repulsion = 23471.076782 eV Total energy + Delta-G solvation = -3979.292050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78716 -40.53931 -39.11812 -38.34251 -34.98125 -34.55908 -33.26105 -32.20302 -31.45784 -30.42108 -29.87089 -27.49470 -25.12900 -24.88143 -24.32868 -23.60085 -22.50084 -21.88079 -21.53477 -20.63736 -19.22197 -18.32064 -17.42011 -17.04974 -16.79837 -16.33067 -16.28511 -15.75342 -15.48557 -15.09233 -14.90444 -14.63844 -14.35955 -14.23012 -14.17014 -13.70546 -13.58937 -13.12997 -12.96183 -12.88007 -12.41281 -12.29055 -11.97331 -11.89335 -11.46686 -11.33245 -11.09369 -10.90460 -10.60416 -10.55690 -10.37364 -10.32419 -10.16971 -9.91406 -9.74630 -9.63463 -9.53874 -9.11218 -8.95443 -8.93160 -7.05356 -5.86130 -3.15125 0.05841 0.47332 1.42757 1.64924 2.41042 2.56437 2.95443 3.37554 3.39247 3.43982 3.45815 3.72848 3.89380 4.17233 4.28514 4.40267 4.50944 4.52276 4.58539 4.81893 4.92949 4.97698 5.02940 5.16788 5.28561 5.40241 5.48766 5.55126 5.64248 5.67367 5.73149 5.80239 5.82520 5.87855 5.89747 6.01357 6.04026 6.16014 6.29564 6.31800 6.45576 6.53086 6.68193 6.83446 6.98293 7.34668 7.49202 7.64907 8.01986 8.33098 9.44046 10.01222 10.35473 11.36324 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.001754 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.409354 B =15958.030144 C =16920.363523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.168 4.168 12 C -0.120 4.120 13 C 0.130 3.870 14 N -0.715 5.715 15 C 0.554 3.446 16 O -0.535 6.535 17 C -0.107 4.107 18 C -0.086 4.086 19 C -0.097 4.097 20 C -0.111 4.111 21 C 0.137 3.863 22 N -0.329 5.329 23 C 0.260 3.740 24 N -0.537 5.537 25 C 0.206 3.794 26 N -0.309 5.309 27 C -0.054 4.054 28 C -0.147 4.147 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.224 0.776 42 H 0.224 0.776 43 H 0.152 0.848 44 H 0.078 0.922 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -19.382 -16.257 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.054 3.946 11 C -0.210 4.210 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.366 5.366 15 C 0.340 3.660 16 O -0.413 6.413 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.132 4.132 21 C 0.045 3.955 22 N -0.113 5.113 23 C -0.035 4.035 24 N -0.263 5.263 25 C -0.096 4.096 26 N -0.134 5.134 27 C -0.075 4.075 28 C -0.186 4.186 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.240 0.760 42 H 0.240 0.760 43 H 0.170 0.830 44 H 0.096 0.904 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.896 -20.269 -15.356 25.897 hybrid contribution -0.161 1.465 -0.463 1.545 sum -5.057 -18.805 -15.819 25.089 Atomic orbital electron populations 1.69668 1.05136 1.25685 1.57560 1.24761 0.95543 0.97793 1.02773 0.86103 0.78839 0.83951 0.77203 1.20482 1.21851 1.21815 1.19338 0.91175 0.83952 1.42839 0.90923 1.42172 1.05661 0.99430 1.87186 1.21058 0.95079 0.85610 0.92810 1.23939 0.95465 0.99590 1.01957 1.22770 0.99670 0.92812 0.98644 1.21553 0.98163 0.97364 0.82189 1.45982 1.62862 1.07818 1.19982 1.18108 0.78891 0.83777 0.85217 1.90796 1.50849 1.36630 1.63003 1.19914 1.02241 0.93406 0.95534 1.21549 0.96086 0.98298 0.94642 1.20980 0.98441 0.96946 0.95148 1.21005 1.00981 0.90779 1.00435 1.17410 1.02841 0.80929 0.94319 1.47746 1.44587 1.05071 1.13914 1.26219 0.94906 0.94745 0.87632 1.70642 1.24155 1.04321 1.27196 1.26230 0.95182 1.01056 0.87174 1.78253 1.24354 0.88266 1.22517 1.21001 0.95350 0.98601 0.92526 1.23422 1.00616 0.99692 0.94912 0.93487 0.78128 0.92011 0.91455 0.91367 0.88829 0.91263 0.91505 0.76207 0.84339 0.83692 0.84498 0.76019 0.75956 0.83008 0.90377 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -16.76 5.31 -52.64 -0.28 -17.04 16 10 C 0.17 3.11 4.55 -67.12 -0.31 2.81 16 11 C -0.17 -2.64 7.45 -25.78 -0.19 -2.83 16 12 C -0.12 -1.67 3.64 -89.67 -0.33 -2.00 16 13 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 14 N -0.72 -8.17 5.51 -61.25 -0.34 -8.51 16 15 C 0.55 7.13 7.77 -12.32 -0.10 7.03 16 16 O -0.53 -8.85 16.34 5.33 0.09 -8.76 16 17 C -0.11 -1.10 5.87 -104.99 -0.62 -1.72 16 18 C -0.09 -0.63 9.54 -39.16 -0.37 -1.01 16 19 C -0.10 -0.53 10.02 -39.67 -0.40 -0.93 16 20 C -0.11 -0.63 9.47 -39.32 -0.37 -1.00 16 21 C 0.14 1.21 6.69 -83.64 -0.56 0.65 16 22 N -0.33 -3.06 3.82 -11.84 -0.05 -3.11 16 23 C 0.26 1.86 11.98 -90.38 -1.08 0.78 16 24 N -0.54 -4.84 11.19 -15.75 -0.18 -5.02 16 25 C 0.21 1.79 13.03 -91.76 -1.20 0.60 16 26 N -0.31 -3.35 12.05 29.30 0.35 -3.00 16 27 C -0.05 -0.58 9.23 -38.99 -0.36 -0.94 16 28 C -0.15 -2.24 7.38 -25.92 -0.19 -2.43 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.38 9.65 7.90 -40.82 -0.32 9.33 16 31 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.07 0.97 7.91 -51.93 -0.41 0.55 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 3.76 6.50 -40.82 -0.27 3.49 16 38 H 0.14 0.79 6.40 -52.48 -0.34 0.45 16 39 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.14 0.31 6.79 -52.48 -0.36 -0.04 16 41 H 0.22 0.50 7.09 -52.48 -0.37 0.13 16 42 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.15 1.94 7.33 -52.49 -0.38 1.56 16 44 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -34.92 384.57 -11.02 -45.94 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.78 Total: 9.87 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -6.34 Total: -6.45 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.24 Total: -63.08 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.92 -11.02 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091226138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.800 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds