Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47493 * 300.00084 * 3 2 1 6 6 H 1.48501 * 109.47246 * 60.00244 * 3 2 1 7 7 C 1.38817 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00053 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00219 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61550 * 154.99788 * 10 9 7 12 12 C 1.53781 * 87.07884 * 89.12154 * 11 10 9 13 13 C 1.52999 * 113.61829 * 139.98136 * 12 11 10 14 14 N 1.46491 * 109.47148 * 176.52649 * 13 12 11 15 15 C 1.34781 * 119.99722 * 179.97438 * 14 13 12 16 16 O 1.21624 * 120.00114 * 4.95868 * 15 14 13 17 17 C 1.47150 * 119.99895 * 184.95845 * 15 14 13 18 18 C 1.37079 * 127.21308 * 353.95629 * 17 15 14 19 19 N 1.33314 * 106.37206 * 180.24073 * 18 17 15 20 20 N 1.28504 * 109.50063 * 359.75525 * 19 18 17 21 21 N 1.28711 * 110.66940 * 0.02562 * 20 19 18 22 22 C 1.40080 * 126.06156 * 179.97438 * 21 20 19 23 23 C 1.38873 * 120.06616 * 315.62222 * 22 21 20 24 24 C 1.38111 * 119.92781 * 180.02562 * 23 22 21 25 25 C 1.38287 * 120.06994 * 359.97438 * 24 23 22 26 26 C 1.38282 * 120.14037 * 0.02562 * 25 24 23 27 27 C 1.38105 * 120.06777 * 0.02562 * 26 25 24 28 28 C 1.53782 * 87.17316 * 25.38842 * 12 11 10 29 29 H 0.97004 * 119.99475 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00226 * 0.02562 * 9 7 2 31 31 H 1.09008 * 112.84686 * 23.80494 * 10 9 7 32 32 H 1.08997 * 113.61503 * 334.57307 * 11 10 9 33 33 H 1.09000 * 113.61482 * 203.66968 * 11 10 9 34 34 H 1.09010 * 113.61396 * 270.80278 * 12 11 10 35 35 H 1.09001 * 109.46815 * 56.52969 * 13 12 11 36 36 H 1.08992 * 109.46790 * 296.53031 * 13 12 11 37 37 H 0.97000 * 120.00297 * 0.02562 * 14 13 12 38 38 H 1.08001 * 126.81374 * 359.97438 * 18 17 15 39 39 H 1.07998 * 120.03195 * 0.03984 * 23 22 21 40 40 H 1.07997 * 119.96124 * 179.72209 * 24 23 22 41 41 H 1.08003 * 119.92819 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.96669 * 180.02562 * 26 25 24 43 43 H 1.08005 * 120.03212 * 180.02562 * 27 26 25 44 44 H 1.09003 * 113.61080 * 89.15949 * 28 12 11 45 45 H 1.09003 * 113.61344 * 220.06410 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.2599 -4.8288 0.5950 12 6 0.7203 -5.0791 -0.8231 13 6 0.6194 -6.5616 -1.1877 14 7 0.0209 -6.6977 -2.5179 15 6 -0.1670 -7.9215 -3.0503 16 8 0.0759 -8.9149 -2.3919 17 6 -0.6662 -8.0558 -4.4280 18 6 -1.0932 -7.0509 -5.2567 19 7 -1.4575 -7.6346 -6.3985 20 7 -1.2737 -8.9033 -6.3093 21 7 -0.7993 -9.2135 -5.1538 22 6 -0.4802 -10.5043 -4.7129 23 6 -1.3522 -11.5576 -4.9549 24 6 -1.0350 -12.8290 -4.5184 25 6 0.1497 -13.0537 -3.8415 26 6 1.0202 -12.0069 -3.5990 27 6 0.7082 -10.7331 -4.0319 28 6 1.9977 -4.4016 -1.3466 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 3.0655 -3.5640 0.4049 32 1 0.4936 -4.5189 1.3054 33 1 1.8867 -5.6367 0.9726 34 1 -0.1912 -4.5250 -1.0476 35 1 -0.0036 -7.0744 -0.4548 36 1 1.6156 -7.0036 -1.1906 37 1 -0.2395 -5.9070 -3.0158 38 1 -1.1316 -5.9960 -5.0282 39 1 -2.2773 -11.3828 -5.4840 40 1 -1.7149 -13.6477 -4.7024 41 1 0.3953 -14.0487 -3.5008 42 1 1.9449 -12.1857 -3.0704 43 1 1.3887 -9.9161 -3.8425 44 1 2.8266 -5.0925 -1.5008 45 1 1.8260 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091258256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 112.738307 kcal Electronic energy + Delta-G solvation = -28256.574280 eV Core-core repulsion = 24276.843386 eV Total energy + Delta-G solvation = -3979.730894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.71529 -40.91912 -40.27773 -39.76811 -36.27023 -35.67584 -35.00052 -32.99976 -32.13614 -31.82822 -31.02607 -28.83577 -26.39896 -26.04803 -25.41254 -24.88240 -23.85871 -23.15233 -22.52901 -21.57595 -20.19383 -19.61479 -19.26080 -18.29001 -17.92249 -17.44939 -17.17113 -16.67142 -16.38901 -16.14521 -15.91287 -15.74859 -15.60720 -15.23344 -14.93305 -14.74087 -14.60320 -14.43700 -14.08243 -13.74706 -13.33806 -13.25896 -12.94029 -12.90768 -12.87012 -12.65813 -12.45654 -12.42138 -12.11316 -12.03907 -11.80761 -11.62548 -11.45900 -11.27595 -10.91926 -10.81426 -10.78674 -10.17279 -10.02290 -9.82472 -8.97172 -7.94247 -5.21656 -0.66027 0.24892 0.31451 0.85087 1.07020 1.48863 1.49561 1.59054 1.87241 1.94384 2.56858 2.59797 3.17417 3.33139 3.39169 3.60258 3.74429 3.77521 3.79444 3.81482 3.90580 4.09576 4.13397 4.16690 4.31996 4.35985 4.39330 4.43376 4.50829 4.73938 4.77384 4.78294 4.91220 4.97345 5.03192 5.11453 5.19261 5.20665 5.22885 5.39154 5.40999 5.41594 5.46465 5.56133 5.70138 5.85106 6.26746 6.30081 6.87631 7.06043 7.35284 8.13464 8.34734 9.29036 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.002045 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.657916 B =13686.558582 C =14639.857377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.141 3.859 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.144 3.856 14 N -0.694 5.694 15 C 0.593 3.407 16 O -0.549 6.549 17 C -0.078 4.078 18 C 0.017 3.983 19 N -0.290 5.290 20 N -0.073 5.073 21 N -0.206 5.206 22 C 0.069 3.931 23 C -0.101 4.101 24 C -0.111 4.111 25 C -0.089 4.089 26 C -0.114 4.114 27 C -0.071 4.071 28 C -0.154 4.154 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.415 0.585 38 H 0.236 0.764 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -27.819 -7.545 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.031 3.969 11 C -0.172 4.172 12 C -0.122 4.122 13 C 0.021 3.979 14 N -0.345 5.345 15 C 0.376 3.624 16 O -0.427 6.427 17 C -0.211 4.211 18 C -0.143 4.143 19 N -0.152 5.152 20 N -0.052 5.052 21 N 0.003 4.997 22 C -0.020 4.020 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.092 4.092 28 C -0.194 4.194 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.252 0.748 38 H 0.252 0.748 39 H 0.151 0.849 40 H 0.184 0.816 41 H 0.185 0.815 42 H 0.173 0.827 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.278 -28.867 -8.446 30.079 hybrid contribution -0.066 2.312 0.644 2.401 sum 0.212 -26.555 -7.802 27.678 Atomic orbital electron populations 1.69808 1.06470 1.25896 1.59683 1.25515 0.96368 1.00942 1.03987 0.85125 0.78317 0.80130 0.76504 1.19072 1.22245 1.22306 1.19690 0.91500 0.85204 1.40632 0.90584 1.42310 1.05355 1.00568 1.87573 1.21444 0.95047 0.84911 0.95469 1.23340 0.99935 0.98632 0.95334 1.22513 0.98506 0.93567 0.97602 1.21448 0.98617 0.95870 0.81951 1.45662 1.62003 1.06981 1.19884 1.16614 0.77997 0.84446 0.83298 1.90849 1.52640 1.37373 1.61867 1.22261 1.14092 0.87001 0.97724 1.24566 0.99039 1.02097 0.88639 1.74908 1.18927 0.98547 1.22833 1.78358 1.14561 1.10639 1.01616 1.44927 1.38701 1.06964 1.09137 1.17906 0.98351 0.80274 1.05507 1.21218 0.98630 0.92470 0.99812 1.21443 0.98174 0.95756 0.97555 1.21822 0.92865 1.00669 0.95334 1.21377 1.01548 0.90892 0.99427 1.21060 0.93824 0.98954 0.95327 1.23752 0.97338 0.99264 0.99070 0.94102 0.79310 0.92336 0.92435 0.87399 0.89788 0.91000 0.90268 0.74786 0.74754 0.84883 0.81648 0.81534 0.82663 0.86325 0.88828 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -12.70 9.97 84.04 0.84 -11.86 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -33.97 5.31 -320.17 -1.70 -35.67 16 10 C 0.14 4.98 4.57 45.57 0.21 5.19 16 11 C -0.13 -3.61 7.39 31.12 0.23 -3.38 16 12 C -0.10 -2.52 3.62 -10.27 -0.04 -2.56 16 13 C 0.14 2.90 5.50 86.38 0.48 3.38 16 14 N -0.69 -13.37 5.55 -466.67 -2.59 -15.95 16 15 C 0.59 13.64 7.43 86.58 0.64 14.29 16 16 O -0.55 -14.93 13.20 -4.11 -0.05 -14.99 16 17 C -0.08 -1.82 6.79 40.36 0.27 -1.55 16 18 C 0.02 0.35 11.55 84.20 0.97 1.32 16 19 N -0.29 -7.69 12.34 -57.46 -0.71 -8.40 16 20 N -0.07 -2.00 12.95 37.02 0.48 -1.52 16 21 N -0.21 -5.21 3.48 -176.70 -0.62 -5.83 16 22 C 0.07 1.55 5.89 38.12 0.22 1.78 16 23 C -0.10 -1.82 9.82 22.39 0.22 -1.60 16 24 C -0.11 -1.29 10.04 22.25 0.22 -1.07 16 25 C -0.09 -0.91 10.04 22.29 0.22 -0.69 16 26 C -0.11 -1.62 10.04 22.25 0.22 -1.39 16 27 C -0.07 -1.46 7.43 22.39 0.17 -1.29 16 28 C -0.15 -4.33 7.44 31.18 0.23 -4.10 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.37 18.97 7.90 -92.71 -0.73 18.24 16 31 H 0.06 2.09 8.10 -2.38 -0.02 2.07 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.54 7.87 -2.39 -0.02 1.52 16 37 H 0.42 6.58 7.51 -92.71 -0.70 5.88 16 38 H 0.24 2.98 7.57 -2.91 -0.02 2.96 16 39 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.12 2.67 6.74 -2.91 -0.02 2.65 16 44 H 0.09 2.19 7.92 -2.39 -0.02 2.17 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.71 382.43 2.32 -69.39 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.39 Total: 30.39 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.58 Total: -7.31 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -4.85 Total: -124.59 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.05 Total: -14.99 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.71 2.32 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091258256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.133 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds