Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99586 * 2 1 4 4 H 1.48504 * 109.47102 * 269.99661 * 3 2 1 5 5 H 1.48492 * 109.47173 * 30.00148 * 3 2 1 6 6 H 1.48504 * 109.46801 * 150.00053 * 3 2 1 7 7 C 1.38810 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99844 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00087 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61366 * 204.99652 * 10 9 7 12 12 C 1.53782 * 87.08295 * 219.93482 * 11 10 9 13 13 C 1.52998 * 113.61595 * 139.98343 * 12 11 10 14 14 N 1.46505 * 109.46828 * 176.52793 * 13 12 11 15 15 C 1.34777 * 119.99590 * 179.97438 * 14 13 12 16 16 O 1.21575 * 120.00363 * 0.02562 * 15 14 13 17 17 C 1.47676 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.39698 * 120.07656 * 180.02562 * 17 15 14 19 19 C 1.37740 * 119.91635 * 179.97438 * 18 17 15 20 20 C 1.39022 * 120.07867 * 359.97438 * 19 18 17 21 21 N 1.39925 * 119.91627 * 180.02562 * 20 19 18 22 22 C 1.36361 * 127.11780 * 359.68229 * 21 20 19 23 23 N 1.30500 * 107.19446 * 179.89450 * 22 21 20 24 24 N 1.28537 * 109.92167 * 0.38303 * 23 22 21 25 25 C 1.30496 * 109.92009 * 359.75741 * 24 23 22 26 26 C 1.39020 * 120.16282 * 0.27232 * 20 19 18 27 27 C 1.37739 * 120.08297 * 359.45399 * 26 20 19 28 28 C 1.53782 * 87.17416 * 25.39139 * 12 11 10 29 29 H 0.96998 * 120.00418 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00217 * 359.97438 * 9 7 2 31 31 H 1.08995 * 112.85023 * 336.19532 * 10 9 7 32 32 H 1.09001 * 113.61543 * 105.38964 * 11 10 9 33 33 H 1.08994 * 113.61707 * 334.48039 * 11 10 9 34 34 H 1.09003 * 113.61606 * 270.80338 * 12 11 10 35 35 H 1.08993 * 109.47102 * 56.53264 * 13 12 11 36 36 H 1.08997 * 109.47161 * 296.52946 * 13 12 11 37 37 H 0.96997 * 120.00506 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.04351 * 0.02562 * 18 17 15 39 39 H 1.08001 * 119.95928 * 179.97438 * 19 18 17 40 40 H 1.07996 * 126.39764 * 0.04073 * 22 21 20 41 41 H 1.07997 * 126.40374 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.95698 * 179.70292 * 26 20 19 43 43 H 1.07998 * 120.04314 * 180.24772 * 27 26 20 44 44 H 1.08997 * 113.61275 * 89.16018 * 28 12 11 45 45 H 1.09002 * 113.61309 * 220.06485 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.2607 -4.8285 -0.5982 12 6 1.8494 -5.6983 0.5251 13 6 0.8472 -6.6872 1.1237 14 7 1.5212 -7.5217 2.1216 15 6 0.8302 -8.4703 2.7843 16 8 -0.3522 -8.6339 2.5537 17 6 1.5097 -9.3119 3.7897 18 6 0.7953 -10.2960 4.4772 19 6 1.4325 -11.0794 5.4139 20 6 2.7850 -10.8920 5.6751 21 7 3.4291 -11.6901 6.6270 22 6 2.8739 -12.6814 7.3810 23 7 3.8211 -13.1693 8.1346 24 7 4.9236 -12.5479 7.9097 25 6 4.7403 -11.6335 6.9969 26 6 3.4980 -9.9102 4.9966 27 6 2.8688 -9.1268 4.0545 28 6 2.0021 -4.4049 1.3428 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 3.0659 -3.5636 -0.4062 32 1 1.5920 -5.1195 -1.5950 33 1 0.1804 -4.7007 -0.5306 34 1 2.7995 -6.1645 0.2639 35 1 0.4447 -7.3201 0.3329 36 1 0.0343 -6.1380 1.5986 37 1 2.4647 -7.3915 2.3053 38 1 -0.2552 -10.4429 4.2739 39 1 0.8807 -11.8401 5.9461 40 1 1.8436 -13.0042 7.3571 41 1 5.4874 -10.9579 6.6074 42 1 4.5475 -9.7643 5.2056 43 1 3.4243 -8.3669 3.5249 44 1 1.1249 -4.1611 1.9420 45 1 2.9312 -4.3545 1.9107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091282617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 111.072389 kcal Electronic energy + Delta-G solvation = -27187.719952 eV Core-core repulsion = 23207.916819 eV Total energy + Delta-G solvation = -3979.803133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.82005 -40.72919 -39.29513 -38.42542 -35.48943 -34.94615 -33.40669 -32.17978 -31.07953 -30.91953 -30.16813 -27.54100 -25.26809 -25.15323 -24.34484 -23.86922 -22.73335 -21.77791 -21.16576 -20.88521 -19.47628 -19.20631 -18.08629 -17.09431 -16.76922 -16.57937 -16.38665 -15.73251 -15.59636 -15.39507 -14.93441 -14.86429 -14.69858 -14.37541 -14.19565 -13.87589 -13.65968 -13.38253 -13.32279 -12.97685 -12.12695 -12.03598 -11.93276 -11.88430 -11.76104 -11.48454 -11.30151 -11.07313 -10.89599 -10.61672 -10.43574 -10.21142 -10.09330 -10.07390 -9.90735 -9.88432 -9.57831 -9.35378 -9.11152 -8.92602 -7.02250 -5.83518 -3.12745 -0.22146 0.52370 1.30473 1.69333 2.28649 2.41342 2.84873 3.23121 3.38752 3.43943 3.45829 3.68616 3.81881 3.94724 4.07471 4.20095 4.35712 4.48401 4.53232 4.58274 4.79736 4.86483 4.89590 4.94503 5.12413 5.13016 5.35168 5.35905 5.39332 5.40867 5.56246 5.63235 5.71121 5.75598 5.83918 5.84521 6.02053 6.10832 6.21637 6.26339 6.31104 6.32835 6.50182 6.73535 7.02943 7.21708 7.63722 7.90235 8.05193 8.34866 9.46044 10.03849 10.37825 11.38711 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.001629 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.834529 B =17179.247628 C =18048.806044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.717 5.717 15 C 0.553 3.447 16 O -0.534 6.534 17 C -0.129 4.129 18 C -0.032 4.032 19 C -0.135 4.135 20 C 0.149 3.851 21 N -0.432 5.432 22 C 0.162 3.838 23 N -0.290 5.290 24 N -0.289 5.289 25 C 0.162 3.838 26 C -0.133 4.133 27 C -0.057 4.057 28 C -0.162 4.162 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.078 0.922 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -25.127 9.443 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.368 5.368 15 C 0.339 3.661 16 O -0.412 6.412 17 C -0.133 4.133 18 C -0.051 4.051 19 C -0.155 4.155 20 C 0.056 3.944 21 N -0.119 5.119 22 C -0.124 4.124 23 N -0.126 5.126 24 N -0.126 5.126 25 C -0.124 4.124 26 C -0.153 4.153 27 C -0.077 4.077 28 C -0.203 4.203 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.240 0.760 41 H 0.241 0.759 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.256 -25.951 10.345 28.629 hybrid contribution -0.029 1.828 -0.823 2.005 sum 6.226 -24.123 9.522 26.671 Atomic orbital electron populations 1.69658 1.05147 1.25809 1.57298 1.24774 0.95523 0.97815 1.02725 0.86191 0.78653 0.83784 0.77548 1.21653 1.21740 1.20745 1.19297 0.91069 0.84241 1.43147 0.91088 1.42406 1.05770 0.99872 1.86951 1.21542 0.95333 0.85072 0.92684 1.23447 1.01100 0.96941 0.96685 1.22652 0.98349 0.94376 0.99364 1.21518 0.95540 0.91974 0.90149 1.45980 1.13799 1.35813 1.41185 1.18103 0.86592 0.80332 0.81047 1.90814 1.15156 1.69383 1.65839 1.20189 0.94261 0.99128 0.99727 1.21198 1.00985 0.91285 0.91646 1.20848 0.91862 1.02160 1.00591 1.17924 0.92585 0.92870 0.91025 1.44334 1.10074 1.27572 1.29965 1.26863 1.02405 0.90244 0.92887 1.74275 0.95773 1.22024 1.20573 1.74275 1.18360 1.06328 1.13658 1.26866 0.85273 1.02186 0.98058 1.20785 1.00776 0.95885 0.97889 1.21242 0.93385 0.97577 0.95457 1.23994 1.01351 0.94938 1.00029 0.93409 0.78051 0.90669 0.91920 0.90043 0.89353 0.91416 0.90858 0.76539 0.83136 0.84164 0.75956 0.75933 0.84165 0.84050 0.90315 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -17.14 5.41 -52.55 -0.28 -17.42 16 10 C 0.17 3.01 4.48 -67.02 -0.30 2.71 16 11 C -0.14 -2.08 7.40 -25.92 -0.19 -2.27 16 12 C -0.13 -1.50 3.75 -89.81 -0.34 -1.84 16 13 C 0.13 1.49 5.50 -4.04 -0.02 1.47 16 14 N -0.72 -6.66 5.51 -61.30 -0.34 -6.99 16 15 C 0.55 5.86 7.77 -12.41 -0.10 5.77 16 16 O -0.53 -7.73 16.34 5.30 0.09 -7.64 16 17 C -0.13 -0.97 5.87 -104.95 -0.62 -1.59 16 18 C -0.03 -0.21 9.58 -39.22 -0.38 -0.58 16 19 C -0.13 -0.66 9.46 -39.47 -0.37 -1.03 16 20 C 0.15 0.79 6.65 -83.58 -0.56 0.23 16 21 N -0.43 -2.62 2.99 -63.17 -0.19 -2.81 16 22 C 0.16 1.06 12.06 -89.16 -1.08 -0.02 16 23 N -0.29 -2.95 12.19 29.85 0.36 -2.58 16 24 N -0.29 -2.95 12.19 29.85 0.36 -2.58 16 25 C 0.16 1.05 12.06 -89.16 -1.08 -0.02 16 26 C -0.13 -0.57 9.46 -39.47 -0.37 -0.95 16 27 C -0.06 -0.29 9.53 -39.22 -0.37 -0.66 16 28 C -0.16 -2.43 7.45 -25.82 -0.19 -2.62 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.39 9.92 7.92 -40.82 -0.32 9.60 16 31 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 37 H 0.40 2.59 6.50 -40.82 -0.27 2.33 16 38 H 0.15 0.99 7.64 -52.49 -0.40 0.59 16 39 H 0.14 0.33 6.84 -52.49 -0.36 -0.02 16 40 H 0.22 0.52 7.17 -52.49 -0.38 0.14 16 41 H 0.22 0.51 7.17 -52.49 -0.38 0.13 16 42 H 0.14 0.26 6.84 -52.49 -0.36 -0.10 16 43 H 0.14 0.41 6.39 -52.49 -0.34 0.07 16 44 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -35.90 382.22 -10.43 -46.33 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.69 Total: 6.61 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -6.21 Total: -8.62 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.64 Total: -59.26 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.90 -10.43 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091282617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.404 kcal (2) G-P(sol) polarization free energy of solvation -35.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds