Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86790 * 120.00398 * 2 1 4 4 H 1.48501 * 109.47507 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47031 * 300.00043 * 3 2 1 6 6 H 1.48502 * 109.47424 * 59.99654 * 3 2 1 7 7 C 1.38815 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00066 * 179.97438 * 9 7 2 11 11 C 1.53784 * 113.61503 * 155.00060 * 10 9 7 12 12 C 1.53776 * 87.08153 * 89.11553 * 11 10 9 13 13 C 1.53003 * 113.61544 * 139.98192 * 12 11 10 14 14 N 1.46498 * 109.47036 * 176.52903 * 13 12 11 15 15 C 1.34777 * 119.99603 * 180.02562 * 14 13 12 16 16 O 1.21550 * 120.00143 * 359.97438 * 15 14 13 17 17 C 1.47863 * 119.99892 * 179.97438 * 15 14 13 18 18 C 1.39611 * 120.11242 * 359.97438 * 17 15 14 19 19 C 1.37974 * 119.98341 * 180.02562 * 18 17 15 20 20 C 1.38269 * 120.21564 * 359.97438 * 19 18 17 21 21 C 1.38899 * 120.22709 * 359.97438 * 20 19 18 22 22 N 1.40275 * 119.99291 * 179.97438 * 21 20 19 23 23 C 1.36121 * 125.93949 * 4.71583 * 22 21 20 24 24 C 1.35367 * 106.04790 * 179.84587 * 23 22 21 25 25 N 1.33781 * 106.53644 * 0.40825 * 24 23 22 26 26 N 1.28600 * 109.06263 * 359.73592 * 25 24 23 27 27 C 1.38580 * 120.01585 * 0.27313 * 21 20 19 28 28 C 1.53783 * 87.17447 * 25.38885 * 12 11 10 29 29 H 0.97001 * 119.99615 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00404 * 359.97438 * 9 7 2 31 31 H 1.08997 * 112.84852 * 23.80446 * 10 9 7 32 32 H 1.09004 * 113.61235 * 334.56706 * 11 10 9 33 33 H 1.09000 * 113.61504 * 203.66487 * 11 10 9 34 34 H 1.08999 * 113.61391 * 270.79737 * 12 11 10 35 35 H 1.09001 * 109.46656 * 56.52651 * 13 12 11 36 36 H 1.08996 * 109.47093 * 296.53128 * 13 12 11 37 37 H 0.96996 * 120.00540 * 359.97438 * 14 13 12 38 38 H 1.08004 * 120.01172 * 359.97180 * 18 17 15 39 39 H 1.08001 * 119.88778 * 179.97438 * 19 18 17 40 40 H 1.08004 * 119.87946 * 180.02562 * 20 19 18 41 41 H 1.07997 * 126.97315 * 0.02562 * 23 22 21 42 42 H 1.08001 * 126.73169 * 180.14493 * 24 23 22 43 43 H 1.07999 * 120.10758 * 179.74822 * 27 21 20 44 44 H 1.08998 * 113.60983 * 89.15740 * 28 12 11 45 45 H 1.08994 * 113.61232 * 220.05742 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.2599 -4.8288 0.5960 12 6 0.7202 -5.0791 -0.8220 13 6 0.6192 -6.5616 -1.1866 14 7 0.0207 -6.6977 -2.5168 15 6 -0.1682 -7.9216 -3.0487 16 8 0.1585 -8.9124 -2.4250 17 6 -0.7728 -8.0590 -4.3910 18 6 -1.1494 -6.9226 -5.1093 19 6 -1.7139 -7.0539 -6.3614 20 6 -1.9080 -8.3086 -6.9091 21 6 -1.5356 -9.4451 -6.2027 22 7 -1.7353 -10.7156 -6.7628 23 6 -2.1968 -10.9721 -8.0174 24 6 -2.2293 -12.3202 -8.1358 25 7 -1.8034 -12.8154 -6.9683 26 7 -1.5191 -11.8417 -6.1778 27 6 -0.9725 -9.3244 -4.9422 28 6 1.9976 -4.4015 -1.3456 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 3.0654 -3.5639 0.4059 32 1 0.4935 -4.5189 1.3065 33 1 1.8867 -5.6367 0.9736 34 1 -0.1913 -4.5251 -1.0464 35 1 -0.0036 -7.0744 -0.4536 36 1 1.6155 -7.0037 -1.1895 37 1 -0.2404 -5.9071 -3.0144 38 1 -0.9998 -5.9409 -4.6846 39 1 -2.0050 -6.1738 -6.9155 40 1 -2.3499 -8.4051 -7.8898 41 1 -2.4772 -10.2472 -8.7672 42 1 -2.5422 -12.8852 -9.0014 43 1 -0.6862 -10.2073 -4.3900 44 1 2.8264 -5.0924 -1.4998 45 1 1.8258 -3.7473 -2.2002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091392440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 133.301025 kcal Electronic energy + Delta-G solvation = -27491.495384 eV Core-core repulsion = 23512.656157 eV Total energy + Delta-G solvation = -3978.839227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.86677 -40.63587 -39.19533 -38.38581 -35.21927 -34.76197 -33.28825 -32.25606 -31.30992 -30.65693 -30.07242 -27.55364 -25.13928 -24.93340 -24.62638 -23.69724 -22.77729 -21.90343 -21.66045 -20.71368 -19.38447 -18.36181 -17.48550 -17.09290 -16.93865 -16.85345 -16.37083 -15.57602 -15.53719 -15.22678 -14.93079 -14.75723 -14.35393 -14.29174 -14.18486 -13.73667 -13.62766 -13.16940 -12.95439 -12.64474 -12.43997 -12.31695 -11.98729 -11.88429 -11.53388 -11.44807 -11.42661 -11.10205 -10.91203 -10.56518 -10.35526 -10.17841 -9.94054 -9.93024 -9.75521 -9.71868 -9.55255 -9.24326 -9.10406 -8.94845 -7.06212 -5.86923 -3.15919 -0.05365 0.37738 1.40611 1.72062 2.10589 2.48679 2.92145 3.30938 3.36963 3.43461 3.45272 3.81411 3.97987 4.13645 4.40165 4.41564 4.42949 4.50478 4.60691 4.71736 4.76095 4.97464 5.00203 5.03726 5.15866 5.24864 5.39399 5.51114 5.54048 5.59059 5.62744 5.64171 5.70551 5.80190 5.87764 5.91085 6.03119 6.15350 6.26484 6.30374 6.31186 6.52004 6.67072 6.82469 6.97332 7.31054 7.64202 7.98201 7.99350 8.32307 9.43261 10.00381 10.34600 11.35522 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.001756 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.036048 B =15943.765200 C =16893.922683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.120 4.120 13 C 0.130 3.870 14 N -0.715 5.715 15 C 0.554 3.446 16 O -0.532 6.532 17 C -0.109 4.109 18 C -0.075 4.075 19 C -0.101 4.101 20 C -0.095 4.095 21 C 0.110 3.890 22 N -0.242 5.242 23 C -0.050 4.050 24 C -0.044 4.044 25 N -0.263 5.263 26 N -0.073 5.073 27 C -0.044 4.044 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.402 0.598 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -17.750 -17.834 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.007 3.993 14 N -0.366 5.366 15 C 0.340 3.660 16 O -0.410 6.410 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.116 4.116 21 C 0.019 3.981 22 N -0.029 5.029 23 C -0.198 4.198 24 C -0.199 4.199 25 N -0.129 5.129 26 N -0.052 5.052 27 C -0.064 4.064 28 C -0.210 4.210 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.213 0.787 43 H 0.174 0.826 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.193 -19.035 -16.064 25.443 hybrid contribution -0.514 1.920 -1.453 2.462 sum -5.706 -17.115 -17.517 25.146 Atomic orbital electron populations 1.69669 1.05139 1.25692 1.57546 1.24761 0.95545 0.97802 1.02759 0.86101 0.78841 0.83936 0.77204 1.20477 1.21861 1.21803 1.19342 0.91178 0.83956 1.42859 0.90914 1.42175 1.05669 0.99442 1.87121 1.21096 0.95166 0.85587 0.92694 1.23442 1.00523 0.99728 0.95021 1.22724 0.99638 0.92730 0.98816 1.21564 0.98230 0.97316 0.82178 1.45970 1.62960 1.07622 1.20040 1.18063 0.78949 0.83806 0.85210 1.90811 1.50860 1.37332 1.61998 1.19916 1.02457 0.93198 0.95720 1.21628 0.94983 0.98546 0.94295 1.21026 0.98659 0.96896 0.95409 1.21091 0.99437 0.90823 1.00262 1.17492 1.04876 0.80674 0.95017 1.44773 1.41444 1.06214 1.10493 1.23860 1.07396 0.99259 0.89287 1.23702 1.05480 0.91914 0.98839 1.75168 1.13983 1.22145 1.01588 1.78475 1.19262 0.86243 1.21211 1.21048 0.94240 0.98873 0.92269 1.23922 0.95649 0.99634 1.01778 0.93485 0.78130 0.91893 0.91244 0.90382 0.88844 0.91455 0.91208 0.76223 0.84072 0.83489 0.84230 0.78804 0.78691 0.82583 0.91350 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.04 13.06 55.49 0.72 -26.31 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.67 5.31 -52.55 -0.28 -16.94 16 10 C 0.17 3.09 4.57 -67.02 -0.31 2.79 16 11 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 12 C -0.12 -1.65 3.62 -89.81 -0.33 -1.98 16 13 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 14 N -0.71 -7.91 5.51 -61.25 -0.34 -8.24 16 15 C 0.55 6.92 7.77 -12.32 -0.10 6.82 16 16 O -0.53 -8.64 16.34 5.32 0.09 -8.56 16 17 C -0.11 -1.07 5.87 -104.99 -0.62 -1.69 16 18 C -0.08 -0.51 9.54 -39.17 -0.37 -0.89 16 19 C -0.10 -0.51 10.02 -39.67 -0.40 -0.91 16 20 C -0.10 -0.52 9.45 -39.33 -0.37 -0.90 16 21 C 0.11 0.96 6.67 -83.62 -0.56 0.40 16 22 N -0.24 -2.32 3.56 -10.50 -0.04 -2.36 16 23 C -0.05 -0.32 10.91 -16.67 -0.18 -0.50 16 24 C -0.04 -0.33 12.05 -17.73 -0.21 -0.54 16 25 N -0.26 -3.10 12.39 30.24 0.37 -2.73 16 26 N -0.07 -0.92 12.42 60.35 0.75 -0.17 16 27 C -0.04 -0.46 9.16 -39.00 -0.36 -0.81 16 28 C -0.17 -2.60 7.44 -25.83 -0.19 -2.80 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.38 9.60 7.90 -40.82 -0.32 9.28 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 37 H 0.40 3.58 6.50 -40.82 -0.27 3.32 16 38 H 0.14 0.72 6.40 -52.48 -0.34 0.38 16 39 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.14 0.33 6.77 -52.48 -0.36 -0.03 16 41 H 0.20 0.35 7.12 -52.49 -0.37 -0.02 16 42 H 0.20 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.16 1.93 7.29 -52.49 -0.38 1.54 16 44 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -34.69 383.69 -8.19 -42.88 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.78 Total: 8.93 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -4.45 Total: -8.89 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 1.20 Total: -56.76 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.69 -8.19 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091392440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.179 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds