Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48499 * 109.46872 * 269.99448 * 3 2 1 5 5 H 1.48496 * 109.47413 * 29.99671 * 3 2 1 6 6 H 1.48502 * 109.47208 * 149.99998 * 3 2 1 7 7 C 1.38813 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99629 * 359.72841 * 7 2 1 10 10 C 1.46499 * 119.99714 * 180.27567 * 9 7 2 11 11 H 1.08998 * 109.32627 * 34.64513 * 10 9 7 12 12 C 1.53033 * 109.32134 * 154.10758 * 10 9 7 13 13 C 1.53972 * 108.82608 * 175.67379 * 12 10 9 14 14 H 1.09006 * 113.67036 * 168.56115 * 13 12 10 15 15 C 1.55427 * 106.41916 * 293.82521 * 13 12 10 16 16 C 1.55171 * 100.35118 * 73.37231 * 15 13 12 17 17 H 1.08993 * 112.48380 * 163.34684 * 16 15 13 18 18 C 1.52984 * 109.32573 * 274.99390 * 10 9 7 19 19 N 1.47797 * 104.25031 * 40.55160 * 16 15 13 20 20 C 1.34779 * 125.85238 * 153.50241 * 19 16 15 21 21 O 1.21569 * 119.99893 * 354.39899 * 20 19 16 22 22 C 1.47692 * 119.99757 * 174.39297 * 20 19 16 23 23 C 1.39980 * 120.38159 * 186.63035 * 22 20 19 24 24 N 1.31381 * 121.15905 * 179.73282 * 23 22 20 25 25 C 1.32542 * 121.79145 * 0.57415 * 24 23 22 26 26 N 1.37583 * 133.56729 * 179.67424 * 25 24 23 27 27 H 0.97001 * 126.24130 * 0.04350 * 26 25 24 28 28 C 1.36165 * 107.52524 * 180.02562 * 26 25 24 29 29 N 1.30061 * 110.11447 * 359.97438 * 28 26 25 30 30 C 1.35773 * 109.43155 * 359.97438 * 29 28 26 31 31 C 1.39491 * 133.74369 * 179.97438 * 30 29 28 32 32 C 1.47080 * 108.28851 * 333.53965 * 19 16 15 33 33 H 0.97000 * 119.99931 * 0.02562 * 1 2 3 34 34 H 0.96995 * 120.00008 * 0.26867 * 9 7 2 35 35 H 1.08999 * 109.58011 * 295.48087 * 12 10 9 36 36 H 1.09004 * 109.57862 * 55.87864 * 12 10 9 37 37 H 1.09002 * 111.23248 * 315.60102 * 15 13 12 38 38 H 1.08997 * 111.23789 * 191.15127 * 15 13 12 39 39 H 1.09000 * 109.53693 * 304.53564 * 18 10 9 40 40 H 1.09001 * 109.53105 * 64.68082 * 18 10 9 41 41 H 1.08008 * 119.41838 * 0.02562 * 23 22 20 42 42 H 1.08005 * 124.94577 * 180.02562 * 28 26 25 43 43 H 1.07995 * 120.97276 * 0.06880 * 31 30 29 44 44 H 1.09007 * 109.97306 * 241.73742 * 32 19 16 45 45 H 1.08997 * 110.00690 * 120.47748 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0067 10 6 2.0582 -3.6567 0.0134 11 1 2.9713 -3.5429 0.5976 12 6 1.1862 -4.7416 0.6496 13 6 1.9219 -6.0907 0.5526 14 1 1.4681 -6.8806 1.1512 15 6 2.0032 -6.4390 -0.9600 16 6 3.0856 -5.4273 -1.4213 17 1 3.5104 -5.6849 -2.3914 18 6 2.4202 -4.0398 -1.4228 19 7 4.0839 -5.4405 -0.3315 20 6 5.3934 -5.1473 -0.4570 21 8 5.8667 -4.9377 -1.5570 22 6 6.2534 -5.0806 0.7419 23 6 7.5790 -4.6429 0.6388 24 7 8.3558 -4.5727 1.6960 25 6 7.9281 -4.9212 2.9012 26 7 8.5167 -4.9507 4.1444 27 1 9.4287 -4.6945 4.3534 28 6 7.5857 -5.4048 5.0282 29 7 6.4681 -5.6546 4.4116 30 6 6.6092 -5.3761 3.0903 31 6 5.7544 -5.4569 1.9909 32 6 3.4035 -5.8293 0.9131 33 1 -0.4850 0.8400 -0.0004 34 1 0.3556 -2.3881 0.0067 35 1 1.0063 -4.4981 1.6967 36 1 0.2363 -4.8047 0.1188 37 1 1.0520 -6.2544 -1.4592 38 1 2.3332 -7.4667 -1.1113 39 1 1.5162 -4.0698 -2.0310 40 1 3.1113 -3.3035 -1.8332 41 1 7.9686 -4.3534 -0.3260 42 1 7.7509 -5.5374 6.0873 43 1 4.7372 -5.8022 2.1021 44 1 3.4724 -5.0225 1.6428 45 1 3.8541 -6.7359 1.3170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094930469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 100.220714 kcal Electronic energy + Delta-G solvation = -30238.420801 eV Core-core repulsion = 26258.147104 eV Total energy + Delta-G solvation = -3980.273697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62157 -41.05099 -38.94780 -37.60151 -34.94655 -34.09462 -32.82353 -31.73701 -31.25122 -30.19089 -29.96635 -27.89333 -26.23201 -24.35459 -24.09185 -23.65751 -22.29643 -21.54841 -21.08568 -19.94528 -19.11887 -18.65941 -17.77010 -17.12731 -16.97687 -16.14438 -15.98685 -15.71149 -15.50419 -14.74809 -14.42038 -14.32753 -14.27184 -13.86597 -13.54909 -13.12848 -12.94409 -12.78460 -12.68265 -12.61635 -12.27799 -12.21436 -11.77414 -11.67392 -11.43721 -11.33973 -11.00780 -10.89101 -10.74676 -10.44088 -10.17104 -10.10911 -10.00216 -9.66483 -9.56158 -9.34480 -9.13342 -8.89213 -8.83459 -8.46636 -6.94070 -5.75243 -3.03534 0.49870 0.67520 2.23514 2.47386 2.85587 2.99178 3.45257 3.50882 3.52141 3.72329 3.74035 4.12789 4.40487 4.43074 4.48457 4.60174 4.67154 4.78532 4.87170 4.96097 5.09682 5.19470 5.34429 5.42923 5.46625 5.49650 5.54710 5.69871 5.73463 5.77388 5.83989 5.88715 5.93293 5.98866 6.10696 6.20734 6.26645 6.32059 6.47790 6.54531 6.67507 6.75474 6.98343 7.08507 7.35513 7.53277 7.63974 7.73314 8.20899 8.43763 9.55193 10.12153 10.46907 11.47384 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.003992 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.336870 B = 7012.892961 C = 8312.962049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.178 3.822 11 H 0.047 0.953 12 C -0.123 4.123 13 C -0.098 4.098 14 H 0.101 0.899 15 C -0.127 4.127 16 C 0.135 3.865 17 H 0.096 0.904 18 C -0.145 4.145 19 N -0.598 5.598 20 C 0.586 3.414 21 O -0.536 6.536 22 C -0.189 4.189 23 C 0.199 3.801 24 N -0.488 5.488 25 C 0.253 3.747 26 N -0.590 5.590 27 H 0.429 0.571 28 C 0.273 3.727 29 N -0.479 5.479 30 C -0.008 4.008 31 C -0.013 4.013 32 C 0.089 3.911 33 H 0.254 0.746 34 H 0.383 0.617 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.180 0.820 42 H 0.227 0.773 43 H 0.179 0.821 44 H 0.085 0.915 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 -17.648 8.087 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.085 0.915 9 N -0.364 5.364 10 C 0.068 3.932 11 H 0.065 0.935 12 C -0.161 4.161 13 C -0.118 4.118 14 H 0.119 0.881 15 C -0.165 4.165 16 C 0.032 3.968 17 H 0.114 0.886 18 C -0.186 4.186 19 N -0.331 5.331 20 C 0.375 3.625 21 O -0.414 6.414 22 C -0.197 4.197 23 C 0.030 3.970 24 N -0.201 5.201 25 C 0.017 3.983 26 N -0.204 5.204 27 H 0.269 0.731 28 C -0.015 4.015 29 N -0.198 5.198 30 C -0.128 4.128 31 C -0.040 4.040 32 C -0.033 4.033 33 H 0.064 0.936 34 H 0.217 0.783 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.197 0.803 42 H 0.243 0.757 43 H 0.195 0.805 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.774 -17.369 7.857 22.947 hybrid contribution 0.619 1.301 0.040 1.441 sum 13.393 -16.067 7.897 22.359 Atomic orbital electron populations 1.69652 1.05036 1.25575 1.57924 1.24694 0.95465 0.97545 1.03064 0.86250 0.78695 0.84056 0.77604 1.21663 1.21766 1.20864 1.19212 0.90882 0.84152 1.42410 0.91464 1.42417 1.05694 0.99745 1.88520 1.20255 0.94312 0.86080 0.92542 0.93472 1.22145 0.99182 0.93068 1.01689 1.22681 0.93761 0.98684 0.96642 0.88072 1.23060 0.99368 0.98364 0.95730 1.22388 0.86853 0.96889 0.90655 0.88588 1.22841 1.00188 0.94174 1.01374 1.48416 1.06985 1.67021 1.10704 1.17385 0.80301 0.76963 0.87880 1.90781 1.73142 1.50706 1.26807 1.20686 0.96945 1.08112 0.93950 1.22773 0.88045 0.90296 0.95870 1.66532 1.38099 1.19053 0.96393 1.19251 0.91603 1.00114 0.87336 1.42868 1.15651 1.56418 1.05491 0.73087 1.25521 0.83275 0.95450 0.97282 1.70489 1.23563 1.22050 1.03681 1.19595 0.93744 1.06519 0.92902 1.22417 1.01141 0.91802 0.88595 1.22729 0.93391 0.99592 0.87635 0.93569 0.78318 0.91476 0.91418 0.89327 0.91242 0.91342 0.91779 0.80265 0.75727 0.80465 0.89690 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 22.97 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.62 9.92 -15.06 -0.15 -6.77 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.91 5.11 -53.42 -0.27 -18.18 16 10 C 0.18 3.41 2.39 -67.92 -0.16 3.25 16 11 H 0.05 0.97 5.88 -51.93 -0.31 0.67 16 12 C -0.12 -1.82 4.96 -26.21 -0.13 -1.95 16 13 C -0.10 -1.09 4.33 -87.93 -0.38 -1.47 16 14 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 15 C -0.13 -1.40 6.18 -24.29 -0.15 -1.55 16 16 C 0.14 1.94 4.00 -65.61 -0.26 1.67 16 17 H 0.10 1.39 8.00 -51.93 -0.42 0.98 16 18 C -0.14 -2.59 5.29 -26.28 -0.14 -2.73 16 19 N -0.60 -8.59 2.36 -164.02 -0.39 -8.98 16 20 C 0.59 9.35 7.82 -12.40 -0.10 9.26 16 21 O -0.54 -9.99 16.62 5.31 0.09 -9.90 16 22 C -0.19 -2.70 5.89 -104.85 -0.62 -3.31 16 23 C 0.20 2.75 10.74 -17.09 -0.18 2.57 16 24 N -0.49 -6.66 10.36 -11.96 -0.12 -6.78 16 25 C 0.25 3.18 8.45 -155.63 -1.31 1.87 16 26 N -0.59 -4.77 6.20 -13.22 -0.08 -4.85 16 27 H 0.43 2.00 8.96 -40.82 -0.37 1.63 16 28 C 0.27 2.02 12.97 -89.70 -1.16 0.86 16 29 N -0.48 -5.62 11.29 -12.02 -0.14 -5.75 16 30 C -0.01 -0.11 7.23 -84.69 -0.61 -0.72 16 31 C -0.01 -0.17 8.76 -38.58 -0.34 -0.51 16 32 C 0.09 1.05 3.59 -2.83 -0.01 1.04 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 37 H 0.09 0.95 7.75 -51.93 -0.40 0.55 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.18 2.27 7.65 -52.48 -0.40 1.87 16 42 H 0.23 0.42 8.06 -52.48 -0.42 -0.01 16 43 H 0.18 2.07 2.90 -53.87 -0.16 1.91 16 44 H 0.09 1.11 5.38 -51.93 -0.28 0.83 16 45 H 0.07 0.69 6.76 -51.93 -0.35 0.34 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -36.44 357.69 -11.11 -47.55 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.48 Total: 10.03 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -5.81 Total: 1.07 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -0.28 Total: -72.07 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.44 -11.11 -47.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094930469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.768 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds