Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48503 * 109.46658 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47171 * 299.99393 * 3 2 1 6 6 H 1.48492 * 109.47208 * 60.00200 * 3 2 1 7 7 C 1.38816 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99941 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99531 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75362 * 94.99594 * 11 10 9 13 13 N 1.35315 * 106.17699 * 179.97438 * 12 11 10 14 14 C 1.46503 * 125.86874 * 179.97438 * 13 12 11 15 15 H 1.08992 * 110.63960 * 151.85888 * 14 13 12 16 16 C 1.55151 * 110.72248 * 275.00475 * 14 13 12 17 17 C 1.54909 * 101.58257 * 153.86425 * 16 14 13 18 18 N 1.47426 * 104.83181 * 322.98977 * 17 16 14 19 19 C 1.34780 * 125.64922 * 204.08551 * 18 17 16 20 20 O 1.21552 * 119.99817 * 184.00234 * 19 18 17 21 21 C 1.47841 * 119.99930 * 3.73500 * 19 18 17 22 22 C 1.39576 * 120.14127 * 332.80977 * 21 19 18 23 23 C 1.37962 * 119.84834 * 179.76989 * 22 21 19 24 24 C 1.38356 * 120.14722 * 0.48649 * 23 22 21 25 25 C 1.38363 * 120.29492 * 359.76374 * 24 23 22 26 26 C 1.37963 * 120.13863 * 0.02562 * 25 24 23 27 27 C 1.47026 * 108.70196 * 24.35881 * 18 17 16 28 28 N 1.28716 * 108.26236 * 0.26644 * 13 12 11 29 29 N 1.28634 * 110.17705 * 359.55742 * 28 13 12 30 30 H 0.97002 * 119.99912 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00889 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47662 * 60.00081 * 10 9 7 33 33 H 1.09004 * 109.47007 * 299.99399 * 10 9 7 34 34 H 1.08003 * 126.91133 * 0.02562 * 12 11 10 35 35 H 1.09008 * 111.00505 * 35.79535 * 16 14 13 36 36 H 1.08993 * 111.00519 * 271.94170 * 16 14 13 37 37 H 1.08997 * 110.36834 * 204.15222 * 17 16 14 38 38 H 1.09000 * 110.36927 * 81.82915 * 17 16 14 39 39 H 1.07998 * 120.07562 * 359.97438 * 22 21 19 40 40 H 1.07997 * 119.92671 * 180.23226 * 23 22 21 41 41 H 1.08004 * 119.85439 * 179.74687 * 24 23 22 42 42 H 1.07990 * 119.92834 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.07132 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.88364 * 118.13322 * 27 18 17 45 45 H 1.09006 * 109.87891 * 239.29572 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0785 -4.8022 0.0008 12 6 0.6252 -5.4794 -1.0799 13 7 -0.2296 -6.4156 -0.6069 14 6 -0.9688 -7.3893 -1.4143 15 1 -1.1714 -8.2917 -0.8376 16 6 -2.2879 -6.7713 -1.9482 17 6 -2.5286 -7.6101 -3.2281 18 7 -1.1844 -7.8351 -3.7902 19 6 -0.9074 -8.0990 -5.0826 20 8 0.2345 -8.3398 -5.4225 21 6 -1.9934 -8.1014 -6.0857 22 6 -3.3020 -8.3982 -5.7013 23 6 -4.3116 -8.3940 -6.6415 24 6 -4.0276 -8.1064 -7.9647 25 6 -2.7317 -7.8164 -8.3534 26 6 -1.7136 -7.8129 -7.4223 27 6 -0.1966 -7.7306 -2.7062 28 7 -0.2865 -6.2995 0.6738 29 7 0.4865 -5.3500 1.0680 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 2.6838 -3.7143 0.8921 33 1 2.6852 -3.7150 -0.8879 34 1 0.8927 -5.3076 -2.1121 35 1 -2.1551 -5.7170 -2.1914 36 1 -3.0999 -6.9066 -1.2340 37 1 -3.1470 -7.0559 -3.9342 38 1 -2.9984 -8.5608 -2.9759 39 1 -3.5242 -8.6274 -4.6696 40 1 -5.3251 -8.6198 -6.3448 41 1 -4.8209 -8.1084 -8.6976 42 1 -2.5167 -7.5931 -9.3878 43 1 -0.7024 -7.5868 -7.7270 44 1 0.3262 -8.6797 -2.5883 45 1 0.5167 -6.9373 -2.9301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098598589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 132.214314 kcal Electronic energy + Delta-G solvation = -28365.634386 eV Core-core repulsion = 24386.748036 eV Total energy + Delta-G solvation = -3978.886350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.08901 -40.97504 -39.07754 -37.91971 -35.10802 -34.15734 -32.14612 -31.72101 -31.45965 -31.04154 -29.91169 -29.05422 -26.04325 -25.35553 -23.58161 -23.18274 -22.79616 -22.62183 -21.03761 -20.61308 -20.25670 -18.13175 -17.68606 -17.09077 -16.91179 -16.45994 -15.99310 -15.92980 -15.27525 -14.94525 -14.75955 -14.59697 -14.34023 -14.11582 -14.02740 -13.70998 -13.42149 -13.24830 -13.12229 -12.87878 -12.74974 -12.60313 -12.26086 -12.02252 -11.90848 -11.58429 -11.46178 -11.26209 -10.88842 -10.81881 -10.51724 -10.38486 -10.05374 -9.89905 -9.72646 -9.49274 -9.45791 -9.20980 -8.89542 -8.85726 -6.90848 -5.73325 -3.02730 0.41818 0.87031 1.74901 1.99788 2.34129 2.59419 2.88110 3.34168 3.46369 3.51975 3.54305 3.56042 3.79152 4.08362 4.24836 4.31909 4.40653 4.44351 4.55328 4.61307 4.63967 4.75572 4.88134 4.90481 4.97378 5.08206 5.09788 5.21859 5.26937 5.30917 5.45761 5.48287 5.49222 5.59720 5.63560 5.80053 5.82356 5.89513 5.96498 6.17887 6.38087 6.38580 6.65699 6.71724 6.78053 6.86541 7.63263 7.72928 8.43932 8.79625 9.55927 10.11309 10.47422 11.49564 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002358 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.725826 B =11873.734701 C =13103.382812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.232 3.768 11 C 0.000 4.000 12 C -0.045 4.045 13 N -0.294 5.294 14 C 0.137 3.863 15 H 0.130 0.870 16 C -0.145 4.145 17 C 0.093 3.907 18 N -0.613 5.613 19 C 0.578 3.422 20 O -0.527 6.527 21 C -0.130 4.130 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.095 4.095 25 C -0.126 4.126 26 C -0.061 4.061 27 C 0.100 3.900 28 N -0.092 5.092 29 N -0.251 5.251 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.187 0.813 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 -22.849 -15.551 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.370 5.370 10 C 0.103 3.897 11 C -0.138 4.138 12 C -0.195 4.195 13 N -0.088 5.088 14 C 0.034 3.966 15 H 0.148 0.852 16 C -0.184 4.184 17 C -0.030 4.030 18 N -0.348 5.348 19 C 0.368 3.632 20 O -0.404 6.404 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.113 4.113 25 C -0.144 4.144 26 C -0.079 4.079 27 C -0.024 4.024 28 N -0.070 5.070 29 N -0.118 5.118 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.204 0.796 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.109 0.891 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.181 -23.439 -14.499 29.742 hybrid contribution 0.358 1.297 -1.041 1.702 sum -10.823 -22.141 -15.540 29.135 Atomic orbital electron populations 1.69691 1.05171 1.25500 1.57717 1.24759 0.95536 0.97727 1.02970 0.86084 0.78807 0.83979 0.77131 1.20448 1.21924 1.21854 1.19281 0.91145 0.83790 1.42688 0.90807 1.42304 1.05962 0.99258 1.89523 1.18967 0.90054 0.81360 0.99366 1.22459 1.02477 1.00565 0.88273 1.23303 0.99104 0.94976 1.02122 1.47091 1.30649 1.24399 1.06662 1.22467 0.91483 0.91685 0.90990 0.85211 1.23348 0.96642 1.01466 0.96918 1.22816 0.85139 0.99958 0.95083 1.48188 1.08320 1.71377 1.06906 1.18019 0.88446 0.76462 0.80267 1.90827 1.21924 1.48360 1.79256 1.19767 0.93301 1.06080 0.94131 1.21844 0.91675 0.97706 1.00716 1.21159 0.99428 1.00732 0.93206 1.21429 0.96869 0.96711 0.96324 1.21194 0.92756 1.00530 0.99914 1.21278 1.00173 0.95346 0.91143 1.22202 0.91713 1.04119 0.84381 1.78277 1.19550 1.17223 0.91937 1.75108 1.06314 1.04205 1.26185 0.93595 0.78135 0.94210 0.94417 0.79591 0.88690 0.87717 0.88439 0.89811 0.84320 0.85231 0.85467 0.85128 0.84755 0.89147 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.13 5.59 -61.08 -0.34 -19.47 16 10 C 0.23 4.93 6.82 -5.19 -0.04 4.90 16 11 C 0.00 0.00 6.62 -82.77 -0.55 -0.55 16 12 C -0.05 -0.69 10.48 -17.04 -0.18 -0.87 16 13 N -0.29 -3.98 3.38 -52.98 -0.18 -4.16 16 14 C 0.14 1.19 4.00 -66.09 -0.26 0.93 16 15 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.14 -1.03 6.77 -24.59 -0.17 -1.20 16 17 C 0.09 0.50 5.02 -2.53 -0.01 0.49 16 18 N -0.61 -5.23 3.33 -171.62 -0.57 -5.80 16 19 C 0.58 6.25 7.64 -12.33 -0.09 6.15 16 20 O -0.53 -7.61 16.99 5.32 0.09 -7.52 16 21 C -0.13 -1.14 5.70 -104.97 -0.60 -1.74 16 22 C -0.10 -0.63 7.94 -39.18 -0.31 -0.95 16 23 C -0.13 -0.68 10.03 -39.64 -0.40 -1.07 16 24 C -0.10 -0.52 10.04 -39.49 -0.40 -0.91 16 25 C -0.13 -0.81 10.03 -39.64 -0.40 -1.21 16 26 C -0.06 -0.51 9.59 -39.18 -0.38 -0.89 16 27 C 0.10 0.88 6.48 -3.06 -0.02 0.86 16 28 N -0.09 -1.57 13.17 60.35 0.79 -0.77 16 29 N -0.25 -5.06 12.41 33.29 0.41 -4.65 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.39 10.91 7.66 -40.82 -0.31 10.60 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.19 2.38 6.84 -52.48 -0.36 2.02 16 35 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.48 6.15 -51.93 -0.32 0.16 16 38 H 0.08 0.25 7.29 -51.93 -0.38 -0.13 16 39 H 0.14 0.57 4.56 -52.49 -0.24 0.33 16 40 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 1.16 7.88 -52.49 -0.41 0.75 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.91 5.83 -51.93 -0.30 0.60 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -37.14 376.82 -8.13 -45.27 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.68 Total: 5.32 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -4.04 Total: -3.48 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.84 Total: -62.92 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.14 -8.13 -45.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098598589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.489 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds