Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48493 * 109.47324 * 270.00195 * 3 2 1 5 5 H 1.48500 * 109.47051 * 30.00144 * 3 2 1 6 6 H 1.48503 * 109.47252 * 149.99619 * 3 2 1 7 7 C 1.38812 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00141 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99904 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47121 * 180.02562 * 10 9 7 12 12 C 1.35346 * 126.75205 * 95.24614 * 11 10 9 13 13 N 1.35316 * 106.17769 * 180.12379 * 12 11 10 14 14 C 1.46499 * 125.86730 * 179.90678 * 13 12 11 15 15 H 1.09006 * 110.91323 * 202.27422 * 14 13 12 16 16 C 1.55445 * 111.11810 * 78.27650 * 14 13 12 17 17 C 1.54322 * 102.96617 * 206.46432 * 16 14 13 18 18 N 1.47016 * 107.27408 * 22.19241 * 17 16 14 19 19 C 1.34783 * 125.64723 * 181.08214 * 18 17 16 20 20 O 1.21553 * 119.99574 * 174.34732 * 19 18 17 21 21 C 1.47844 * 119.99998 * 354.34664 * 19 18 17 22 22 C 1.39576 * 120.14345 * 7.00115 * 21 19 18 23 23 C 1.37965 * 119.84921 * 179.79228 * 22 21 19 24 24 C 1.38360 * 120.14505 * 0.48526 * 23 22 21 25 25 C 1.38362 * 120.29131 * 359.74397 * 24 23 22 26 26 C 1.37958 * 120.14786 * 0.02562 * 25 24 23 27 27 C 1.47425 * 108.70545 * 1.05779 * 18 17 16 28 28 N 1.28710 * 108.26040 * 359.64810 * 13 12 11 29 29 N 1.28634 * 110.18294 * 0.21944 * 28 13 12 30 30 H 0.97002 * 119.99820 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99848 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46686 * 60.00300 * 10 9 7 33 33 H 1.08993 * 109.47381 * 300.00393 * 10 9 7 34 34 H 1.08011 * 126.91143 * 0.02562 * 12 11 10 35 35 H 1.08995 * 110.70932 * 88.09194 * 16 14 13 36 36 H 1.08998 * 110.85923 * 324.90669 * 16 14 13 37 37 H 1.09003 * 109.88284 * 262.77409 * 17 16 14 38 38 H 1.08997 * 110.01384 * 141.68505 * 17 16 14 39 39 H 1.07992 * 120.07829 * 0.02562 * 22 21 19 40 40 H 1.08000 * 119.92499 * 180.22861 * 23 22 21 41 41 H 1.07998 * 119.85646 * 179.72332 * 24 23 22 42 42 H 1.08000 * 119.92590 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.07213 * 179.97438 * 26 25 24 44 44 H 1.09002 * 110.36303 * 94.70935 * 27 18 17 45 45 H 1.08997 * 110.36969 * 216.92520 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.5937 -2.1956 0.0009 12 6 6.4081 -2.1441 1.0807 13 7 7.6451 -1.8676 0.6072 14 6 8.8584 -1.7137 1.4138 15 1 9.6083 -1.1290 0.8809 16 6 9.4278 -3.0963 1.8384 17 6 10.1869 -2.7726 3.1424 18 7 9.6201 -1.5270 3.6797 19 6 10.0265 -0.8985 4.8006 20 8 9.5543 0.1818 5.0968 21 6 11.0465 -1.5228 5.6698 22 6 11.6964 -2.6887 5.2618 23 6 12.6504 -3.2639 6.0758 24 6 12.9560 -2.6931 7.2985 25 6 12.3120 -1.5401 7.7110 26 6 11.3595 -0.9522 6.9045 27 6 8.5340 -1.0790 2.7892 28 7 7.5737 -1.7684 -0.6741 29 7 6.3637 -1.9588 -1.0671 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.8484 -3.0434 -0.8881 33 1 3.8491 -3.0415 0.8918 34 1 6.1267 -2.2922 2.1130 35 1 10.1099 -3.4815 1.0805 36 1 8.6225 -3.8063 2.0270 37 1 11.2472 -2.6359 2.9299 38 1 10.0543 -3.5807 3.8617 39 1 11.4558 -3.1375 4.3094 40 1 13.1566 -4.1640 5.7596 41 1 13.7004 -3.1498 7.9340 42 1 12.5555 -1.0993 8.6664 43 1 10.8573 -0.0524 7.2279 44 1 7.5716 -1.4373 3.1548 45 1 8.5294 0.0083 2.7137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098598594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 149.103859 kcal Electronic energy + Delta-G solvation = -28306.861207 eV Core-core repulsion = 24328.707242 eV Total energy + Delta-G solvation = -3978.153965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.23548 -41.13805 -39.12920 -38.03596 -35.33124 -34.34917 -32.24238 -31.81827 -31.54489 -31.17547 -30.35071 -29.17425 -26.38129 -25.56098 -23.84044 -23.21168 -22.61734 -22.43811 -21.13843 -20.77732 -20.48414 -18.25274 -17.97116 -17.40439 -17.01912 -16.48121 -16.07548 -15.92960 -15.24877 -15.04643 -14.89824 -14.57494 -14.50799 -14.32532 -14.18403 -13.99904 -13.57273 -13.47417 -13.04147 -12.98292 -12.80546 -12.68900 -12.32667 -12.17394 -11.97891 -11.70039 -11.54769 -11.31612 -11.10553 -10.86094 -10.63074 -10.46249 -10.15124 -9.98202 -9.57913 -9.57550 -9.55642 -9.31268 -9.06323 -8.88437 -7.22267 -5.74284 -3.10139 0.30541 0.80721 1.58854 1.84808 2.31384 2.49729 2.71353 3.31225 3.42645 3.47374 3.49581 3.50329 3.65419 3.99609 4.04744 4.18149 4.33240 4.36802 4.41119 4.53899 4.60751 4.63445 4.70942 4.82477 4.91159 4.97136 5.03168 5.10092 5.14297 5.19071 5.24890 5.35190 5.41336 5.49277 5.55182 5.67592 5.73446 5.75877 5.81995 5.89557 6.21843 6.31912 6.53682 6.56488 6.65590 6.78467 7.56379 7.99789 8.44334 8.64098 9.22223 9.94897 10.14577 11.43709 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.002248 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.510082 B =12454.920205 C =13453.528070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.094 0.906 9 N -0.749 5.749 10 C 0.237 3.763 11 C -0.007 4.007 12 C -0.044 4.044 13 N -0.292 5.292 14 C 0.135 3.865 15 H 0.131 0.869 16 C -0.143 4.143 17 C 0.092 3.908 18 N -0.614 5.614 19 C 0.578 3.422 20 O -0.525 6.525 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.094 4.094 25 C -0.128 4.128 26 C -0.059 4.059 27 C 0.099 3.901 28 N -0.090 5.090 29 N -0.251 5.251 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.384 -10.118 14.884 37.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.145 4.145 12 C -0.194 4.194 13 N -0.086 5.086 14 C 0.031 3.969 15 H 0.149 0.851 16 C -0.182 4.182 17 C -0.030 4.030 18 N -0.349 5.349 19 C 0.368 3.632 20 O -0.401 6.401 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.112 4.112 25 C -0.146 4.146 26 C -0.078 4.078 27 C -0.025 4.025 28 N -0.068 5.068 29 N -0.119 5.119 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.207 0.793 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.176 0.824 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.106 0.894 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 32.690 -9.300 13.808 36.685 hybrid contribution 0.145 1.049 1.122 1.543 sum 32.834 -8.251 14.930 37.001 Atomic orbital electron populations 1.69699 1.05020 1.25847 1.57446 1.24634 0.95208 0.97152 1.01891 0.86557 0.79078 0.85013 0.77928 1.20950 1.21697 1.20558 1.19028 0.80178 0.94892 1.43244 0.88870 1.42651 1.03937 1.01762 1.91222 1.18926 0.80104 0.89941 1.00170 1.22538 0.99022 1.04522 0.88369 1.23376 0.84383 1.09464 1.02216 1.47033 1.08032 1.46912 1.06617 1.22644 0.84649 0.98737 0.90908 0.85078 1.23255 1.01733 0.96144 0.97079 1.22633 0.98220 0.87273 0.94919 1.48105 1.36250 1.25769 1.24767 1.18031 0.81655 0.84168 0.79324 1.90835 1.57208 1.20293 1.71804 1.19775 0.99603 0.97731 0.96394 1.22721 0.95325 0.94510 1.01630 1.21195 0.98206 1.00538 0.94721 1.21460 0.98418 0.95232 0.96136 1.21201 0.96816 0.96361 1.00232 1.21328 0.95405 0.98947 0.92077 1.22495 0.91384 1.01913 0.86668 1.78311 1.16472 1.20044 0.91987 1.75131 0.95748 1.14805 1.26172 0.93025 0.80472 0.93371 0.93607 0.79342 0.87921 0.88736 0.89272 0.89069 0.82394 0.85281 0.85513 0.85159 0.84584 0.89350 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 23.08 27.74 -169.99 -4.71 18.37 16 4 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 7 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.75 -18.49 5.40 -61.09 -0.33 -18.82 16 10 C 0.24 4.71 6.82 -5.20 -0.04 4.68 16 11 C -0.01 -0.12 6.62 -82.78 -0.55 -0.67 16 12 C -0.04 -0.60 10.59 -17.05 -0.18 -0.78 16 13 N -0.29 -3.61 3.38 -52.53 -0.18 -3.79 16 14 C 0.13 1.06 4.09 -65.62 -0.27 0.79 16 15 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.14 -0.67 6.66 -24.74 -0.16 -0.83 16 17 C 0.09 0.36 4.87 -3.07 -0.01 0.35 16 18 N -0.61 -4.75 3.33 -175.71 -0.58 -5.33 16 19 C 0.58 5.93 7.81 -12.33 -0.10 5.84 16 20 O -0.53 -7.49 16.60 5.32 0.09 -7.40 16 21 C -0.13 -1.07 5.87 -104.97 -0.62 -1.69 16 22 C -0.12 -0.67 8.61 -39.18 -0.34 -1.01 16 23 C -0.13 -0.58 10.03 -39.64 -0.40 -0.98 16 24 C -0.09 -0.44 10.04 -39.49 -0.40 -0.84 16 25 C -0.13 -0.73 10.03 -39.64 -0.40 -1.13 16 26 C -0.06 -0.46 9.59 -39.18 -0.38 -0.84 16 27 C 0.10 0.86 6.36 -2.53 -0.02 0.84 16 28 N -0.09 -1.44 13.16 60.35 0.79 -0.64 16 29 N -0.25 -4.73 12.41 33.29 0.41 -4.32 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.36 9.07 5.52 -40.82 -0.23 8.84 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.19 1.98 7.03 -52.48 -0.37 1.61 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.20 6.74 -51.93 -0.35 -0.15 16 38 H 0.09 0.24 6.73 -51.93 -0.35 -0.11 16 39 H 0.16 0.48 2.74 -57.77 -0.16 0.32 16 40 H 0.13 0.28 8.06 -52.49 -0.42 -0.15 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.14 1.12 7.67 -52.49 -0.40 0.72 16 44 H 0.09 0.78 6.39 -51.93 -0.33 0.44 16 45 H 0.10 1.02 7.98 -51.93 -0.41 0.60 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -38.08 372.75 -7.79 -45.87 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.57 Total: 2.61 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.10 Total: -3.31 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.89 Total: -61.76 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.08 -7.79 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098598594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.972 kcal (2) G-P(sol) polarization free energy of solvation -38.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds