Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48500 * 109.46952 * 269.99743 * 3 2 1 5 5 H 1.48500 * 109.46958 * 29.99600 * 3 2 1 6 6 H 1.48503 * 109.46861 * 149.99646 * 3 2 1 7 7 C 1.38821 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.47211 * 126.70127 * 0.02562 * 9 7 2 11 11 C 1.53783 * 106.37816 * 211.28551 * 10 9 7 12 12 H 1.08998 * 112.38712 * 219.31134 * 11 10 9 13 13 C 1.54318 * 109.79327 * 95.21762 * 11 10 9 14 14 C 1.55047 * 103.94001 * 221.69449 * 13 11 10 15 15 C 1.55050 * 102.11175 * 40.05316 * 14 13 11 16 16 C 1.54325 * 103.94011 * 319.94699 * 15 14 13 17 17 N 1.46499 * 111.69458 * 262.78845 * 16 15 14 18 18 C 1.34777 * 119.99665 * 299.26112 * 17 16 15 19 19 O 1.21543 * 120.00296 * 359.72071 * 18 17 16 20 20 C 1.47972 * 119.99741 * 179.72366 * 18 17 16 21 21 C 1.39733 * 119.42982 * 179.72541 * 20 18 17 22 22 C 1.36983 * 119.59994 * 179.71100 * 21 20 18 23 23 C 1.39899 * 118.36063 * 0.56246 * 22 21 20 24 24 N 1.35434 * 133.81367 * 179.74597 * 23 22 21 25 25 C 1.30214 * 109.57848 * 179.97438 * 24 23 22 26 26 N 1.35993 * 110.17849 * 359.97438 * 25 24 23 27 27 H 0.97004 * 126.29117 * 180.02562 * 26 25 24 28 28 C 1.37939 * 107.41590 * 0.02562 * 26 25 24 29 29 N 1.31882 * 133.82979 * 180.02562 * 28 26 25 30 30 C 1.48668 * 126.20080 * 180.66708 * 9 7 2 31 31 H 0.97002 * 119.99997 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.07671 * 92.06464 * 10 9 7 33 33 H 1.08995 * 110.08089 * 330.51152 * 10 9 7 34 34 H 1.08997 * 110.53793 * 103.07769 * 13 11 10 35 35 H 1.09006 * 110.65204 * 340.36915 * 13 11 10 36 36 H 1.09007 * 110.90334 * 281.84966 * 14 13 11 37 37 H 1.09004 * 110.93632 * 158.27519 * 14 13 11 38 38 H 1.09007 * 110.53958 * 201.33404 * 15 14 13 39 39 H 1.08999 * 110.53913 * 78.56224 * 15 14 13 40 40 H 0.97001 * 119.99790 * 118.97825 * 17 16 15 41 41 H 1.07997 * 120.19725 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.82223 * 180.24703 * 22 21 20 43 43 H 1.08004 * 124.91412 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.91521 * 29.98567 * 30 9 7 45 45 H 1.09006 * 109.94762 * 267.98170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1366 -2.5598 -0.0005 11 6 -0.4207 -3.8623 0.7660 12 1 -1.2232 -4.4442 0.3127 13 6 -0.7354 -3.5418 2.2424 14 6 0.0224 -4.6396 3.0327 15 6 1.3532 -4.7479 2.2445 16 6 0.9205 -4.6369 0.7673 17 7 0.7879 -5.9548 0.1414 18 6 1.8558 -6.7730 0.0607 19 8 2.9301 -6.4155 0.5027 20 6 1.7204 -8.1066 -0.5660 21 6 2.8367 -8.9430 -0.6485 22 6 2.7139 -10.1806 -1.2227 23 6 1.4633 -10.5607 -1.7215 24 7 0.9982 -11.6738 -2.3370 25 6 -0.2674 -11.5271 -2.6061 26 7 -0.6994 -10.3098 -2.1805 27 1 -1.6002 -9.9594 -2.2626 28 6 0.3787 -9.6651 -1.6108 29 7 0.5425 -8.4853 -1.0445 30 6 1.9253 -3.7484 0.0150 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5031 -2.6406 -1.0239 33 1 -0.6126 -1.7183 0.5026 34 1 -1.8074 -3.6081 2.4280 35 1 -0.3627 -2.5527 2.5089 36 1 -0.5226 -5.5834 3.0072 37 1 0.2034 -4.3249 4.0605 38 1 1.8314 -5.7094 2.4316 39 1 2.0222 -3.9292 2.5095 40 1 -0.0695 -6.2401 -0.2113 41 1 3.7893 -8.6176 -0.2574 42 1 3.5628 -10.8446 -1.2932 43 1 -0.8850 -12.2656 -3.0956 44 1 2.8838 -3.7455 0.5340 45 1 2.0530 -4.1094 -1.0055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098897406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 86.071007 kcal Electronic energy + Delta-G solvation = -29764.261552 eV Core-core repulsion = 25783.374278 eV Total energy + Delta-G solvation = -3980.887274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.68836 -40.34223 -38.88041 -37.49566 -34.39934 -34.13222 -33.34327 -31.59447 -31.33531 -30.33754 -29.29688 -27.68283 -25.21198 -24.62193 -24.25340 -23.47378 -21.99821 -21.39095 -20.53363 -19.76440 -19.11926 -18.61601 -17.87418 -17.41220 -16.86057 -16.09525 -15.71011 -15.21083 -15.14460 -14.78626 -14.67990 -14.25425 -13.98669 -13.63801 -13.44208 -13.40197 -13.20514 -12.98597 -12.78222 -12.42549 -11.83813 -11.59526 -11.45724 -11.28774 -10.99912 -10.89555 -10.65157 -10.54927 -10.29682 -10.22229 -10.12534 -9.98494 -9.91785 -9.84395 -9.62293 -9.37801 -9.26132 -8.90787 -8.70348 -8.56199 -6.83118 -5.61117 -3.05023 0.16986 0.93128 2.11452 2.21591 2.90014 3.23881 3.42545 3.47719 3.49538 3.68728 3.72908 3.99724 4.28523 4.51211 4.68540 4.73830 4.81954 4.97298 5.16955 5.31285 5.39094 5.44656 5.52690 5.65736 5.73398 5.76049 5.88030 5.91221 6.03574 6.14327 6.15708 6.21957 6.27274 6.37810 6.43543 6.58485 6.63355 6.66216 6.80872 6.86579 6.98238 7.12570 7.25624 7.36295 7.45151 7.64253 7.79755 7.87331 8.37257 8.44783 9.24588 9.83745 10.51324 11.40176 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.002697 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.925175 B =10378.588550 C =10545.162564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.143 3.857 11 C -0.112 4.112 12 H 0.068 0.932 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.155 3.845 17 N -0.687 5.687 18 C 0.569 3.431 19 O -0.521 6.521 20 C 0.129 3.871 21 C -0.124 4.124 22 C -0.027 4.027 23 C 0.019 3.981 24 N -0.492 5.492 25 C 0.283 3.717 26 N -0.588 5.588 27 H 0.431 0.569 28 C 0.235 3.765 29 N -0.454 5.454 30 C 0.138 3.862 31 H 0.252 0.748 32 H 0.003 0.997 33 H 0.130 0.870 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.405 0.595 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.227 0.773 44 H 0.055 0.945 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -22.720 -1.452 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.341 4.341 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.017 3.983 11 C -0.132 4.132 12 H 0.087 0.913 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.151 4.151 16 C 0.069 3.931 17 N -0.337 5.337 18 C 0.352 3.648 19 O -0.396 6.396 20 C -0.020 4.020 21 C -0.148 4.148 22 C -0.055 4.055 23 C -0.102 4.102 24 N -0.212 5.212 25 C -0.005 4.005 26 N -0.203 5.203 27 H 0.271 0.729 28 C -0.003 4.003 29 N -0.170 5.170 30 C 0.011 3.989 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.147 0.853 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.241 0.759 41 H 0.177 0.823 42 H 0.167 0.833 43 H 0.243 0.757 44 H 0.074 0.926 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.580 -22.334 -1.254 22.654 hybrid contribution -0.461 0.730 -0.419 0.960 sum -4.041 -21.604 -1.673 22.042 Atomic orbital electron populations 1.69584 1.04847 1.24592 1.58278 1.24750 0.95710 0.97596 1.02800 0.86051 0.78549 0.83286 0.77532 1.21739 1.21700 1.20683 1.19131 0.90558 0.82196 1.42203 0.90343 1.44801 1.01570 0.99465 1.86084 1.21980 0.85548 0.94515 0.96244 1.23025 0.93875 0.98802 0.97533 0.91322 1.22433 0.98831 0.99569 0.93780 1.22600 0.96586 0.98477 0.98622 1.22667 0.97157 1.02201 0.93038 1.21941 0.97592 0.80588 0.92980 1.45960 1.12277 1.16472 1.58984 1.17665 0.84743 0.82887 0.79479 1.90817 1.26621 1.74506 1.47688 1.21139 0.88065 0.95574 0.97226 1.21624 1.00504 0.93137 0.99500 1.20477 0.94951 0.95642 0.94409 1.19876 0.95193 0.92425 1.02712 1.70446 1.08613 1.24062 1.18059 1.25550 0.92138 0.86186 0.96580 1.42881 1.11633 1.15548 1.50231 0.72866 1.18882 0.88544 0.92321 1.00533 1.66228 1.25841 1.14662 1.10292 1.21834 0.94900 0.85829 0.96343 0.93733 0.97877 0.85281 0.92564 0.90111 0.92555 0.92078 0.91700 0.90170 0.75947 0.82271 0.83317 0.75728 0.92642 0.96515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.08 55.49 0.56 -25.92 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.21 -5.95 10.33 -15.06 -0.16 -6.11 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.59 -15.36 3.42 -169.93 -0.58 -15.95 16 10 C 0.14 3.42 5.62 -3.25 -0.02 3.40 16 11 C -0.11 -2.11 3.63 -88.53 -0.32 -2.43 16 12 H 0.07 1.15 7.71 -51.93 -0.40 0.74 16 13 C -0.11 -1.89 6.25 -24.96 -0.16 -2.04 16 14 C -0.13 -1.95 6.92 -24.57 -0.17 -2.12 16 15 C -0.11 -1.99 5.49 -24.95 -0.14 -2.13 16 16 C 0.16 2.89 0.93 -129.72 -0.12 2.77 16 17 N -0.69 -11.06 5.18 -46.56 -0.24 -11.30 16 18 C 0.57 9.21 7.09 -12.27 -0.09 9.13 16 19 O -0.52 -9.66 14.20 5.33 0.08 -9.58 16 20 C 0.13 1.77 6.74 -82.96 -0.56 1.21 16 21 C -0.12 -1.46 9.55 -39.48 -0.38 -1.83 16 22 C -0.03 -0.29 10.16 -39.42 -0.40 -0.69 16 23 C 0.02 0.22 7.25 -84.57 -0.61 -0.39 16 24 N -0.49 -4.97 11.27 -11.93 -0.13 -5.11 16 25 C 0.28 1.71 12.96 -89.74 -1.16 0.55 16 26 N -0.59 -4.12 6.22 -13.21 -0.08 -4.20 16 27 H 0.43 1.70 8.96 -40.82 -0.37 1.34 16 28 C 0.24 2.66 8.46 -155.74 -1.32 1.34 16 29 N -0.45 -5.87 9.54 -8.82 -0.08 -5.96 16 30 C 0.14 3.11 5.37 -2.44 -0.01 3.10 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.13 3.43 4.93 -51.93 -0.26 3.17 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.64 7.62 -51.93 -0.40 1.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.14 6.63 -51.92 -0.34 0.79 16 39 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 40 H 0.40 5.86 7.60 -40.82 -0.31 5.55 16 41 H 0.16 1.71 7.61 -52.49 -0.40 1.31 16 42 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.23 0.13 8.06 -52.48 -0.42 -0.29 16 44 H 0.06 1.29 7.52 -51.93 -0.39 0.90 16 45 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -34.21 362.05 -11.52 -45.73 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.76 Total: 6.42 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -5.71 Total: 3.28 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.56 Total: -68.44 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.21 -11.52 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098897406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.796 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds