Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48498 * 109.46907 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46931 * 120.00185 * 3 2 1 7 7 C 1.38815 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99362 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00300 * 0.02562 * 7 2 1 10 10 C 1.47216 * 126.70389 * 359.97175 * 9 7 2 11 11 C 1.53781 * 106.38184 * 211.28698 * 10 9 7 12 12 H 1.08996 * 112.38605 * 219.31066 * 11 10 9 13 13 C 1.54315 * 109.79023 * 95.21775 * 11 10 9 14 14 C 1.55061 * 103.93448 * 221.69156 * 13 11 10 15 15 C 1.55051 * 102.11272 * 40.05823 * 14 13 11 16 16 C 1.54323 * 103.93559 * 319.94748 * 15 14 13 17 17 N 1.46505 * 111.69027 * 262.78536 * 16 15 14 18 18 C 1.34770 * 120.00147 * 298.99084 * 17 16 15 19 19 O 1.21631 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.47212 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37750 * 119.93741 * 179.97438 * 20 18 17 22 22 C 1.39859 * 119.92966 * 179.97438 * 21 20 18 23 23 C 1.36308 * 119.81754 * 359.97438 * 22 21 20 24 24 C 1.40767 * 119.71225 * 0.02562 * 23 22 21 25 25 N 1.32816 * 132.74781 * 179.97438 * 24 23 22 26 26 C 1.32374 * 109.74442 * 179.97438 * 25 24 23 27 27 N 1.31384 * 109.61890 * 0.02562 * 26 25 24 28 28 N 1.36563 * 119.87309 * 359.97438 * 24 23 22 29 29 C 1.48672 * 126.20397 * 180.61807 * 9 7 2 30 30 H 0.96999 * 119.99859 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.07360 * 92.06076 * 10 9 7 32 32 H 1.08996 * 110.12375 * 330.53940 * 10 9 7 33 33 H 1.08999 * 110.53649 * 103.08107 * 13 11 10 34 34 H 1.08994 * 110.53627 * 340.30115 * 13 11 10 35 35 H 1.08992 * 110.90514 * 281.84949 * 14 13 11 36 36 H 1.09002 * 110.90138 * 158.25711 * 14 13 11 37 37 H 1.08994 * 110.53402 * 201.33165 * 15 14 13 38 38 H 1.09004 * 110.53475 * 78.55352 * 15 14 13 39 39 H 0.97001 * 119.99681 * 118.98530 * 17 16 15 40 40 H 1.08004 * 120.03866 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.09633 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.14234 * 180.02562 * 23 22 21 43 43 H 1.08001 * 125.18468 * 179.97438 * 26 25 24 44 44 H 1.09006 * 110.90723 * 29.98613 * 29 9 7 45 45 H 1.08998 * 109.94712 * 267.98376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1366 -2.5598 0.0006 11 6 -0.4202 -3.8627 0.7668 12 1 -1.2230 -4.4443 0.3138 13 6 -0.7336 -3.5427 2.2435 14 6 0.0248 -4.6411 3.0327 15 6 1.3550 -4.7489 2.2434 16 6 0.9212 -4.6371 0.7667 17 7 0.7880 -5.9548 0.1402 18 6 1.8571 -6.7708 0.0533 19 8 2.9327 -6.4131 0.4946 20 6 1.7235 -8.0945 -0.5767 21 6 2.8172 -8.9273 -0.6652 22 6 2.6899 -10.1851 -1.2633 23 6 1.4827 -10.5823 -1.7561 24 6 0.3725 -9.7221 -1.6596 25 7 -0.8940 -9.8384 -2.0423 26 6 -1.5604 -8.7403 -1.7224 27 7 -0.7521 -7.8905 -1.1301 28 7 0.5106 -8.4966 -1.0731 29 6 1.9253 -3.7484 0.0140 30 1 -0.4850 0.8400 0.0004 31 1 -0.5039 -2.6400 -1.0225 32 1 -0.6130 -1.7186 0.5040 33 1 -1.8055 -3.6092 2.4299 34 1 -0.3590 -2.5541 2.5083 35 1 -0.5201 -5.5847 3.0073 36 1 0.2067 -4.3262 4.0602 37 1 1.8332 -5.7105 2.4297 38 1 2.0242 -3.9302 2.5083 39 1 -0.0696 -6.2399 -0.2120 40 1 3.7718 -8.6096 -0.2725 41 1 3.5458 -10.8400 -1.3346 42 1 1.3784 -11.5526 -2.2187 43 1 -2.6084 -8.5688 -1.9192 44 1 2.8842 -3.7456 0.5323 45 1 2.0523 -4.1089 -1.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098924042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 125.956894 kcal Electronic energy + Delta-G solvation = -30468.210488 eV Core-core repulsion = 26489.052796 eV Total energy + Delta-G solvation = -3979.157693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.02639 -40.32719 -38.67769 -37.48597 -34.50310 -34.19359 -33.13128 -31.37334 -31.29214 -30.31983 -29.39819 -27.82580 -25.30465 -24.65736 -24.21537 -23.79351 -22.89006 -21.28182 -20.56293 -19.70518 -18.89786 -18.20247 -17.65546 -17.17332 -16.67409 -16.60372 -16.00309 -15.65432 -14.97456 -14.75432 -14.49973 -14.37370 -14.01118 -13.49641 -13.47514 -13.28584 -13.12669 -13.02382 -12.67199 -12.39703 -12.06898 -11.81739 -11.56441 -11.34311 -11.02792 -10.90204 -10.68235 -10.58812 -10.54897 -10.31739 -10.24860 -10.12697 -9.99473 -9.94601 -9.93638 -9.75463 -9.56084 -8.83657 -8.66686 -8.57583 -6.85515 -5.62549 -3.06903 -0.10385 0.56642 1.62622 2.15300 2.76673 3.01612 3.22575 3.41957 3.45923 3.47273 3.58906 3.80061 4.37938 4.42218 4.50064 4.52561 4.81729 4.92453 5.01332 5.13184 5.35180 5.36464 5.50379 5.55096 5.63108 5.75760 5.82540 5.85468 5.86971 6.00743 6.04314 6.11150 6.13476 6.22400 6.25692 6.34546 6.39228 6.54277 6.62189 6.74995 6.82335 6.95257 7.06959 7.43895 7.54965 7.61243 7.70305 7.84356 8.23053 8.41274 9.22566 9.81618 10.49328 11.38633 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003185 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.062081 B = 8788.809106 C = 9058.099818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.143 3.857 11 C -0.112 4.112 12 H 0.069 0.931 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.154 3.846 17 N -0.688 5.688 18 C 0.553 3.447 19 O -0.517 6.517 20 C 0.097 3.903 21 C -0.086 4.086 22 C -0.067 4.067 23 C -0.087 4.087 24 C 0.277 3.723 25 N -0.543 5.543 26 C 0.247 3.753 27 N -0.347 5.347 28 N -0.274 5.274 29 C 0.139 3.861 30 H 0.253 0.747 31 H 0.004 0.996 32 H 0.131 0.869 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.412 0.588 40 H 0.176 0.824 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.230 0.770 44 H 0.055 0.945 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -21.947 -0.077 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.132 4.132 12 H 0.088 0.912 13 C -0.146 4.146 14 C -0.163 4.163 15 C -0.150 4.150 16 C 0.068 3.932 17 N -0.342 5.342 18 C 0.336 3.664 19 O -0.393 6.393 20 C -0.015 4.015 21 C -0.109 4.109 22 C -0.093 4.093 23 C -0.108 4.108 24 C 0.024 3.976 25 N -0.273 5.273 26 C -0.052 4.052 27 N -0.179 5.179 28 N -0.051 5.051 29 C 0.012 3.988 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.254 0.746 40 H 0.193 0.807 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.246 0.754 44 H 0.074 0.926 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.238 -20.911 0.292 20.915 hybrid contribution 0.059 0.451 -0.403 0.608 sum 0.297 -20.460 -0.111 20.463 Atomic orbital electron populations 1.69578 1.04850 1.24768 1.57985 1.24757 0.95715 0.97609 1.02649 0.86119 0.78369 0.82934 0.77902 1.21285 1.21582 1.21150 1.19077 0.90522 0.82191 1.42619 0.90399 1.44783 1.01564 0.99371 1.86098 1.21982 0.85484 0.94459 0.96300 1.23028 0.93824 0.98757 0.97607 0.91237 1.22439 0.98926 0.99526 0.93701 1.22601 0.96502 0.98531 0.98653 1.22664 0.97257 1.02105 0.92997 1.21983 0.97842 0.80405 0.92998 1.46447 1.12690 1.16735 1.58339 1.17490 0.85504 0.82965 0.80415 1.90866 1.26287 1.74191 1.47950 1.20862 0.82604 0.97382 1.00623 1.21538 0.98104 0.92750 0.98514 1.21294 0.97864 0.95534 0.94615 1.20522 0.88813 0.99931 1.01542 1.21858 0.94450 0.86301 0.94983 1.70850 1.01133 1.26096 1.29175 1.26195 1.00915 0.86195 0.91941 1.78062 0.87213 1.21585 1.31050 1.47906 1.07702 1.13224 1.36289 1.21814 0.94846 0.85968 0.96195 0.93630 0.97837 0.85216 0.92431 0.90033 0.92612 0.91969 0.91873 0.90042 0.74629 0.80695 0.82242 0.82055 0.75375 0.92632 0.96724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 10.08 55.49 0.56 -25.99 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.07 10.33 -15.06 -0.16 -6.23 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.59 -15.49 3.42 -169.94 -0.58 -16.08 16 10 C 0.14 3.50 5.61 -3.25 -0.02 3.48 16 11 C -0.11 -2.19 3.63 -88.53 -0.32 -2.51 16 12 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 13 C -0.11 -1.93 6.25 -24.95 -0.16 -2.09 16 14 C -0.13 -2.00 6.92 -24.56 -0.17 -2.17 16 15 C -0.11 -2.02 5.50 -24.95 -0.14 -2.16 16 16 C 0.15 2.96 0.93 -129.73 -0.12 2.84 16 17 N -0.69 -11.76 5.18 -46.80 -0.24 -12.01 16 18 C 0.55 8.98 7.06 -12.62 -0.09 8.89 16 19 O -0.52 -9.32 14.20 5.25 0.07 -9.25 16 20 C 0.10 1.25 6.80 -82.05 -0.56 0.70 16 21 C -0.09 -0.78 9.58 -39.15 -0.38 -1.15 16 22 C -0.07 -0.41 10.04 -39.67 -0.40 -0.80 16 23 C -0.09 -0.65 10.09 -39.32 -0.40 -1.05 16 24 C 0.28 3.19 7.88 -156.37 -1.23 1.96 16 25 N -0.54 -6.57 11.24 -13.99 -0.16 -6.72 16 26 C 0.25 2.76 12.98 -92.00 -1.19 1.57 16 27 N -0.35 -4.67 9.98 29.25 0.29 -4.38 16 28 N -0.27 -3.59 3.93 -8.82 -0.03 -3.63 16 29 C 0.14 3.18 5.36 -2.44 -0.01 3.16 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.13 3.49 4.93 -51.93 -0.26 3.23 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.67 7.61 -51.93 -0.40 1.28 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.11 6.64 -51.93 -0.35 0.77 16 38 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 39 H 0.41 6.74 5.24 -40.82 -0.21 6.53 16 40 H 0.18 1.38 7.59 -52.48 -0.40 0.98 16 41 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.23 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.06 1.30 7.52 -51.93 -0.39 0.91 16 45 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -33.59 359.11 -10.85 -44.44 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.72 Total: 7.05 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -5.43 Total: 4.00 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -0.16 Total: -68.80 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.59 -10.85 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098924042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.399 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds