Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48498 * 109.46907 * 239.99905 * 3 2 1 5 5 H 1.48495 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46931 * 120.00185 * 3 2 1 7 7 C 1.38815 * 119.99475 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99362 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00300 * 0.02562 * 7 2 1 10 10 C 1.47216 * 126.70389 * 359.97175 * 9 7 2 11 11 C 1.53781 * 106.38184 * 211.28698 * 10 9 7 12 12 H 1.08996 * 112.38605 * 219.31066 * 11 10 9 13 13 C 1.54315 * 109.79023 * 95.21775 * 11 10 9 14 14 C 1.55061 * 103.93448 * 221.69156 * 13 11 10 15 15 C 1.55051 * 102.11272 * 40.05823 * 14 13 11 16 16 C 1.54323 * 103.93559 * 319.94748 * 15 14 13 17 17 N 1.46505 * 111.69027 * 262.78536 * 16 15 14 18 18 C 1.34770 * 120.00147 * 298.99084 * 17 16 15 19 19 O 1.21631 * 120.00132 * 359.97438 * 18 17 16 20 20 C 1.47212 * 120.00040 * 180.02562 * 18 17 16 21 21 C 1.37750 * 119.93741 * 179.97438 * 20 18 17 22 22 C 1.39859 * 119.92966 * 179.97438 * 21 20 18 23 23 C 1.36308 * 119.81754 * 359.97438 * 22 21 20 24 24 C 1.40767 * 119.71225 * 0.02562 * 23 22 21 25 25 N 1.32816 * 132.74781 * 179.97438 * 24 23 22 26 26 C 1.32374 * 109.74442 * 179.97438 * 25 24 23 27 27 N 1.31384 * 109.61890 * 0.02562 * 26 25 24 28 28 N 1.36563 * 119.87309 * 359.97438 * 24 23 22 29 29 C 1.48672 * 126.20397 * 180.61807 * 9 7 2 30 30 H 0.96999 * 119.99859 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.07360 * 92.06076 * 10 9 7 32 32 H 1.08996 * 110.12375 * 330.53940 * 10 9 7 33 33 H 1.08999 * 110.53649 * 103.08107 * 13 11 10 34 34 H 1.08994 * 110.53627 * 340.30115 * 13 11 10 35 35 H 1.08992 * 110.90514 * 281.84949 * 14 13 11 36 36 H 1.09002 * 110.90138 * 158.25711 * 14 13 11 37 37 H 1.08994 * 110.53402 * 201.33165 * 15 14 13 38 38 H 1.09004 * 110.53475 * 78.55352 * 15 14 13 39 39 H 0.97001 * 119.99681 * 118.98530 * 17 16 15 40 40 H 1.08004 * 120.03866 * 0.02562 * 21 20 18 41 41 H 1.08002 * 120.09633 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.14234 * 180.02562 * 23 22 21 43 43 H 1.08001 * 125.18468 * 179.97438 * 26 25 24 44 44 H 1.09006 * 110.90723 * 29.98613 * 29 9 7 45 45 H 1.08998 * 109.94712 * 267.98376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1366 -2.5598 0.0006 11 6 -0.4202 -3.8627 0.7668 12 1 -1.2230 -4.4443 0.3138 13 6 -0.7336 -3.5427 2.2435 14 6 0.0248 -4.6411 3.0327 15 6 1.3550 -4.7489 2.2434 16 6 0.9212 -4.6371 0.7667 17 7 0.7880 -5.9548 0.1402 18 6 1.8571 -6.7708 0.0533 19 8 2.9327 -6.4131 0.4946 20 6 1.7235 -8.0945 -0.5767 21 6 2.8172 -8.9273 -0.6652 22 6 2.6899 -10.1851 -1.2633 23 6 1.4827 -10.5823 -1.7561 24 6 0.3725 -9.7221 -1.6596 25 7 -0.8940 -9.8384 -2.0423 26 6 -1.5604 -8.7403 -1.7224 27 7 -0.7521 -7.8905 -1.1301 28 7 0.5106 -8.4966 -1.0731 29 6 1.9253 -3.7484 0.0140 30 1 -0.4850 0.8400 0.0004 31 1 -0.5039 -2.6400 -1.0225 32 1 -0.6130 -1.7186 0.5040 33 1 -1.8055 -3.6092 2.4299 34 1 -0.3590 -2.5541 2.5083 35 1 -0.5201 -5.5847 3.0073 36 1 0.2067 -4.3262 4.0602 37 1 1.8332 -5.7105 2.4297 38 1 2.0242 -3.9302 2.5083 39 1 -0.0696 -6.2399 -0.2120 40 1 3.7718 -8.6096 -0.2725 41 1 3.5458 -10.8400 -1.3346 42 1 1.3784 -11.5526 -2.2187 43 1 -2.6084 -8.5688 -1.9192 44 1 2.8842 -3.7456 0.5323 45 1 2.0523 -4.1089 -1.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098924042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 105.427251 kcal Electronic energy + Delta-G solvation = -30469.100720 eV Core-core repulsion = 26489.052796 eV Total energy + Delta-G solvation = -3980.047925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.83504 -41.73415 -39.95899 -38.44891 -36.27280 -35.32276 -34.28463 -33.37793 -32.07524 -31.28406 -30.94148 -29.53677 -26.68505 -26.38983 -25.60790 -24.56692 -23.84522 -22.61218 -22.30516 -21.05078 -20.41636 -19.16655 -19.06767 -18.46821 -17.73363 -17.48309 -17.20092 -16.74275 -16.72134 -16.24522 -15.79285 -15.55483 -15.33112 -15.21250 -15.00378 -14.77886 -14.50932 -13.96695 -13.71781 -13.62523 -13.27633 -13.13807 -12.83662 -12.81000 -12.78967 -12.30543 -12.25404 -12.17257 -12.09723 -11.97110 -11.77908 -11.74600 -11.67386 -11.51663 -11.38833 -11.06187 -10.77614 -10.73194 -10.21121 -9.44636 -8.96978 -7.77664 -5.26479 -0.88025 -0.15244 0.82941 1.27670 1.45310 1.48723 1.55137 1.79911 1.85597 2.35569 2.46948 2.82672 2.99993 3.28340 3.35998 3.50276 3.63643 3.74052 3.80729 3.81804 3.91251 4.05464 4.30695 4.32054 4.38054 4.40550 4.52643 4.61733 4.71468 4.78096 4.79878 4.86558 4.94408 4.95808 5.02205 5.06725 5.13057 5.18283 5.22665 5.28533 5.34932 5.42429 5.46475 5.52902 5.60673 5.75811 6.31285 6.37721 6.77260 6.96383 7.07373 7.69545 8.37828 9.21111 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003185 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.062081 B = 8788.809106 C = 9058.099818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.148 3.852 11 C -0.104 4.104 12 H 0.088 0.912 13 C -0.103 4.103 14 C -0.110 4.110 15 C -0.107 4.107 16 C 0.165 3.835 17 N -0.691 5.691 18 C 0.552 3.448 19 O -0.545 6.545 20 C 0.050 3.950 21 C -0.057 4.057 22 C -0.049 4.049 23 C -0.075 4.075 24 C 0.259 3.741 25 N -0.560 5.560 26 C 0.246 3.754 27 N -0.385 5.385 28 N -0.283 5.283 29 C 0.143 3.857 30 H 0.250 0.750 31 H -0.026 1.026 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.416 0.584 40 H 0.188 0.812 41 H 0.214 0.786 42 H 0.197 0.803 43 H 0.261 0.739 44 H 0.043 0.957 45 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -24.918 0.244 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.811 3.189 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.022 3.978 11 C -0.124 4.124 12 H 0.106 0.894 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.078 3.922 17 N -0.346 5.346 18 C 0.338 3.662 19 O -0.423 6.423 20 C -0.060 4.060 21 C -0.080 4.080 22 C -0.074 4.074 23 C -0.096 4.096 24 C 0.007 3.993 25 N -0.291 5.291 26 C -0.054 4.054 27 N -0.218 5.218 28 N -0.060 5.060 29 C 0.016 3.984 30 H 0.060 0.940 31 H -0.008 1.008 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.259 0.741 40 H 0.205 0.795 41 H 0.230 0.770 42 H 0.214 0.786 43 H 0.276 0.724 44 H 0.062 0.938 45 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 0.898 -23.926 0.610 23.950 hybrid contribution -0.053 1.255 -0.620 1.401 sum 0.846 -22.670 -0.010 22.686 Atomic orbital electron populations 1.69821 1.06023 1.25204 1.58205 1.25587 0.96677 1.00682 1.02312 0.85090 0.77164 0.78586 0.78091 1.20816 1.21425 1.20184 1.19389 0.90854 0.83491 1.43290 0.90593 1.45008 1.02413 1.00064 1.86177 1.21803 0.84597 0.96358 0.95017 1.22906 0.94665 0.96437 0.98390 0.89353 1.22350 1.00735 0.98590 0.92429 1.22547 0.94676 0.98704 0.98850 1.22567 0.98214 1.01378 0.92396 1.21646 0.96192 0.81081 0.93315 1.46371 1.13511 1.15908 1.58844 1.17956 0.84618 0.84013 0.79647 1.90835 1.26978 1.75273 1.49238 1.20596 0.84114 0.96894 1.04444 1.22006 0.97112 0.93048 0.95884 1.21834 0.98973 0.94349 0.92253 1.21143 0.87805 1.00405 1.00199 1.22605 0.95385 0.86410 0.94945 1.70855 1.01705 1.26562 1.29972 1.26841 1.01990 0.85591 0.90957 1.77934 0.88018 1.23168 1.32726 1.47848 1.07468 1.13813 1.36888 1.21809 0.95516 0.85535 0.95495 0.93981 1.00761 0.87478 0.89792 0.93174 0.90422 0.90093 0.91326 0.92368 0.74116 0.79522 0.76967 0.78600 0.72360 0.93825 0.98588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 10.08 21.65 0.22 -55.96 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 3 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.24 -14.18 10.33 84.04 0.87 -13.31 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.61 -33.68 3.42 -691.56 -2.37 -36.04 16 10 C 0.15 7.61 5.61 86.51 0.49 8.10 16 11 C -0.10 -4.16 3.63 -9.44 -0.03 -4.19 16 12 H 0.09 3.19 7.71 -2.39 -0.02 3.17 16 13 C -0.10 -3.66 6.25 31.75 0.20 -3.46 16 14 C -0.11 -3.36 6.92 32.00 0.22 -3.14 16 15 C -0.11 -3.89 5.50 31.75 0.17 -3.72 16 16 C 0.16 6.52 0.93 4.96 0.00 6.52 16 17 N -0.69 -24.12 5.18 -420.23 -2.18 -26.30 16 18 C 0.55 18.14 7.06 86.60 0.61 18.75 16 19 O -0.54 -20.02 14.20 -4.13 -0.06 -20.08 16 20 C 0.05 1.26 6.80 40.57 0.28 1.54 16 21 C -0.06 -0.88 9.58 22.55 0.22 -0.67 16 22 C -0.05 -0.35 10.04 22.21 0.22 -0.13 16 23 C -0.07 -0.81 10.09 22.44 0.23 -0.59 16 24 C 0.26 5.46 7.88 134.15 1.06 6.52 16 25 N -0.56 -12.81 11.24 -198.17 -2.23 -15.04 16 26 C 0.25 5.33 12.98 180.83 2.35 7.67 16 27 N -0.39 -10.36 9.98 -61.38 -0.61 -10.97 16 28 N -0.28 -7.21 3.93 -181.81 -0.71 -7.93 16 29 C 0.14 6.91 5.36 86.22 0.46 7.38 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H -0.03 -1.42 8.14 -2.39 -0.02 -1.44 16 32 H 0.11 6.07 4.93 -2.39 -0.01 6.06 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 2.10 7.61 -2.39 -0.02 2.08 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 2.41 6.64 -2.39 -0.02 2.39 16 38 H 0.06 2.37 7.57 -2.39 -0.02 2.35 16 39 H 0.42 13.86 5.24 -92.71 -0.49 13.37 16 40 H 0.19 2.42 7.59 -2.91 -0.02 2.40 16 41 H 0.21 -0.65 8.06 -2.91 -0.02 -0.67 16 42 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.26 3.27 8.06 -2.91 -0.02 3.24 16 44 H 0.04 2.17 7.52 -2.38 -0.02 2.15 16 45 H 0.00 -0.19 8.05 -2.39 -0.02 -0.21 16 Total: -1.00 -78.65 359.11 2.45 -76.20 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.55 Total: 23.33 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 7.80 Total: 24.28 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -7.88 Total: -152.25 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.65 2.45 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098924042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.632 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds