Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48492 * 109.47395 * 269.99713 * 3 2 1 5 5 H 1.48507 * 109.46962 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.47116 * 149.99717 * 3 2 1 7 7 C 1.38814 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99524 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99984 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.35371 * 126.73044 * 94.97004 * 11 10 9 13 13 N 1.36119 * 106.05081 * 180.02562 * 12 11 10 14 14 C 1.40244 * 125.94450 * 180.02562 * 13 12 11 15 15 C 1.38847 * 120.06471 * 4.99833 * 14 13 12 16 16 C 1.38100 * 119.93388 * 179.97438 * 15 14 13 17 17 C 1.38296 * 120.06403 * 0.02562 * 16 15 14 18 18 C 1.38253 * 120.13257 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.96502 * 180.02562 * 18 17 16 20 20 N 1.46490 * 109.47058 * 90.00635 * 19 18 17 21 21 C 1.34784 * 120.00274 * 179.97438 * 20 19 18 22 22 O 1.21285 * 119.99408 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00391 * 179.97438 * 21 20 19 24 24 C 1.52995 * 117.50279 * 248.62231 * 23 21 20 25 25 C 1.52998 * 60.00120 * 252.51415 * 24 23 21 26 26 C 1.38149 * 120.06561 * 359.75225 * 18 17 16 27 27 N 1.28737 * 108.11172 * 0.02562 * 13 12 11 28 28 N 1.28604 * 110.23417 * 359.97438 * 27 13 12 29 29 H 0.97001 * 119.99620 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99915 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47406 * 59.99219 * 10 9 7 32 32 H 1.09008 * 109.46832 * 299.99163 * 10 9 7 33 33 H 1.08001 * 126.97521 * 359.96327 * 12 11 10 34 34 H 1.08002 * 120.03172 * 359.95100 * 15 14 13 35 35 H 1.07992 * 119.96400 * 180.02562 * 16 15 14 36 36 H 1.08005 * 119.93188 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.46697 * 210.00439 * 19 18 17 38 38 H 1.08992 * 109.47388 * 329.99849 * 19 18 17 39 39 H 0.97005 * 120.00558 * 359.97438 * 20 19 18 40 40 H 1.08997 * 115.54492 * 34.33346 * 23 21 20 41 41 H 1.09007 * 117.49333 * 0.02562 * 24 23 21 42 42 H 1.08995 * 117.49959 * 145.01895 * 24 23 21 43 43 H 1.08998 * 117.49662 * 252.51523 * 25 24 23 44 44 H 1.08999 * 117.51884 * 107.48008 * 25 24 23 45 45 H 1.07998 * 120.03506 * 180.25455 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1957 0.0011 12 6 6.4068 -2.1403 1.0819 13 7 7.6512 -1.8661 0.6031 14 6 8.8149 -1.7182 1.3717 15 6 8.7796 -1.9536 2.7396 16 6 9.9273 -1.8076 3.4938 17 6 11.1107 -1.4268 2.8879 18 6 11.1489 -1.1917 1.5260 19 6 12.4406 -0.7775 0.8696 20 7 13.1726 -1.9702 0.4365 21 6 14.3642 -1.8427 -0.1805 22 8 14.8305 -0.7404 -0.3767 23 6 15.1175 -3.0697 -0.6256 24 6 16.4175 -3.4054 0.1080 25 6 16.4643 -2.8585 -1.3201 26 6 10.0054 -1.3416 0.7655 27 7 7.5740 -1.7662 -0.6781 28 7 6.3631 -1.9574 -1.0669 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0007 31 1 3.8490 -3.0425 -0.8891 32 1 3.8485 -3.0427 0.8910 33 1 6.1252 -2.2834 2.1147 34 1 7.8555 -2.2502 3.2134 35 1 9.9005 -1.9910 4.5577 36 1 12.0071 -1.3137 3.4797 37 1 12.2239 -0.1503 0.0049 38 1 13.0469 -0.2177 1.5816 39 1 12.7999 -2.8519 0.5937 40 1 14.5012 -3.9022 -0.9649 41 1 16.7277 -2.7389 0.9129 42 1 16.6567 -4.4590 0.2516 43 1 16.7342 -3.5524 -2.1162 44 1 16.8053 -1.8321 -1.4555 45 1 10.0367 -1.1618 -0.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099600482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 139.743444 kcal Electronic energy + Delta-G solvation = -27338.768349 eV Core-core repulsion = 23360.208486 eV Total energy + Delta-G solvation = -3978.559863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.41562 -40.59411 -39.80918 -36.85240 -35.82804 -35.21190 -34.24253 -32.29249 -31.81624 -30.56700 -30.20096 -27.47705 -26.27957 -24.59107 -24.28076 -22.96181 -22.83914 -22.13950 -21.19198 -20.71985 -20.56981 -18.58284 -17.92046 -17.56365 -16.71174 -16.59832 -16.45590 -16.14562 -15.63524 -15.29249 -14.88395 -14.63136 -14.56505 -14.47108 -14.12580 -13.62579 -13.31236 -13.20124 -13.04838 -13.00597 -12.83431 -12.41068 -12.15037 -12.07365 -11.85692 -11.61737 -11.23091 -11.16391 -11.06401 -10.97860 -10.90287 -10.73042 -10.41176 -10.18810 -9.62228 -9.61629 -9.55099 -9.26852 -8.94819 -8.88139 -7.27177 -5.78210 -3.14504 0.23730 0.59393 1.77738 2.02236 2.11014 2.58456 2.65574 3.21449 3.33939 3.38294 3.43371 3.46657 3.88435 4.11478 4.17635 4.27420 4.32207 4.35534 4.47117 4.58724 4.59366 4.60407 4.63668 4.78051 4.99728 5.05750 5.07063 5.19394 5.19507 5.24260 5.28694 5.40863 5.42470 5.54279 5.60816 5.67032 5.70606 5.80471 5.85519 5.86203 6.09313 6.16591 6.46196 6.58325 6.67824 6.97330 7.73303 7.95291 8.40132 8.49975 9.17622 9.90265 10.09684 11.39689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.001849 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.047263 B =15141.651538 C =15342.867961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.094 0.906 9 N -0.750 5.750 10 C 0.237 3.763 11 C -0.003 4.003 12 C -0.040 4.040 13 N -0.255 5.255 14 C 0.135 3.865 15 C -0.111 4.111 16 C -0.097 4.097 17 C -0.098 4.098 18 C -0.092 4.092 19 C 0.162 3.838 20 N -0.723 5.723 21 C 0.544 3.456 22 O -0.539 6.539 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.147 4.147 26 C -0.086 4.086 27 N -0.087 5.087 28 N -0.242 5.242 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.195 0.805 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.404 0.596 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.910 -9.185 8.383 36.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.112 0.888 9 N -0.396 5.396 10 C 0.108 3.892 11 C -0.139 4.139 12 C -0.188 4.188 13 N -0.043 5.043 14 C 0.044 3.956 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.094 4.094 19 C 0.039 3.961 20 N -0.375 5.375 21 C 0.330 3.670 22 O -0.416 6.416 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.184 4.184 26 C -0.107 4.107 27 N -0.065 5.065 28 N -0.110 5.110 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.212 0.788 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.239 0.761 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 34.694 -8.199 6.883 36.308 hybrid contribution -0.408 0.646 1.147 1.378 sum 34.286 -7.553 8.030 36.015 Atomic orbital electron populations 1.69696 1.05011 1.25879 1.57296 1.24624 0.95188 0.97113 1.01797 0.86570 0.79021 0.85056 0.77991 1.20899 1.21631 1.20646 1.19031 0.80107 0.94949 1.43447 0.88806 1.42648 1.03975 1.01686 1.91277 1.18962 0.79717 0.90047 1.00430 1.22606 0.99171 1.03938 0.88193 1.23625 0.83448 1.09221 1.02475 1.44646 1.06973 1.46189 1.06484 1.17638 0.84316 1.03427 0.90262 1.21075 1.00501 1.00650 0.90993 1.21037 0.91463 0.98617 1.00398 1.21246 0.98614 0.97905 0.93917 1.19688 0.94373 1.01440 0.93850 1.20193 0.88725 0.87578 0.99581 1.45973 1.20840 1.09972 1.60703 1.19706 0.80614 0.89850 0.76794 1.90721 1.67930 1.27423 1.55490 1.22199 0.91839 0.99084 1.08723 1.22950 0.97020 1.02596 0.96399 1.22971 0.96205 1.03761 0.95495 1.20908 0.90062 0.98301 1.01416 1.78334 1.16406 1.20014 0.91720 1.75122 0.95672 1.14029 1.26180 0.92983 0.80470 0.93157 0.93346 0.78810 0.84274 0.84214 0.84846 0.90000 0.89953 0.76141 0.85698 0.88221 0.87664 0.87762 0.87322 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 22.76 27.74 -169.99 -4.71 18.05 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.90 6.52 56.52 0.37 -6.54 16 7 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 9 N -0.75 -18.29 5.40 -61.08 -0.33 -18.62 16 10 C 0.24 4.67 6.82 -5.19 -0.04 4.63 16 11 C 0.00 -0.06 6.61 -82.77 -0.55 -0.60 16 12 C -0.04 -0.57 10.84 -16.67 -0.18 -0.75 16 13 N -0.26 -3.58 3.56 -10.47 -0.04 -3.62 16 14 C 0.14 1.43 6.67 -83.57 -0.56 0.87 16 15 C -0.11 -0.86 9.46 -39.41 -0.37 -1.23 16 16 C -0.10 -0.53 10.04 -39.61 -0.40 -0.93 16 17 C -0.10 -0.53 9.70 -39.55 -0.38 -0.91 16 18 C -0.09 -0.63 5.25 -104.65 -0.55 -1.18 16 19 C 0.16 1.12 5.80 -5.20 -0.03 1.09 16 20 N -0.72 -4.61 5.55 -61.48 -0.34 -4.95 16 21 C 0.54 4.57 7.61 -10.98 -0.08 4.49 16 22 O -0.54 -6.66 16.26 5.55 0.09 -6.57 16 23 C -0.20 -1.13 6.19 -91.77 -0.57 -1.70 16 24 C -0.15 -0.69 10.23 -26.73 -0.27 -0.96 16 25 C -0.15 -0.82 10.04 -26.73 -0.27 -1.09 16 26 C -0.09 -0.80 9.27 -39.41 -0.37 -1.17 16 27 N -0.09 -1.48 12.42 60.35 0.75 -0.73 16 28 N -0.24 -4.66 12.39 33.29 0.41 -4.24 16 29 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 30 H 0.36 8.98 5.52 -40.82 -0.23 8.75 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.19 2.01 7.13 -52.49 -0.37 1.63 16 34 H 0.14 0.88 6.79 -52.49 -0.36 0.52 16 35 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.40 1.78 8.46 -40.82 -0.35 1.44 16 40 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.11 0.78 7.67 -51.93 -0.40 0.38 16 45 H 0.14 1.47 7.70 -52.49 -0.40 1.07 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -36.91 389.31 -8.31 -45.22 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.92 Total: 4.51 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.87 Total: -6.42 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 1.23 Total: -60.65 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.09 Total: -6.57 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.91 -8.31 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099600482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.967 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds