Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48492 * 109.47395 * 269.99713 * 3 2 1 5 5 H 1.48507 * 109.46962 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.47116 * 149.99717 * 3 2 1 7 7 C 1.38814 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99524 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.46504 * 119.99984 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.35371 * 126.73044 * 94.97004 * 11 10 9 13 13 N 1.36119 * 106.05081 * 180.02562 * 12 11 10 14 14 C 1.40244 * 125.94450 * 180.02562 * 13 12 11 15 15 C 1.38847 * 120.06471 * 4.99833 * 14 13 12 16 16 C 1.38100 * 119.93388 * 179.97438 * 15 14 13 17 17 C 1.38296 * 120.06403 * 0.02562 * 16 15 14 18 18 C 1.38253 * 120.13257 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.96502 * 180.02562 * 18 17 16 20 20 N 1.46490 * 109.47058 * 90.00635 * 19 18 17 21 21 C 1.34784 * 120.00274 * 179.97438 * 20 19 18 22 22 O 1.21285 * 119.99408 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.00391 * 179.97438 * 21 20 19 24 24 C 1.52995 * 117.50279 * 248.62231 * 23 21 20 25 25 C 1.52998 * 60.00120 * 252.51415 * 24 23 21 26 26 C 1.38149 * 120.06561 * 359.75225 * 18 17 16 27 27 N 1.28737 * 108.11172 * 0.02562 * 13 12 11 28 28 N 1.28604 * 110.23417 * 359.97438 * 27 13 12 29 29 H 0.97001 * 119.99620 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99915 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47406 * 59.99219 * 10 9 7 32 32 H 1.09008 * 109.46832 * 299.99163 * 10 9 7 33 33 H 1.08001 * 126.97521 * 359.96327 * 12 11 10 34 34 H 1.08002 * 120.03172 * 359.95100 * 15 14 13 35 35 H 1.07992 * 119.96400 * 180.02562 * 16 15 14 36 36 H 1.08005 * 119.93188 * 180.02562 * 17 16 15 37 37 H 1.09003 * 109.46697 * 210.00439 * 19 18 17 38 38 H 1.08992 * 109.47388 * 329.99849 * 19 18 17 39 39 H 0.97005 * 120.00558 * 359.97438 * 20 19 18 40 40 H 1.08997 * 115.54492 * 34.33346 * 23 21 20 41 41 H 1.09007 * 117.49333 * 0.02562 * 24 23 21 42 42 H 1.08995 * 117.49959 * 145.01895 * 24 23 21 43 43 H 1.08998 * 117.49662 * 252.51523 * 25 24 23 44 44 H 1.08999 * 117.51884 * 107.48008 * 25 24 23 45 45 H 1.07998 * 120.03506 * 180.25455 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1957 0.0011 12 6 6.4068 -2.1403 1.0819 13 7 7.6512 -1.8661 0.6031 14 6 8.8149 -1.7182 1.3717 15 6 8.7796 -1.9536 2.7396 16 6 9.9273 -1.8076 3.4938 17 6 11.1107 -1.4268 2.8879 18 6 11.1489 -1.1917 1.5260 19 6 12.4406 -0.7775 0.8696 20 7 13.1726 -1.9702 0.4365 21 6 14.3642 -1.8427 -0.1805 22 8 14.8305 -0.7404 -0.3767 23 6 15.1175 -3.0697 -0.6256 24 6 16.4175 -3.4054 0.1080 25 6 16.4643 -2.8585 -1.3201 26 6 10.0054 -1.3416 0.7655 27 7 7.5740 -1.7662 -0.6781 28 7 6.3631 -1.9574 -1.0669 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3622 0.0007 31 1 3.8490 -3.0425 -0.8891 32 1 3.8485 -3.0427 0.8910 33 1 6.1252 -2.2834 2.1147 34 1 7.8555 -2.2502 3.2134 35 1 9.9005 -1.9910 4.5577 36 1 12.0071 -1.3137 3.4797 37 1 12.2239 -0.1503 0.0049 38 1 13.0469 -0.2177 1.5816 39 1 12.7999 -2.8519 0.5937 40 1 14.5012 -3.9022 -0.9649 41 1 16.7277 -2.7389 0.9129 42 1 16.6567 -4.4590 0.2516 43 1 16.7342 -3.5524 -2.1162 44 1 16.8053 -1.8321 -1.4555 45 1 10.0367 -1.1618 -0.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099600482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 113.740489 kcal Electronic energy + Delta-G solvation = -27339.895922 eV Core-core repulsion = 23360.208486 eV Total energy + Delta-G solvation = -3979.687436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.57321 -41.21736 -40.44226 -37.39774 -37.08972 -36.34059 -35.29272 -33.89434 -32.74745 -31.98985 -31.13283 -28.27769 -27.72628 -25.48309 -24.91817 -24.35460 -23.36073 -23.29338 -22.01817 -21.86486 -21.20635 -19.98950 -19.13987 -18.39887 -17.70399 -17.34730 -17.12344 -16.79048 -16.59489 -16.25798 -16.19947 -15.88291 -15.59177 -15.15946 -15.01693 -14.95058 -14.52395 -14.25900 -14.06834 -13.91614 -13.71536 -13.56094 -13.44625 -13.00786 -12.83592 -12.70712 -12.45871 -12.27450 -12.18684 -12.03431 -11.98870 -11.83514 -11.57689 -11.47731 -11.08259 -11.04953 -10.47217 -10.23967 -10.11321 -9.69755 -9.34845 -8.04405 -5.37945 -0.50626 0.02647 0.86222 1.17097 1.26800 1.33695 1.37789 1.41315 1.43161 2.08078 2.45044 2.63766 2.89939 3.12801 3.25556 3.31064 3.60623 3.69900 3.73701 3.80605 3.86088 3.90730 3.96719 3.98682 4.05295 4.07967 4.16385 4.21635 4.51161 4.53707 4.60033 4.72414 4.73420 4.82871 4.90799 4.96891 5.00445 5.01685 5.20169 5.20842 5.22717 5.28664 5.30756 5.50672 5.73508 5.81827 6.18961 6.43677 7.03012 7.14115 7.28675 7.77636 7.96911 9.16515 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.001849 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.047263 B =15141.651538 C =15342.867961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.054 4.054 3 Si 0.947 3.053 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.231 4.231 8 H 0.071 0.929 9 N -0.754 5.754 10 C 0.239 3.761 11 C -0.032 4.032 12 C -0.017 4.017 13 N -0.241 5.241 14 C 0.093 3.907 15 C -0.105 4.105 16 C -0.087 4.087 17 C -0.079 4.079 18 C -0.088 4.088 19 C 0.164 3.836 20 N -0.711 5.711 21 C 0.538 3.462 22 O -0.587 6.587 23 C -0.203 4.203 24 C -0.136 4.136 25 C -0.159 4.159 26 C -0.096 4.096 27 N -0.108 5.108 28 N -0.286 5.286 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.148 0.852 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.663 -10.123 11.539 39.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.247 4.247 3 Si 0.775 3.225 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.362 4.362 8 H 0.089 0.911 9 N -0.399 5.399 10 C 0.112 3.888 11 C -0.169 4.169 12 C -0.166 4.166 13 N -0.028 5.028 14 C 0.003 3.997 15 C -0.126 4.126 16 C -0.105 4.105 17 C -0.098 4.098 18 C -0.089 4.089 19 C 0.041 3.959 20 N -0.363 5.363 21 C 0.326 3.674 22 O -0.467 6.467 23 C -0.224 4.224 24 C -0.174 4.174 25 C -0.196 4.196 26 C -0.116 4.116 27 N -0.086 5.086 28 N -0.153 5.153 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.181 0.819 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.165 0.835 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.103 0.897 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 37.505 -9.187 10.046 39.900 hybrid contribution -1.090 0.837 0.262 1.399 sum 36.416 -8.350 10.308 38.757 Atomic orbital electron populations 1.69847 1.06719 1.26600 1.59583 1.25337 0.95972 1.00604 1.02742 0.85536 0.78490 0.80767 0.77681 1.21470 1.21469 1.18603 1.19060 0.81946 0.93988 1.41192 0.91129 1.42683 1.02664 1.03482 1.91112 1.18976 0.80960 0.88036 1.00848 1.22335 0.98416 1.06799 0.89377 1.24094 0.82696 1.06523 1.03268 1.44871 1.08060 1.44061 1.05855 1.18040 0.83395 1.06888 0.91340 1.21407 1.02202 0.99415 0.89538 1.21464 0.90272 0.96859 1.01876 1.21629 0.99882 0.95270 0.93045 1.19607 0.93163 1.01611 0.94539 1.20125 0.89039 0.87670 0.99077 1.45903 1.20156 1.10460 1.59743 1.20234 0.80899 0.90074 0.76205 1.90698 1.69172 1.29357 1.57499 1.22285 0.92158 0.98466 1.09461 1.23038 0.95292 1.03766 0.95256 1.23014 0.96392 1.03110 0.97090 1.20848 0.90892 0.99056 1.00829 1.78246 1.15613 1.21250 0.93451 1.75049 0.96711 1.15804 1.27732 0.93222 0.80613 0.94330 0.90783 0.74683 0.82444 0.80634 0.81928 0.91945 0.89239 0.74769 0.83477 0.88979 0.85109 0.85927 0.89666 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.59 13.97 21.65 0.30 -62.29 16 2 C -0.05 -3.24 5.50 84.86 0.47 -2.78 16 3 Si 0.95 47.22 27.74 68.60 1.90 49.12 16 4 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -12.03 6.52 99.48 0.65 -11.38 16 7 C -0.23 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.07 4.30 8.06 -2.91 -0.02 4.27 16 9 N -0.75 -36.41 5.40 -347.16 -1.87 -38.28 16 10 C 0.24 9.29 6.82 85.63 0.58 9.88 16 11 C -0.03 -1.12 6.61 41.60 0.28 -0.84 16 12 C -0.02 -0.45 10.84 83.37 0.90 0.46 16 13 N -0.24 -6.45 3.56 -187.04 -0.67 -7.11 16 14 C 0.09 1.78 6.67 38.07 0.25 2.04 16 15 C -0.10 -1.18 9.46 22.38 0.21 -0.97 16 16 C -0.09 -0.50 10.04 22.25 0.22 -0.28 16 17 C -0.08 -0.50 9.70 22.29 0.22 -0.29 16 18 C -0.09 -1.01 5.25 -19.88 -0.10 -1.11 16 19 C 0.16 2.10 5.80 85.64 0.50 2.60 16 20 N -0.71 -8.21 5.55 -466.79 -2.59 -10.80 16 21 C 0.54 8.80 7.61 87.66 0.67 9.46 16 22 O -0.59 -14.94 16.26 -3.05 -0.05 -14.99 16 23 C -0.20 -2.04 6.19 -11.54 -0.07 -2.11 16 24 C -0.14 -0.97 10.23 30.59 0.31 -0.66 16 25 C -0.16 -1.65 10.04 30.59 0.31 -1.34 16 26 C -0.10 -1.69 9.27 22.38 0.21 -1.48 16 27 N -0.11 -3.70 12.42 37.02 0.46 -3.24 16 28 N -0.29 -11.15 12.39 -48.59 -0.60 -11.76 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.36 17.51 5.52 -92.71 -0.51 17.00 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.24 3.82 7.13 -2.91 -0.02 3.80 16 34 H 0.16 1.16 6.79 -2.91 -0.02 1.14 16 35 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 36 H 0.16 0.18 8.06 -2.91 -0.02 0.15 16 37 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 38 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.42 2.84 8.46 -92.70 -0.78 2.05 16 40 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.08 1.30 7.67 -2.39 -0.02 1.28 16 45 H 0.12 2.65 7.70 -2.91 -0.02 2.63 16 Total: -1.00 -84.27 389.31 2.40 -81.86 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.31 Total: 17.26 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.83 Total: 0.22 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -4.97 Total: -133.47 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.05 Total: -14.99 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -84.27 2.40 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099600482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.602 kcal (2) G-P(sol) polarization free energy of solvation -84.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds