Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47102 * 274.45608 * 3 2 1 5 5 H 1.48501 * 109.47081 * 34.45278 * 3 2 1 6 6 H 1.48495 * 109.47451 * 154.45544 * 3 2 1 7 7 C 1.38820 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99397 * 164.49332 * 7 2 1 9 9 N 1.36932 * 120.00223 * 344.49837 * 7 2 1 10 10 C 1.47002 * 121.37584 * 335.97714 * 9 7 2 11 11 C 1.50324 * 109.16507 * 222.97095 * 10 9 7 12 12 C 1.29447 * 123.65210 * 349.01855 * 11 10 9 13 13 C 1.50700 * 117.69654 * 180.86305 * 12 11 10 14 14 C 1.52996 * 109.47542 * 94.99904 * 13 12 11 15 15 N 1.46491 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.34785 * 120.00128 * 179.97438 * 15 14 13 17 17 O 1.21539 * 119.99419 * 0.02562 * 16 15 14 18 18 C 1.47971 * 119.99936 * 180.02562 * 16 15 14 19 19 C 1.39731 * 119.42766 * 180.02562 * 18 16 15 20 20 C 1.36982 * 119.60253 * 180.02562 * 19 18 16 21 21 C 1.39902 * 118.35890 * 359.97438 * 20 19 18 22 22 N 1.35432 * 133.81002 * 180.02562 * 21 20 19 23 23 C 1.30216 * 109.57709 * 179.97438 * 22 21 20 24 24 N 1.35994 * 110.17742 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.29653 * 180.02562 * 24 23 22 26 26 C 1.37939 * 107.41650 * 0.02562 * 24 23 22 27 27 N 1.31896 * 133.83249 * 180.35137 * 26 24 23 28 28 C 1.49968 * 124.61050 * 1.14029 * 12 11 10 29 29 C 1.47343 * 121.37531 * 155.99755 * 9 7 2 30 30 H 0.96999 * 120.00111 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.52191 * 103.06007 * 10 9 7 32 32 H 1.09002 * 109.52028 * 342.87320 * 10 9 7 33 33 H 1.08002 * 118.17336 * 168.99983 * 11 10 9 34 34 H 1.08999 * 109.46882 * 215.00349 * 13 12 11 35 35 H 1.09006 * 109.46976 * 334.99453 * 13 12 11 36 36 H 1.08998 * 109.46885 * 300.00253 * 14 13 12 37 37 H 1.08997 * 109.46733 * 60.00305 * 14 13 12 38 38 H 0.97002 * 120.00454 * 0.02562 * 15 14 13 39 39 H 1.07998 * 120.19767 * 359.97245 * 19 18 16 40 40 H 1.08005 * 120.82243 * 180.02562 * 20 19 18 41 41 H 1.07994 * 124.91100 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.31393 * 101.00852 * 28 12 11 43 43 H 1.09000 * 109.31539 * 220.43525 * 28 12 11 44 44 H 1.08995 * 109.77607 * 237.78902 * 29 9 7 45 45 H 1.09001 * 109.77788 * 358.59810 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1007 -1.3959 5 1 1.4979 2.6236 0.7921 6 1 3.5916 1.4148 0.6037 7 6 2.0102 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2495 9 7 1.3629 -2.3664 0.3180 10 6 0.1447 -2.3649 1.1407 11 6 0.2252 -3.4818 2.1437 12 6 1.1208 -4.4156 2.1070 13 6 1.0646 -5.4821 3.1703 14 6 0.2877 -6.6894 2.6412 15 7 0.2326 -7.7258 3.6750 16 6 -0.4063 -8.8873 3.4314 17 8 -0.9363 -9.0749 2.3539 18 6 -0.4625 -9.9340 4.4759 19 6 -1.1276 -11.1338 4.2104 20 6 -1.1822 -12.1050 5.1749 21 6 -0.5622 -11.8564 6.4041 22 7 -0.4244 -12.5711 7.5462 23 6 0.2542 -11.8784 8.4152 24 7 0.5978 -10.6726 7.8886 25 1 1.1047 -9.9752 8.3332 26 6 0.0932 -10.6234 6.6058 27 7 0.1251 -9.7196 5.6456 28 6 2.2141 -4.5077 1.0846 29 6 1.8590 -3.6723 -0.1505 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7264 -2.5110 0.5019 32 1 0.0590 -1.4120 1.6628 33 1 -0.5048 -3.5062 2.9393 34 1 2.0775 -5.7881 3.4318 35 1 0.5645 -5.0874 4.0548 36 1 -0.7252 -6.3833 2.3796 37 1 0.7879 -7.0840 1.7568 38 1 0.6552 -7.5760 4.5351 39 1 -1.5964 -11.2942 3.2508 40 1 -1.6906 -13.0399 4.9906 41 1 0.5074 -12.2130 9.4103 42 1 3.1445 -4.1403 1.5176 43 1 2.3439 -5.5486 0.7884 44 1 1.0845 -4.1746 -0.7301 45 1 2.7474 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160486880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 89.996512 kcal Electronic energy + Delta-G solvation = -27701.935455 eV Core-core repulsion = 23721.218403 eV Total energy + Delta-G solvation = -3980.717052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.87566 -40.19934 -38.35479 -37.78573 -35.49666 -34.30170 -33.54255 -31.84075 -31.38394 -30.53223 -29.77714 -28.60177 -25.82205 -24.86749 -23.79436 -22.94310 -22.42590 -22.16314 -21.08123 -20.82213 -19.16028 -18.39831 -17.67137 -17.56500 -16.31795 -16.27831 -15.71494 -15.54416 -15.40652 -15.14304 -14.96491 -14.32070 -14.14805 -14.01138 -13.69586 -13.55942 -13.38060 -13.21825 -12.89531 -12.58491 -12.19227 -11.98662 -11.77810 -11.63568 -11.55937 -11.39965 -10.99616 -10.90371 -10.70943 -10.53440 -10.29556 -10.20085 -9.79964 -9.75734 -9.52148 -9.45237 -9.23984 -8.98957 -8.63426 -7.90202 -6.69981 -5.76687 -3.15073 -0.04787 0.72988 1.92631 2.00526 2.63449 2.77569 3.08647 3.38791 3.45666 3.47339 3.48053 3.50381 3.80132 4.07225 4.48526 4.51513 4.54548 4.60411 5.09950 5.12818 5.18985 5.23982 5.30277 5.42036 5.55108 5.56192 5.59056 5.66453 5.81340 6.01511 6.02665 6.06256 6.16931 6.23726 6.31902 6.41940 6.46862 6.58236 6.81522 6.93575 7.05756 7.11412 7.26044 7.34512 7.40084 7.44430 7.77296 7.90759 7.98590 8.41481 9.22931 9.85955 10.44735 11.33734 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.001718 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.041642 B =16293.906795 C =16760.235802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.091 4.091 14 C 0.122 3.878 15 N -0.708 5.708 16 C 0.570 3.430 17 O -0.526 6.526 18 C 0.124 3.876 19 C -0.123 4.123 20 C -0.026 4.026 21 C 0.022 3.978 22 N -0.491 5.491 23 C 0.287 3.713 24 N -0.588 5.588 25 H 0.432 0.568 26 C 0.234 3.766 27 N -0.454 5.454 28 C -0.091 4.091 29 C 0.143 3.857 30 H 0.253 0.747 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.408 0.592 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.228 0.772 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.025 0.975 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -24.525 18.198 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.166 4.166 12 C -0.143 4.143 13 C -0.129 4.129 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.354 3.646 17 O -0.401 6.401 18 C -0.025 4.025 19 C -0.147 4.147 20 C -0.053 4.053 21 C -0.099 4.099 22 N -0.211 5.211 23 C -0.001 4.001 24 N -0.203 5.203 25 H 0.272 0.728 26 C -0.004 4.004 27 N -0.170 5.170 28 C -0.130 4.130 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.244 0.756 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.042 -24.518 17.650 30.211 hybrid contribution 0.807 1.336 0.746 1.730 sum 0.849 -23.183 18.396 29.607 Atomic orbital electron populations 1.70021 1.05159 1.25397 1.54893 1.24990 0.95387 0.98259 1.01405 0.86251 0.79072 0.83729 0.77567 1.21516 1.21619 1.20538 1.19183 0.92194 0.84418 1.41580 0.91435 1.44133 1.29290 1.01142 1.57319 1.19707 0.88651 0.94762 0.89759 1.23124 0.96678 0.97358 0.99399 1.20219 0.99334 0.96570 0.98197 1.20907 1.00036 0.94073 0.97914 1.21543 1.01537 0.86629 0.90380 1.45966 1.55148 1.15809 1.18935 1.17696 0.79255 0.81681 0.85981 1.90835 1.45963 1.79389 1.23932 1.20977 0.96401 0.94882 0.90239 1.21612 0.99476 0.92316 1.01289 1.20501 0.95955 0.99854 0.89001 1.19903 1.02048 0.92592 0.95359 1.70472 1.19460 1.30746 1.00431 1.25602 0.93909 0.80690 0.99888 1.42901 1.47836 1.18433 1.11087 0.72788 1.18860 0.99966 0.93783 0.87764 1.66184 1.19209 1.31971 0.99643 1.20795 0.96539 0.99029 0.96659 1.20994 0.97326 0.87223 0.92838 0.93669 0.94388 0.89171 0.89063 0.91420 0.91495 0.90883 0.90864 0.75609 0.82254 0.83154 0.75596 0.91937 0.92877 0.95747 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 11.08 55.49 0.61 -25.88 16 2 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 3 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.77 9.71 -15.06 -0.15 -6.91 16 8 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 9 N -0.60 -15.16 3.01 -173.56 -0.52 -15.68 16 10 C 0.20 4.75 5.23 -5.10 -0.03 4.73 16 11 C -0.15 -2.83 9.47 -35.78 -0.34 -3.17 16 12 C -0.14 -2.46 5.11 -100.99 -0.52 -2.97 16 13 C -0.09 -1.20 5.32 -27.88 -0.15 -1.35 16 14 C 0.12 1.59 5.66 -4.05 -0.02 1.57 16 15 N -0.71 -8.25 5.54 -61.22 -0.34 -8.59 16 16 C 0.57 7.34 7.80 -12.27 -0.10 7.25 16 17 O -0.53 -8.28 16.29 5.33 0.09 -8.19 16 18 C 0.12 1.36 6.74 -82.97 -0.56 0.80 16 19 C -0.12 -1.16 9.55 -39.48 -0.38 -1.53 16 20 C -0.03 -0.22 10.16 -39.41 -0.40 -0.62 16 21 C 0.02 0.21 7.25 -84.58 -0.61 -0.40 16 22 N -0.49 -4.12 11.27 -11.93 -0.13 -4.26 16 23 C 0.29 1.25 12.96 -89.74 -1.16 0.08 16 24 N -0.59 -2.98 6.22 -13.21 -0.08 -3.06 16 25 H 0.43 0.87 8.96 -40.82 -0.37 0.50 16 26 C 0.23 2.14 8.46 -155.73 -1.32 0.82 16 27 N -0.45 -4.67 9.54 -8.82 -0.08 -4.76 16 28 C -0.09 -1.62 5.95 -28.09 -0.17 -1.78 16 29 C 0.14 3.03 6.59 -3.43 -0.02 3.01 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 33 H 0.09 1.57 7.73 -52.49 -0.41 1.17 16 34 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.07 0.83 7.78 -51.93 -0.40 0.42 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.41 4.06 7.78 -40.82 -0.32 3.74 16 39 H 0.16 1.33 7.61 -52.49 -0.40 0.94 16 40 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.23 -0.22 8.06 -52.49 -0.42 -0.64 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 LS Contribution 378.24 15.07 5.70 5.70 Total: -1.00 -35.20 378.24 -11.78 -46.98 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.99 Total: 1.57 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -6.00 Total: -0.65 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.55 Total: -62.23 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.20 -11.78 -46.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160486880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.975 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds