Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47357 * 240.00400 * 3 2 1 5 5 H 1.48501 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47203 * 120.00198 * 3 2 1 7 7 C 1.38803 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00486 * 164.51819 * 7 2 1 9 9 N 1.36947 * 120.00017 * 344.52126 * 7 2 1 10 10 C 1.47003 * 121.37171 * 335.96410 * 9 7 2 11 11 C 1.50316 * 109.16840 * 222.96668 * 10 9 7 12 12 C 1.29453 * 123.65196 * 349.03056 * 11 10 9 13 13 C 1.50697 * 117.69827 * 180.85071 * 12 11 10 14 14 C 1.53007 * 109.47009 * 94.99617 * 13 12 11 15 15 N 1.46501 * 109.47326 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99916 * 180.02562 * 15 14 13 17 17 O 1.21628 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.47202 * 119.99644 * 180.02562 * 16 15 14 19 19 C 1.37759 * 119.93680 * 179.87786 * 18 16 15 20 20 C 1.39858 * 119.92722 * 179.68037 * 19 18 16 21 21 C 1.36308 * 119.82113 * 0.22004 * 20 19 18 22 22 C 1.40768 * 119.70941 * 359.97438 * 21 20 19 23 23 N 1.32818 * 132.74410 * 180.02562 * 22 21 20 24 24 C 1.32373 * 109.74201 * 179.97438 * 23 22 21 25 25 N 1.31389 * 109.62076 * 0.02562 * 24 23 22 26 26 N 1.36550 * 119.87542 * 359.97438 * 22 21 20 27 27 C 1.49968 * 124.61035 * 1.13198 * 12 11 10 28 28 C 1.47336 * 121.37431 * 155.99196 * 9 7 2 29 29 H 0.97006 * 119.99822 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.51628 * 103.06411 * 10 9 7 31 31 H 1.09001 * 109.52295 * 342.88090 * 10 9 7 32 32 H 1.07998 * 118.17878 * 169.00073 * 11 10 9 33 33 H 1.09005 * 109.47220 * 335.00526 * 13 12 11 34 34 H 1.08998 * 109.47781 * 214.99817 * 13 12 11 35 35 H 1.09005 * 109.46388 * 60.00399 * 14 13 12 36 36 H 1.08998 * 109.47012 * 300.00671 * 14 13 12 37 37 H 0.96999 * 119.99770 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.03723 * 359.92570 * 19 18 16 39 39 H 1.08006 * 120.09179 * 180.23854 * 20 19 18 40 40 H 1.08004 * 120.14192 * 179.97438 * 21 20 19 41 41 H 1.08007 * 125.18786 * 179.97438 * 24 23 22 42 42 H 1.09009 * 109.31345 * 101.00930 * 27 12 11 43 43 H 1.08997 * 109.31906 * 220.43480 * 27 12 11 44 44 H 1.09004 * 109.77814 * 237.78855 * 28 9 7 45 45 H 1.08998 * 109.78240 * 358.59279 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0608 -1.2190 -0.2502 9 7 1.3628 -2.3667 0.3155 10 6 0.1444 -2.3661 1.1380 11 6 0.2245 -3.4840 2.1396 12 6 1.1201 -4.4179 2.1021 13 6 1.0637 -5.4856 3.1642 14 6 0.2868 -6.6922 2.6336 15 7 0.2325 -7.7304 3.6658 16 6 -0.4054 -8.8920 3.4203 17 8 -0.9355 -9.0785 2.3416 18 6 -0.4605 -9.9349 4.4576 19 6 -1.1150 -11.1207 4.2063 20 6 -1.1614 -12.1141 5.1896 21 6 -0.5621 -11.9028 6.3955 22 6 0.1000 -10.6852 6.6416 23 7 0.7563 -10.2128 7.6953 24 6 1.2067 -8.9961 7.4330 25 7 0.8577 -8.6496 6.2146 26 7 0.1388 -9.7240 5.6725 27 6 2.2136 -4.5089 1.0799 28 6 1.8589 -3.6720 -0.1544 29 1 -0.4850 0.8401 0.0004 30 1 -0.7265 -2.5114 0.4988 31 1 0.0585 -1.4137 1.6611 32 1 -0.5056 -3.5094 2.9350 33 1 0.5633 -5.0919 4.0490 34 1 2.0765 -5.7920 3.4257 35 1 0.7872 -7.0859 1.7488 36 1 -0.7260 -6.3858 2.3721 37 1 0.6555 -7.5817 4.5259 38 1 -1.5883 -11.2847 3.2495 39 1 -1.6705 -13.0464 4.9940 40 1 -0.5952 -12.6662 7.1588 41 1 1.7738 -8.3815 8.1165 42 1 3.1440 -4.1420 1.5135 43 1 2.3436 -5.5495 0.7825 44 1 1.0846 -4.1737 -0.7348 45 1 2.7475 -3.5293 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160617014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 129.924717 kcal Electronic energy + Delta-G solvation = -28309.866639 eV Core-core repulsion = 24330.881004 eV Total energy + Delta-G solvation = -3978.985635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.24271 -40.12578 -38.20435 -37.77461 -35.57537 -34.36698 -33.42796 -31.50699 -31.38435 -30.53747 -29.83021 -28.75800 -25.96450 -24.84496 -24.00867 -23.45541 -22.76745 -22.21215 -21.19333 -20.73793 -18.62451 -18.06288 -17.58541 -17.18764 -16.86086 -16.32192 -16.25416 -15.70368 -15.49684 -15.00549 -14.68819 -14.44251 -14.13168 -13.98210 -13.60111 -13.49528 -13.34779 -13.23436 -12.72523 -12.57552 -12.26209 -12.19583 -11.98675 -11.77254 -11.57671 -11.41700 -11.02513 -10.92130 -10.79894 -10.70880 -10.44364 -10.31316 -10.18791 -10.15700 -9.79926 -9.54145 -9.29892 -8.85720 -8.63645 -7.91300 -6.70854 -5.76876 -3.15663 -0.33995 0.35142 1.39775 1.90478 2.51474 2.62016 2.94653 2.99897 3.38659 3.40066 3.45437 3.46743 3.56135 4.14773 4.21752 4.30379 4.51312 4.58511 4.80303 5.07156 5.10094 5.20573 5.28101 5.35526 5.41335 5.55270 5.56341 5.62681 5.63903 5.76268 5.84158 5.99845 6.01734 6.02333 6.14387 6.22196 6.26505 6.40519 6.57189 6.80371 6.92285 7.18741 7.25249 7.34393 7.39505 7.42605 7.76527 7.81039 7.89806 8.41194 9.22497 9.85404 10.44100 11.33474 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.001969 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.766812 B =14219.432697 C =14815.017752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.197 3.803 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.091 4.091 14 C 0.122 3.878 15 N -0.709 5.709 16 C 0.555 3.445 17 O -0.521 6.521 18 C 0.091 3.909 19 C -0.080 4.080 20 C -0.069 4.069 21 C -0.081 4.081 22 C 0.278 3.722 23 N -0.540 5.540 24 C 0.250 3.750 25 N -0.352 5.352 26 N -0.275 5.275 27 C -0.091 4.091 28 C 0.143 3.857 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.231 0.769 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.024 0.976 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -25.942 14.349 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.072 3.928 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.129 4.129 14 C -0.001 4.001 15 N -0.365 5.365 16 C 0.339 3.661 17 O -0.398 6.398 18 C -0.021 4.021 19 C -0.103 4.103 20 C -0.095 4.095 21 C -0.103 4.103 22 C 0.025 3.975 23 N -0.270 5.270 24 C -0.050 4.050 25 N -0.184 5.184 26 N -0.053 5.053 27 C -0.130 4.130 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.257 0.743 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.181 0.819 41 H 0.247 0.753 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.912 -25.208 13.657 28.734 hybrid contribution 0.538 0.879 0.559 1.173 sum -1.374 -24.329 14.216 28.212 Atomic orbital electron populations 1.70011 1.05156 1.25555 1.54775 1.24991 0.95402 0.98276 1.01340 0.86321 0.78803 0.83307 0.78059 1.20937 1.21644 1.21127 1.19141 0.92177 0.84398 1.41756 0.91457 1.44130 1.29275 1.01164 1.57319 1.19704 0.88647 0.94728 0.89750 1.23133 0.96670 0.97344 0.99386 1.20211 0.99350 0.96547 0.98168 1.20897 1.00079 0.93944 0.97945 1.21574 1.01623 0.86631 0.90277 1.46461 1.54514 1.15457 1.20051 1.17500 0.80307 0.82074 0.86260 1.90885 1.46109 1.79448 1.23335 1.20688 0.99453 0.98007 0.83936 1.21568 0.96966 0.89754 1.02014 1.21319 0.96792 0.99805 0.91535 1.20576 0.96935 0.93714 0.99058 1.21870 0.97845 0.92336 0.85462 1.70873 1.19588 1.11665 1.24831 1.26218 0.95444 0.91587 0.91702 1.77995 1.19951 1.06977 1.13496 1.47901 1.33669 1.12800 1.10887 1.20799 0.96567 0.98995 0.96669 1.20989 0.97321 0.87216 0.92802 0.93591 0.94390 0.89140 0.89076 0.91450 0.91375 0.90788 0.90791 0.74324 0.80636 0.82056 0.81867 0.75253 0.91881 0.92946 0.95783 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.59 11.08 55.49 0.61 -25.98 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 3 Si 0.91 21.95 29.58 -169.99 -5.03 16.92 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.83 9.71 -15.06 -0.15 -6.97 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.60 -15.27 3.01 -173.57 -0.52 -15.79 16 10 C 0.20 4.80 5.23 -5.11 -0.03 4.77 16 11 C -0.15 -2.88 9.47 -35.78 -0.34 -3.22 16 12 C -0.14 -2.51 5.11 -100.99 -0.52 -3.03 16 13 C -0.09 -1.27 5.32 -27.88 -0.15 -1.42 16 14 C 0.12 1.68 5.66 -4.04 -0.02 1.65 16 15 N -0.71 -9.07 5.55 -61.45 -0.34 -9.42 16 16 C 0.56 7.15 7.78 -12.62 -0.10 7.05 16 17 O -0.52 -7.90 16.29 5.25 0.09 -7.81 16 18 C 0.09 0.92 6.80 -82.05 -0.56 0.36 16 19 C -0.08 -0.53 9.58 -39.15 -0.38 -0.90 16 20 C -0.07 -0.27 10.04 -39.67 -0.40 -0.66 16 21 C -0.08 -0.44 10.09 -39.32 -0.40 -0.84 16 22 C 0.28 2.58 7.88 -156.38 -1.23 1.35 16 23 N -0.54 -5.43 11.24 -13.99 -0.16 -5.59 16 24 C 0.25 2.23 12.98 -92.00 -1.19 1.03 16 25 N -0.35 -3.77 9.98 29.25 0.29 -3.47 16 26 N -0.28 -2.89 3.92 -8.82 -0.03 -2.92 16 27 C -0.09 -1.64 5.95 -28.09 -0.17 -1.81 16 28 C 0.14 3.07 6.59 -3.44 -0.02 3.04 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 32 H 0.09 1.61 7.73 -52.49 -0.41 1.20 16 33 H 0.07 0.91 7.78 -51.93 -0.40 0.50 16 34 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.42 5.03 5.42 -40.82 -0.22 4.81 16 38 H 0.18 0.94 7.59 -52.49 -0.40 0.55 16 39 H 0.16 0.00 8.06 -52.48 -0.42 -0.42 16 40 H 0.16 0.44 8.06 -52.48 -0.42 0.02 16 41 H 0.23 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -34.51 375.30 -11.11 -45.62 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.95 Total: 2.52 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -5.73 Total: 0.26 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.15 Total: -63.17 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.51 -11.11 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160617014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.543 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds