Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47357 * 240.00400 * 3 2 1 5 5 H 1.48501 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47203 * 120.00198 * 3 2 1 7 7 C 1.38803 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00486 * 164.51819 * 7 2 1 9 9 N 1.36947 * 120.00017 * 344.52126 * 7 2 1 10 10 C 1.47003 * 121.37171 * 335.96410 * 9 7 2 11 11 C 1.50316 * 109.16840 * 222.96668 * 10 9 7 12 12 C 1.29453 * 123.65196 * 349.03056 * 11 10 9 13 13 C 1.50697 * 117.69827 * 180.85071 * 12 11 10 14 14 C 1.53007 * 109.47009 * 94.99617 * 13 12 11 15 15 N 1.46501 * 109.47326 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99916 * 180.02562 * 15 14 13 17 17 O 1.21628 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.47202 * 119.99644 * 180.02562 * 16 15 14 19 19 C 1.37759 * 119.93680 * 179.87786 * 18 16 15 20 20 C 1.39858 * 119.92722 * 179.68037 * 19 18 16 21 21 C 1.36308 * 119.82113 * 0.22004 * 20 19 18 22 22 C 1.40768 * 119.70941 * 359.97438 * 21 20 19 23 23 N 1.32818 * 132.74410 * 180.02562 * 22 21 20 24 24 C 1.32373 * 109.74201 * 179.97438 * 23 22 21 25 25 N 1.31389 * 109.62076 * 0.02562 * 24 23 22 26 26 N 1.36550 * 119.87542 * 359.97438 * 22 21 20 27 27 C 1.49968 * 124.61035 * 1.13198 * 12 11 10 28 28 C 1.47336 * 121.37431 * 155.99196 * 9 7 2 29 29 H 0.97006 * 119.99822 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.51628 * 103.06411 * 10 9 7 31 31 H 1.09001 * 109.52295 * 342.88090 * 10 9 7 32 32 H 1.07998 * 118.17878 * 169.00073 * 11 10 9 33 33 H 1.09005 * 109.47220 * 335.00526 * 13 12 11 34 34 H 1.08998 * 109.47781 * 214.99817 * 13 12 11 35 35 H 1.09005 * 109.46388 * 60.00399 * 14 13 12 36 36 H 1.08998 * 109.47012 * 300.00671 * 14 13 12 37 37 H 0.96999 * 119.99770 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.03723 * 359.92570 * 19 18 16 39 39 H 1.08006 * 120.09179 * 180.23854 * 20 19 18 40 40 H 1.08004 * 120.14192 * 179.97438 * 21 20 19 41 41 H 1.08007 * 125.18786 * 179.97438 * 24 23 22 42 42 H 1.09009 * 109.31345 * 101.00930 * 27 12 11 43 43 H 1.08997 * 109.31906 * 220.43480 * 27 12 11 44 44 H 1.09004 * 109.77814 * 237.78855 * 28 9 7 45 45 H 1.08998 * 109.78240 * 358.59279 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0608 -1.2190 -0.2502 9 7 1.3628 -2.3667 0.3155 10 6 0.1444 -2.3661 1.1380 11 6 0.2245 -3.4840 2.1396 12 6 1.1201 -4.4179 2.1021 13 6 1.0637 -5.4856 3.1642 14 6 0.2868 -6.6922 2.6336 15 7 0.2325 -7.7304 3.6658 16 6 -0.4054 -8.8920 3.4203 17 8 -0.9355 -9.0785 2.3416 18 6 -0.4605 -9.9349 4.4576 19 6 -1.1150 -11.1207 4.2063 20 6 -1.1614 -12.1141 5.1896 21 6 -0.5621 -11.9028 6.3955 22 6 0.1000 -10.6852 6.6416 23 7 0.7563 -10.2128 7.6953 24 6 1.2067 -8.9961 7.4330 25 7 0.8577 -8.6496 6.2146 26 7 0.1388 -9.7240 5.6725 27 6 2.2136 -4.5089 1.0799 28 6 1.8589 -3.6720 -0.1544 29 1 -0.4850 0.8401 0.0004 30 1 -0.7265 -2.5114 0.4988 31 1 0.0585 -1.4137 1.6611 32 1 -0.5056 -3.5094 2.9350 33 1 0.5633 -5.0919 4.0490 34 1 2.0765 -5.7920 3.4257 35 1 0.7872 -7.0859 1.7488 36 1 -0.7260 -6.3858 2.3721 37 1 0.6555 -7.5817 4.5259 38 1 -1.5883 -11.2847 3.2495 39 1 -1.6705 -13.0464 4.9940 40 1 -0.5952 -12.6662 7.1588 41 1 1.7738 -8.3815 8.1165 42 1 3.1440 -4.1420 1.5135 43 1 2.3436 -5.5495 0.7825 44 1 1.0846 -4.1737 -0.7348 45 1 2.7475 -3.5293 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160617014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = 109.309336 kcal Electronic energy + Delta-G solvation = -28310.760589 eV Core-core repulsion = 24330.881004 eV Total energy + Delta-G solvation = -3979.879585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.84755 -41.05607 -39.55840 -38.62533 -36.86990 -35.40766 -34.63486 -33.14536 -32.08444 -31.54632 -31.18531 -30.21228 -27.40973 -25.92947 -24.71339 -24.58143 -24.18563 -23.35226 -22.50693 -21.88045 -19.52168 -19.31798 -18.67212 -17.81899 -17.65017 -17.54731 -17.09955 -16.88324 -16.75692 -16.55020 -15.82466 -15.52898 -15.40195 -15.22669 -15.10093 -15.00758 -14.35098 -14.00631 -13.92569 -13.64948 -13.45696 -13.30532 -13.19676 -12.93119 -12.79993 -12.78561 -12.59434 -12.44142 -12.32033 -12.22984 -11.97321 -11.71701 -11.62476 -11.27336 -11.16202 -10.74343 -10.69094 -10.34056 -9.54251 -9.46270 -8.76863 -7.89201 -5.31527 -0.90956 -0.17622 0.80470 1.23426 1.34491 1.45461 1.48473 1.55128 1.77935 1.87542 2.33236 2.50041 2.81150 2.98662 3.27297 3.48979 3.64694 3.77094 3.88056 3.89699 3.98760 4.01358 4.06146 4.21888 4.36578 4.49642 4.52203 4.61513 4.77522 4.80820 4.83668 4.91100 4.93281 4.97890 5.04557 5.12459 5.16926 5.20547 5.22175 5.26723 5.38654 5.47321 5.47622 5.59216 5.82917 6.22146 6.26607 6.32239 6.75529 6.87139 7.11613 7.81594 8.36663 9.19339 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.001969 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.766812 B =14219.432697 C =14815.017752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.208 3.792 11 C -0.172 4.172 12 C -0.119 4.119 13 C -0.078 4.078 14 C 0.129 3.871 15 N -0.709 5.709 16 C 0.553 3.447 17 O -0.554 6.554 18 C 0.048 3.952 19 C -0.055 4.055 20 C -0.050 4.050 21 C -0.074 4.074 22 C 0.259 3.741 23 N -0.562 5.562 24 C 0.247 3.753 25 N -0.383 5.383 26 N -0.284 5.284 27 C -0.087 4.087 28 C 0.136 3.864 29 H 0.250 0.750 30 H 0.005 0.995 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.419 0.581 38 H 0.188 0.812 39 H 0.212 0.788 40 H 0.195 0.805 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.020 0.980 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -29.036 15.859 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.082 3.918 11 C -0.191 4.191 12 C -0.119 4.119 13 C -0.116 4.116 14 C 0.006 3.994 15 N -0.365 5.365 16 C 0.339 3.661 17 O -0.433 6.433 18 C -0.062 4.062 19 C -0.078 4.078 20 C -0.075 4.075 21 C -0.095 4.095 22 C 0.007 3.993 23 N -0.292 5.292 24 C -0.053 4.053 25 N -0.216 5.216 26 N -0.061 5.061 27 C -0.126 4.126 28 C 0.011 3.989 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.262 0.738 38 H 0.206 0.794 39 H 0.229 0.771 40 H 0.212 0.788 41 H 0.276 0.724 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.114 -28.338 15.180 32.167 hybrid contribution 0.282 1.649 0.067 1.674 sum -0.832 -26.689 15.247 30.748 Atomic orbital electron populations 1.70192 1.06630 1.25878 1.56087 1.25814 0.96224 1.01561 1.01618 0.85264 0.77445 0.78950 0.78340 1.19966 1.22017 1.20463 1.19506 0.92579 0.85575 1.41195 0.91084 1.44423 1.29436 1.02141 1.57950 1.19345 0.87409 0.95076 0.89925 1.22838 0.99274 0.97133 0.99858 1.20500 0.97381 0.96071 0.97987 1.20771 1.01396 0.92666 0.96766 1.21337 1.00665 0.86862 0.90538 1.46417 1.54779 1.15417 1.19896 1.17896 0.79301 0.82365 0.86546 1.90853 1.47495 1.80176 1.24800 1.20540 1.03084 0.98781 0.83834 1.22018 0.94130 0.88725 1.02976 1.21837 0.95506 1.00470 0.89735 1.21144 0.95312 0.92702 1.00343 1.22566 0.98307 0.93352 0.85121 1.70869 1.20548 1.12304 1.25529 1.26848 0.95111 0.91667 0.91646 1.77873 1.21190 1.08151 1.14407 1.47867 1.34012 1.13087 1.11108 1.20757 0.96622 1.00133 0.95055 1.21183 0.97176 0.85976 0.94560 0.94121 0.97723 0.92611 0.87120 0.90480 0.89512 0.91200 0.92208 0.73828 0.79446 0.77110 0.78802 0.72362 0.91349 0.89623 0.96154 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 11.08 21.65 0.24 -57.03 16 2 C -0.06 -3.31 5.01 84.86 0.43 -2.88 16 3 Si 0.97 45.94 29.58 68.60 2.03 47.97 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.68 9.71 84.03 0.82 -13.86 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 9 N -0.62 -32.38 3.01 -703.05 -2.11 -34.49 16 10 C 0.21 10.64 5.23 85.42 0.45 11.08 16 11 C -0.17 -6.87 9.47 27.11 0.26 -6.62 16 12 C -0.12 -4.07 5.11 -15.14 -0.08 -4.14 16 13 C -0.08 -2.06 5.32 29.85 0.16 -1.90 16 14 C 0.13 3.46 5.66 86.38 0.49 3.95 16 15 N -0.71 -17.79 5.55 -466.57 -2.59 -20.38 16 16 C 0.55 14.08 7.78 86.60 0.67 14.76 16 17 O -0.55 -16.76 16.29 -4.12 -0.07 -16.83 16 18 C 0.05 0.92 6.80 40.56 0.28 1.20 16 19 C -0.06 -0.58 9.58 22.55 0.22 -0.37 16 20 C -0.05 -0.16 10.04 22.21 0.22 0.06 16 21 C -0.07 -0.53 10.09 22.44 0.23 -0.31 16 22 C 0.26 4.35 7.88 134.16 1.06 5.41 16 23 N -0.56 -10.62 11.24 -198.17 -2.23 -12.84 16 24 C 0.25 4.18 12.98 180.83 2.35 6.53 16 25 N -0.38 -8.00 9.98 -61.37 -0.61 -8.61 16 26 N -0.28 -5.68 3.92 -181.81 -0.71 -6.39 16 27 C -0.09 -2.99 5.95 29.72 0.18 -2.82 16 28 C 0.14 5.84 6.59 86.32 0.57 6.41 16 29 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 3.19 6.41 -2.39 -0.02 3.18 16 32 H 0.11 3.93 7.73 -2.91 -0.02 3.91 16 33 H 0.08 1.93 7.78 -2.38 -0.02 1.91 16 34 H 0.09 2.02 8.11 -2.39 -0.02 2.00 16 35 H 0.07 1.93 8.11 -2.38 -0.02 1.91 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.42 9.89 5.42 -92.71 -0.50 9.39 16 38 H 0.19 1.50 7.59 -2.91 -0.02 1.48 16 39 H 0.21 -1.37 8.06 -2.91 -0.02 -1.40 16 40 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 41 H 0.26 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 44 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.06 2.50 7.96 -2.39 -0.02 2.48 16 Total: -1.00 -79.38 375.30 2.75 -76.63 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.52 Total: 15.46 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 8.28 Total: 16.51 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -8.02 Total: -139.74 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.07 Total: -16.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -79.38 2.75 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160617014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.940 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds