Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48504 * 109.46845 * 269.99920 * 3 2 1 5 5 H 1.48498 * 109.47336 * 29.99461 * 3 2 1 6 6 H 1.48495 * 109.47302 * 149.99989 * 3 2 1 7 7 C 1.39865 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00368 * 163.32324 * 7 2 1 9 9 C 1.41201 * 120.00026 * 343.33316 * 7 2 1 10 10 C 1.41327 * 120.56991 * 335.71226 * 9 7 2 11 11 C 1.36562 * 118.41056 * 179.97438 * 10 9 7 12 12 C 1.39707 * 119.49369 * 0.02562 * 11 10 9 13 13 N 1.38369 * 119.43136 * 179.97438 * 12 11 10 14 14 C 1.46502 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.50706 * 109.47132 * 180.02562 * 14 13 12 16 16 C 1.38814 * 119.99261 * 94.97484 * 15 14 13 17 17 C 1.38555 * 118.04032 * 180.02562 * 16 15 14 18 18 C 1.39478 * 117.90368 * 0.02562 * 17 16 15 19 19 N 1.39051 * 120.15830 * 179.97438 * 18 17 16 20 20 C 1.47013 * 110.99703 * 303.65368 * 19 18 17 21 21 C 1.53103 * 109.25558 * 177.60907 * 20 19 18 22 22 O 1.43013 * 109.26033 * 56.84860 * 21 20 19 23 23 C 1.43020 * 113.73835 * 301.33290 * 22 21 20 24 24 C 1.47016 * 111.00059 * 180.02562 * 19 18 17 25 25 N 1.32489 * 119.68776 * 359.97438 * 18 17 16 26 26 N 1.28354 * 122.06837 * 0.02562 * 25 18 17 27 27 N 1.32736 * 121.13506 * 0.27152 * 12 11 10 28 28 C 1.31485 * 121.73398 * 359.43459 * 27 12 11 29 29 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.79534 * 359.96016 * 10 9 7 31 31 H 1.08003 * 120.25450 * 180.02562 * 11 10 9 32 32 H 0.96996 * 120.00367 * 179.97438 * 13 12 11 33 33 H 1.08998 * 109.47591 * 60.00315 * 14 13 12 34 34 H 1.09005 * 109.47388 * 299.99955 * 14 13 12 35 35 H 1.08004 * 120.98156 * 0.02562 * 16 15 14 36 36 H 1.08001 * 121.04975 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.50726 * 297.54248 * 20 19 18 38 38 H 1.08996 * 109.50800 * 57.67432 * 20 19 18 39 39 H 1.08995 * 109.50334 * 296.91348 * 21 20 19 40 40 H 1.09002 * 109.54249 * 176.80476 * 21 20 19 41 41 H 1.08996 * 109.50505 * 298.73316 * 23 22 21 42 42 H 1.08999 * 109.53999 * 178.62397 * 23 22 21 43 43 H 1.09002 * 109.50457 * 302.32796 * 24 19 18 44 44 H 1.09002 * 109.50541 * 62.40934 * 24 19 18 45 45 H 1.08005 * 119.81660 * 180.31006 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.6999 6 1 3.5406 1.4402 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0543 -1.2311 -0.2678 9 6 1.3469 -2.4083 0.3518 10 6 0.1941 -2.3793 1.1688 11 6 -0.4110 -3.5631 1.4809 12 6 0.1208 -4.7579 0.9895 13 7 -0.4931 -5.9567 1.3069 14 6 -1.6898 -5.9656 2.1520 15 6 -2.1575 -7.3851 2.3455 16 6 -1.7626 -8.0989 3.4686 17 6 -2.2159 -9.4010 3.6056 18 6 -3.0412 -9.9135 2.6047 19 7 -3.5225 -11.2149 2.6945 20 6 -2.4186 -12.1771 2.8246 21 6 -2.9937 -13.5874 2.9801 22 8 -3.8370 -13.8789 1.8624 23 6 -4.9232 -12.9617 1.7061 24 6 -4.3676 -11.5451 1.5377 25 7 -3.3644 -9.1544 1.5681 26 7 -2.9407 -7.9488 1.4478 27 7 1.2081 -4.7634 0.2282 28 6 1.8244 -3.6509 -0.1054 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1988 -1.4434 1.5378 31 1 -1.2940 -3.5756 2.1028 32 1 -0.1311 -6.7911 0.9700 33 1 -2.4778 -5.3853 1.6722 34 1 -1.4536 -5.5260 3.1211 35 1 -1.1208 -7.6524 4.2138 36 1 -1.9390 -10.0003 4.4603 37 1 -1.7926 -12.1355 1.9331 38 1 -1.8210 -11.9289 3.7017 39 1 -3.5759 -13.6436 3.8998 40 1 -2.1793 -14.3109 3.0200 41 1 -5.5615 -12.9997 2.5888 42 1 -5.5045 -13.2319 0.8246 43 1 -5.1927 -10.8356 1.4754 44 1 -3.7728 -11.4927 0.6257 45 1 2.7041 -3.6910 -0.7306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169737489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 48.348736 kcal Electronic energy + Delta-G solvation = -27774.510640 eV Core-core repulsion = 23791.987605 eV Total energy + Delta-G solvation = -3982.523035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.46677 -40.60327 -40.30090 -37.62863 -36.76379 -35.50640 -34.24091 -32.84412 -32.47250 -32.31596 -30.84951 -28.85657 -27.58177 -26.38080 -25.59150 -24.50780 -24.05783 -23.30694 -22.37290 -21.76581 -19.18219 -19.04401 -18.58167 -18.41452 -17.43752 -17.10835 -16.90409 -16.63318 -16.39475 -16.23158 -15.88930 -15.79343 -15.46965 -15.35999 -15.20542 -14.90783 -14.70734 -14.43232 -14.01276 -13.73926 -13.62173 -13.45239 -13.34063 -13.02015 -12.76057 -12.68072 -12.50966 -12.25157 -12.23322 -11.87275 -11.67412 -11.64632 -11.24902 -11.23663 -10.76464 -10.68922 -10.46528 -10.16229 -9.92659 -9.62742 -8.67905 -8.42751 -6.13342 -0.26455 -0.21952 0.89746 1.12927 1.42724 1.53602 1.59603 1.99456 2.25647 2.34668 2.78148 2.82588 2.85483 3.00106 3.36016 3.56791 3.65349 3.76209 3.80765 3.86562 3.95303 4.05122 4.15614 4.20752 4.21914 4.40278 4.42906 4.50985 4.62666 4.65188 4.66743 4.73433 4.78594 4.81726 4.88292 4.94855 4.96513 5.03635 5.28888 5.41568 5.51127 5.55631 5.67223 5.86583 5.99011 6.08464 6.46454 6.57572 6.80654 6.93004 7.06998 7.62829 7.82891 8.40372 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037827 B = 0.001691 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.044101 B =16557.724711 C =16676.693355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.106 4.106 11 C -0.204 4.204 12 C 0.287 3.713 13 N -0.730 5.730 14 C 0.202 3.798 15 C 0.032 3.968 16 C -0.072 4.072 17 C -0.120 4.120 18 C 0.241 3.759 19 N -0.465 5.465 20 C 0.017 3.983 21 C 0.063 3.937 22 O -0.403 6.403 23 C 0.067 3.933 24 C 0.026 3.974 25 N -0.312 5.312 26 N -0.241 5.241 27 N -0.538 5.538 28 C -0.002 4.002 29 H 0.287 0.713 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.391 0.609 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.043 0.957 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -22.537 12.747 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.096 0.904 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.228 4.228 12 C 0.053 3.947 13 N -0.369 5.369 14 C 0.076 3.924 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.150 4.150 18 C 0.002 3.998 19 N -0.184 5.184 20 C -0.109 4.109 21 C -0.014 4.014 22 O -0.322 6.322 23 C -0.010 4.010 24 C -0.101 4.101 25 N -0.158 5.158 26 N -0.082 5.082 27 N -0.254 5.254 28 C -0.159 4.159 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.224 0.776 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.205 0.795 36 H 0.209 0.791 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.215 -23.223 11.395 27.460 hybrid contribution 1.032 1.715 0.438 2.049 sum -8.183 -21.508 11.833 25.876 Atomic orbital electron populations 1.69865 1.08859 1.30355 1.37360 1.26690 0.95502 1.04350 0.91490 0.85198 0.79087 0.76084 0.79278 1.19080 1.19224 1.18257 1.19557 0.97863 0.91865 1.42808 0.90433 1.18674 0.94423 0.94295 0.93239 1.21343 0.97363 0.97079 0.97523 1.21044 1.03012 0.92012 1.06683 1.17974 0.92252 0.86349 0.98129 1.43515 1.30369 1.04539 1.58452 1.19861 0.86835 0.89724 0.96026 1.22744 0.96744 0.98288 0.93888 1.22596 0.96609 0.93501 0.97341 1.22339 0.96543 0.96324 0.99840 1.21862 0.92565 0.93539 0.91815 1.59441 1.19857 0.98730 1.40409 1.23192 0.91431 0.92545 1.03725 1.22901 0.95126 0.93791 0.89564 1.88006 1.41615 1.52422 1.50149 1.22819 0.88762 0.85580 1.03862 1.22742 0.97784 0.99219 0.90375 1.73166 1.22310 1.00707 1.19574 1.72739 1.07573 1.03336 1.24559 1.66561 1.09825 1.32658 1.16381 1.22339 1.02187 0.87362 1.04046 0.90295 0.86399 0.85435 0.77558 0.92114 0.88563 0.79504 0.79142 0.93878 0.85892 0.90494 0.85597 0.90889 0.86492 0.89149 0.93890 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.66 10.91 21.82 0.24 -43.42 16 2 C 0.03 1.65 5.19 85.23 0.44 2.09 16 3 Si 0.98 38.15 29.59 68.60 2.03 40.18 16 4 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.49 -26.33 9.07 23.39 0.21 -26.12 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 9 C 0.00 -0.06 5.59 -21.18 -0.12 -0.18 16 10 C -0.11 -5.51 8.74 22.64 0.20 -5.31 16 11 C -0.20 -9.26 9.24 22.23 0.21 -9.06 16 12 C 0.29 12.89 7.64 133.32 1.02 13.91 16 13 N -0.73 -25.95 5.70 -348.58 -1.99 -27.94 16 14 C 0.20 5.63 5.20 85.63 0.45 6.08 16 15 C 0.03 0.81 6.23 42.70 0.27 1.07 16 16 C -0.07 -1.21 9.84 22.48 0.22 -0.98 16 17 C -0.12 -1.76 9.33 22.64 0.21 -1.54 16 18 C 0.24 4.96 6.47 133.10 0.86 5.82 16 19 N -0.47 -7.59 4.76 -700.41 -3.33 -10.93 16 20 C 0.02 0.19 5.40 86.32 0.47 0.65 16 21 C 0.06 0.58 7.01 72.02 0.50 1.08 16 22 O -0.40 -6.09 10.83 -148.98 -1.61 -7.70 16 23 C 0.07 0.85 7.01 72.01 0.50 1.36 16 24 C 0.03 0.46 4.83 86.31 0.42 0.88 16 25 N -0.31 -8.69 9.91 -55.10 -0.55 -9.24 16 26 N -0.24 -7.35 11.41 -47.57 -0.54 -7.89 16 27 N -0.54 -26.67 10.37 -191.21 -1.98 -28.65 16 28 C 0.00 -0.12 10.97 85.36 0.94 0.81 16 29 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 30 H 0.12 6.28 6.20 -2.91 -0.02 6.27 16 31 H 0.13 4.91 6.64 -2.91 -0.02 4.89 16 32 H 0.39 13.75 8.58 -92.71 -0.80 12.96 16 33 H 0.06 1.87 7.90 -2.39 -0.02 1.85 16 34 H 0.10 2.23 7.82 -2.38 -0.02 2.21 16 35 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.19 1.19 7.26 -2.91 -0.02 1.17 16 37 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.12 0.69 6.89 -2.39 -0.02 0.68 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.73 7.87 -2.39 -0.02 1.71 16 44 H 0.04 0.93 8.04 -2.39 -0.02 0.91 16 45 H 0.13 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -70.58 372.79 -0.71 -71.28 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.24 Total: 33.75 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 6.79 Total: -9.45 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -8.15 Total: -128.07 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -1.61 Total: -7.70 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -70.58 -0.71 -71.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169737489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.632 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds