Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86806 * 120.00004 * 2 1 4 4 H 1.48499 * 109.46900 * 269.99842 * 3 2 1 5 5 H 1.48493 * 109.47153 * 30.00269 * 3 2 1 6 6 H 1.48506 * 109.46910 * 150.00207 * 3 2 1 7 7 C 1.39953 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00126 * 163.95926 * 7 2 1 9 9 C 1.41012 * 120.00005 * 343.95400 * 7 2 1 10 10 C 1.41002 * 120.70592 * 334.87454 * 9 7 2 11 11 C 1.38016 * 118.28161 * 180.02562 * 10 9 7 12 12 C 1.38680 * 119.62672 * 0.27827 * 11 10 9 13 13 N 1.31980 * 121.44616 * 359.39400 * 12 11 10 14 14 C 1.32269 * 121.86471 * 0.64261 * 13 12 11 15 15 N 1.38089 * 119.90621 * 179.68001 * 14 13 12 16 16 C 1.46500 * 119.99865 * 359.97336 * 15 14 13 17 17 C 1.50699 * 109.47210 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99418 * 94.72380 * 17 16 15 19 19 C 1.38563 * 118.03713 * 179.74407 * 18 17 16 20 20 C 1.39481 * 117.90455 * 0.52220 * 19 18 17 21 21 N 1.39045 * 120.15815 * 179.71284 * 20 19 18 22 22 C 1.47018 * 110.99929 * 303.65315 * 21 20 19 23 23 C 1.53094 * 109.25946 * 177.60828 * 22 21 20 24 24 O 1.43008 * 109.25746 * 56.85162 * 23 22 21 25 25 C 1.43022 * 113.74100 * 301.32636 * 24 23 22 26 26 C 1.47018 * 111.00000 * 180.02562 * 21 20 19 27 27 N 1.32491 * 119.68533 * 359.73166 * 20 19 18 28 28 N 1.28349 * 122.07038 * 359.97438 * 27 20 19 29 29 H 0.97006 * 120.00402 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.86185 * 359.97438 * 10 9 7 31 31 H 1.07996 * 120.18890 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.27613 * 179.72112 * 12 11 10 33 33 H 0.96996 * 120.00013 * 179.97438 * 15 14 13 34 34 H 1.09001 * 109.46976 * 300.00075 * 16 15 14 35 35 H 1.08996 * 109.46969 * 60.00049 * 16 15 14 36 36 H 1.08003 * 120.97804 * 359.97438 * 18 17 16 37 37 H 1.07995 * 121.04579 * 180.25347 * 19 18 17 38 38 H 1.08996 * 109.50943 * 297.54891 * 22 21 20 39 39 H 1.09003 * 109.50041 * 57.67429 * 22 21 20 40 40 H 1.09004 * 109.50533 * 296.91504 * 23 22 21 41 41 H 1.09005 * 109.54229 * 176.80852 * 23 22 21 42 42 H 1.08990 * 109.50721 * 298.74081 * 25 24 23 43 43 H 1.08993 * 109.54334 * 178.62978 * 25 24 23 44 44 H 1.09000 * 109.50192 * 302.32342 * 26 21 20 45 45 H 1.09003 * 109.50453 * 62.41213 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4401 0.7000 7 6 2.0084 -1.2120 -0.0005 8 1 3.0569 -1.2302 -0.2590 9 6 1.3445 -2.4096 0.3365 10 6 0.1967 -2.3907 1.1552 11 6 -0.4132 -3.5922 1.4541 12 6 0.1149 -4.7725 0.9529 13 7 1.1865 -4.7748 0.1824 14 6 1.8171 -3.6577 -0.1401 15 7 2.9388 -3.7078 -0.9439 16 6 3.4292 -4.9970 -1.4377 17 6 4.6558 -4.7768 -2.2849 18 6 5.9187 -4.8824 -1.7184 19 6 7.0185 -4.6772 -2.5359 20 6 6.7870 -4.3661 -3.8757 21 7 7.8564 -4.1450 -4.7363 22 6 8.7281 -3.0751 -4.2295 23 6 9.9212 -2.9059 -5.1738 24 8 9.4430 -2.6347 -6.4940 25 6 8.5914 -3.6567 -7.0192 26 6 7.3848 -3.8335 -6.0935 27 7 5.5432 -4.2820 -4.3243 28 7 4.5292 -4.4790 -3.5625 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1946 -1.4602 1.5393 31 1 -1.2939 -3.6135 2.0788 32 1 -0.3643 -5.7098 1.1940 33 1 3.4020 -2.8894 -1.1816 34 1 3.6819 -5.6374 -0.5926 35 1 2.6543 -5.4751 -2.0368 36 1 6.0404 -5.1212 -0.6721 37 1 8.0232 -4.7514 -2.1468 38 1 8.1676 -2.1416 -4.1802 39 1 9.0862 -3.3384 -3.2342 40 1 10.5120 -3.8219 -5.1816 41 1 10.5407 -2.0761 -4.8335 42 1 9.1434 -4.5944 -7.0807 43 1 8.2486 -3.3704 -8.0134 44 1 6.7623 -4.6503 -6.4589 45 1 6.8022 -2.9124 -6.0739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169737934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = 67.603874 kcal Electronic energy + Delta-G solvation = -28553.311105 eV Core-core repulsion = 24571.623036 eV Total energy + Delta-G solvation = -3981.688069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46705 -39.74946 -38.47356 -36.62039 -34.98901 -33.97359 -33.23879 -31.75409 -31.64633 -30.40931 -29.09883 -27.56729 -26.07987 -25.33283 -24.72955 -23.68000 -22.59503 -21.32729 -21.02908 -20.57282 -18.18367 -17.60500 -17.27084 -16.92784 -16.43894 -15.91783 -15.68935 -15.60287 -15.34535 -15.18618 -14.93316 -14.66657 -14.18632 -13.92253 -13.82691 -13.58278 -13.27972 -12.92231 -12.77131 -12.57619 -12.07887 -11.96016 -11.91358 -11.82981 -11.45860 -11.34676 -11.27268 -10.98156 -10.90843 -10.83819 -10.56337 -10.28062 -10.03739 -9.80760 -9.66302 -9.32282 -9.01290 -8.69643 -8.10085 -7.92376 -6.82450 -6.54620 -4.25839 0.74017 0.77596 2.72938 2.90399 3.04335 3.06331 3.09403 3.22446 3.41961 3.45628 3.90368 3.99376 4.30066 4.41280 4.43910 4.50587 4.57559 4.62931 4.69352 4.71227 4.78473 4.89766 4.97894 5.07651 5.21099 5.31577 5.42487 5.49946 5.56369 5.63118 5.73514 5.87373 6.03819 6.10147 6.23190 6.39314 6.44271 6.57354 6.68361 6.75038 6.84668 7.09908 7.15607 7.62463 7.79080 7.97874 8.23622 8.44160 8.62720 8.70663 8.76790 8.96152 9.74400 10.18948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.002759 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.676294 B =10144.953361 C =11813.569580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.072 0.928 9 C 0.035 3.965 10 C -0.125 4.125 11 C -0.189 4.189 12 C 0.002 3.998 13 N -0.531 5.531 14 C 0.304 3.696 15 N -0.724 5.724 16 C 0.203 3.797 17 C 0.044 3.956 18 C -0.080 4.080 19 C -0.134 4.134 20 C 0.243 3.757 21 N -0.469 5.469 22 C 0.018 3.982 23 C 0.065 3.935 24 O -0.383 6.383 25 C 0.062 3.938 26 C 0.024 3.976 27 N -0.279 5.279 28 N -0.200 5.200 29 H 0.280 0.720 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.403 0.597 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.123 -5.409 -6.892 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.028 3.972 10 C -0.152 4.152 11 C -0.212 4.212 12 C -0.151 4.151 13 N -0.249 5.249 14 C 0.067 3.933 15 N -0.365 5.365 16 C 0.076 3.924 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.165 4.165 20 C 0.006 3.994 21 N -0.189 5.189 22 C -0.108 4.108 23 C -0.012 4.012 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.103 4.103 27 N -0.125 5.125 28 N -0.042 5.042 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.239 0.761 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.560 -6.195 -8.686 20.547 hybrid contribution 0.543 1.933 1.634 2.589 sum 18.103 -4.262 -7.052 19.890 Atomic orbital electron populations 1.69801 1.07428 1.29080 1.35947 1.25791 0.94715 1.00987 0.92576 0.86368 0.80552 0.80999 0.79158 1.19604 1.20042 1.18640 1.19099 0.96806 0.90964 1.41860 0.90986 1.17891 0.94557 0.91181 0.93581 1.21353 0.97990 0.96786 0.99029 1.21419 1.01177 0.94355 1.04237 1.21357 0.95566 0.96182 1.02043 1.66531 1.10988 1.29668 1.17700 1.18379 0.90273 0.89848 0.94850 1.43528 1.30374 1.06148 1.56425 1.19628 0.89959 0.88334 0.94455 1.23101 0.96343 0.97625 0.93238 1.22314 0.91833 0.95042 1.01731 1.21906 1.01046 1.00985 0.92583 1.21443 0.91180 0.95534 0.91287 1.59327 1.15241 1.41370 1.02965 1.23023 0.95071 0.92527 1.00222 1.22685 0.94156 1.02320 0.82030 1.88024 1.66279 1.45434 1.30420 1.22784 0.90019 0.91748 0.96975 1.22782 0.97625 1.03219 0.86664 1.73255 0.95481 1.14031 1.29764 1.72867 1.21869 1.06055 1.03444 0.90905 0.85688 0.88700 0.86412 0.76087 0.91166 0.90913 0.82718 0.83299 0.92254 0.88618 0.91849 0.87669 0.92082 0.87669 0.88198 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.45 10.93 55.55 0.61 -19.84 16 2 C 0.08 1.89 5.20 -17.32 -0.09 1.80 16 3 Si 0.90 18.50 29.59 -169.99 -5.03 13.47 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.66 8.52 -37.89 -0.32 -11.99 16 8 H 0.07 1.74 6.69 -52.48 -0.35 1.39 16 9 C 0.03 0.91 5.60 -106.47 -0.60 0.32 16 10 C -0.13 -3.23 8.79 -38.62 -0.34 -3.57 16 11 C -0.19 -4.44 10.08 -39.50 -0.40 -4.83 16 12 C 0.00 0.05 11.17 -17.32 -0.19 -0.15 16 13 N -0.53 -12.72 9.54 -11.86 -0.11 -12.83 16 14 C 0.30 7.40 7.52 -155.02 -1.17 6.23 16 15 N -0.72 -15.06 5.60 -61.15 -0.34 -15.40 16 16 C 0.20 3.51 6.01 -5.19 -0.03 3.48 16 17 C 0.04 0.68 6.23 -82.40 -0.51 0.17 16 18 C -0.08 -0.94 9.84 -39.25 -0.39 -1.33 16 19 C -0.13 -1.43 9.33 -39.00 -0.36 -1.79 16 20 C 0.24 3.07 6.47 -154.77 -1.00 2.07 16 21 N -0.47 -4.87 4.76 -172.73 -0.82 -5.69 16 22 C 0.02 0.15 5.40 -3.71 -0.02 0.13 16 23 C 0.07 0.46 7.01 37.21 0.26 0.72 16 24 O -0.38 -3.63 10.83 -35.23 -0.38 -4.01 16 25 C 0.06 0.50 7.01 37.21 0.26 0.76 16 26 C 0.02 0.25 4.83 -3.71 -0.02 0.23 16 27 N -0.28 -4.36 9.91 31.23 0.31 -4.05 16 28 N -0.20 -3.44 11.41 33.61 0.38 -3.06 16 29 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 30 H 0.13 3.30 6.25 -52.49 -0.33 2.98 16 31 H 0.09 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.40 8.36 6.67 -40.82 -0.27 8.09 16 34 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.15 1.09 7.26 -52.49 -0.38 0.71 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.60 6.89 -51.93 -0.36 0.24 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16 45 H 0.06 0.76 8.04 -51.93 -0.42 0.35 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -30.84 371.94 -10.58 -41.42 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.87 Total: 12.14 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.92 Total: -7.75 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.02 Total: -60.87 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.38 Total: -4.01 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.84 -10.58 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169737934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.019 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds