Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48505 * 109.47167 * 269.99929 * 3 2 1 5 5 H 1.48497 * 109.46872 * 30.00275 * 3 2 1 6 6 H 1.48497 * 109.47117 * 150.00208 * 3 2 1 7 7 C 1.37881 * 119.99481 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85472 * 0.02562 * 7 2 1 9 9 C 1.53221 * 108.53463 * 231.32767 * 8 7 2 10 10 C 1.52959 * 109.40637 * 305.36680 * 9 8 7 11 11 H 1.09002 * 109.41302 * 303.56559 * 10 9 8 12 12 N 1.46496 * 109.41715 * 183.70635 * 10 9 8 13 13 C 1.34777 * 120.00271 * 154.99760 * 12 10 9 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 10 16 16 C 1.50701 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.38275 * 119.93772 * 269.72913 * 16 15 13 18 18 C 1.38119 * 120.06426 * 179.72523 * 17 16 15 19 19 C 1.38815 * 119.93623 * 0.57092 * 18 17 16 20 20 N 1.40265 * 120.06454 * 179.68222 * 19 18 17 21 21 C 1.35058 * 127.38918 * 359.72906 * 20 19 18 22 22 N 1.30742 * 107.27179 * 179.90020 * 21 20 19 23 23 N 1.28415 * 110.64793 * 0.38207 * 22 21 20 24 24 N 1.28947 * 110.20224 * 359.75604 * 23 22 21 25 25 C 1.38816 * 119.87032 * 359.70288 * 19 18 17 26 26 C 1.38127 * 119.93576 * 0.02562 * 25 19 18 27 27 C 1.52959 * 109.81438 * 63.60206 * 10 9 8 28 28 C 1.51275 * 120.84746 * 179.97438 * 7 2 1 29 29 H 0.97000 * 119.99364 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.62868 * 111.60599 * 8 7 2 31 31 H 1.09000 * 109.62248 * 351.03923 * 8 7 2 32 32 H 1.09001 * 109.48218 * 185.39277 * 9 8 7 33 33 H 1.09001 * 109.48934 * 65.34882 * 9 8 7 34 34 H 0.97005 * 120.00266 * 335.00343 * 12 10 9 35 35 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 36 36 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 37 37 H 1.07998 * 119.96378 * 359.97438 * 17 16 15 38 38 H 1.08000 * 120.03186 * 180.29104 * 18 17 16 39 39 H 1.07999 * 126.36792 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.03271 * 179.97438 * 25 19 18 41 41 H 1.08004 * 119.97023 * 180.02562 * 26 25 19 42 42 H 1.08998 * 109.48685 * 56.38417 * 27 10 9 43 43 H 1.09000 * 109.48008 * 176.42492 * 27 10 9 44 44 H 1.09002 * 109.62625 * 248.39030 * 28 7 2 45 45 H 1.09004 * 109.62660 * 8.76349 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0017 9 6 1.8227 -3.3836 1.1321 10 6 3.3397 -3.5080 0.9810 11 1 3.5738 -3.9113 -0.0043 12 7 3.8596 -4.4094 2.0121 13 6 5.0171 -5.0693 1.8091 14 8 5.6284 -4.9166 0.7729 15 6 5.5516 -5.9970 2.8696 16 6 6.8481 -6.6042 2.3989 17 6 6.8375 -7.7953 1.6968 18 6 8.0237 -8.3512 1.2592 19 6 9.2283 -7.7190 1.5352 20 7 10.4351 -8.2845 1.0979 21 6 10.5996 -9.4329 0.4064 22 7 11.8824 -9.5841 0.2044 23 7 12.5407 -8.6138 0.7280 24 7 11.7335 -7.7805 1.2908 25 6 9.2363 -6.5262 2.2453 26 6 8.0464 -5.9721 2.6755 27 6 3.9905 -2.1321 1.1333 28 6 3.5170 -1.2167 -0.0011 29 1 -0.4849 0.8401 0.0004 30 1 1.4198 -3.0185 -0.9564 31 1 0.2035 -2.3410 0.1579 32 1 1.3704 -4.3742 1.0861 33 1 1.5897 -2.9215 2.0915 34 1 3.3708 -4.5313 2.8411 35 1 4.8267 -6.7888 3.0587 36 1 5.7255 -5.4368 3.7883 37 1 5.9004 -8.2894 1.4868 38 1 8.0145 -9.2791 0.7067 39 1 9.8168 -10.1014 0.0797 40 1 10.1721 -6.0323 2.4619 41 1 8.0520 -5.0439 3.2276 42 1 3.7062 -1.6996 2.0925 43 1 5.0746 -2.2358 1.0881 44 1 3.8771 -1.6000 -0.9559 45 1 3.8983 -0.2075 0.1554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176868424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 97.597321 kcal Electronic energy + Delta-G solvation = -28092.434204 eV Core-core repulsion = 24112.046748 eV Total energy + Delta-G solvation = -3980.387456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.57246 -40.38234 -39.28187 -36.91054 -35.68218 -33.78784 -32.76651 -32.40464 -31.53110 -31.49089 -29.74363 -28.44301 -26.92062 -24.82011 -24.39652 -22.59549 -22.17559 -21.77697 -21.50901 -20.09795 -19.54162 -19.09446 -17.09114 -16.96691 -16.68915 -16.35752 -16.06150 -15.93487 -15.27751 -14.77268 -14.61513 -14.47623 -14.02188 -13.98346 -13.64399 -13.50260 -13.24732 -12.93827 -12.83109 -12.48532 -12.28574 -12.14307 -12.09519 -11.76957 -11.64091 -11.53553 -11.40048 -11.07985 -10.90134 -10.88294 -10.77565 -10.25914 -10.07514 -9.77813 -9.58413 -9.52568 -9.08774 -8.97639 -8.84556 -8.54593 -8.38030 -6.16026 -4.06983 -0.07782 0.83541 1.21250 1.35919 1.87353 2.77216 3.08483 3.23842 3.32218 3.33125 3.57036 3.61496 3.81146 4.24028 4.27927 4.33609 4.39815 4.45498 4.81492 4.84896 4.91850 4.95948 5.06248 5.12054 5.17439 5.21325 5.48155 5.61119 5.67823 5.74544 5.81169 5.95666 6.07468 6.11486 6.37464 6.39168 6.40797 6.63263 6.68497 6.81909 6.89122 7.04964 7.16882 7.37334 7.58572 7.64277 7.68780 7.83219 7.99368 8.31861 8.43214 8.90173 9.48892 10.93335 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.001951 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.760212 B =14345.863349 C =14930.389827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.488 4.488 8 C 0.012 3.988 9 C -0.114 4.114 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.723 5.723 13 C 0.508 3.492 14 O -0.536 6.536 15 C -0.110 4.110 16 C -0.044 4.044 17 C -0.082 4.082 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.320 5.320 21 C 0.224 3.776 22 N -0.332 5.332 23 N -0.038 5.038 24 N -0.077 5.077 25 C -0.096 4.096 26 C -0.083 4.083 27 C -0.112 4.112 28 C -0.020 4.020 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.239 0.761 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.018 0.982 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.479 -18.117 8.649 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.507 4.507 8 C -0.026 4.026 9 C -0.152 4.152 10 C 0.051 3.949 11 H 0.096 0.904 12 N -0.373 5.373 13 C 0.293 3.707 14 O -0.413 6.413 15 C -0.150 4.150 16 C -0.046 4.046 17 C -0.100 4.100 18 C -0.137 4.137 19 C 0.027 3.973 20 N -0.110 5.110 21 C -0.073 4.073 22 N -0.181 5.181 23 N -0.033 5.033 24 N -0.062 5.062 25 C -0.117 4.117 26 C -0.102 4.102 27 C -0.151 4.151 28 C -0.058 4.058 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.228 0.772 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.255 0.745 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.182 -17.538 7.961 23.339 hybrid contribution -0.875 0.792 0.423 1.254 sum 12.306 -16.745 8.384 22.409 Atomic orbital electron populations 1.69830 1.06118 1.26968 1.49853 1.24848 0.94733 0.98604 0.94510 0.86679 0.79960 0.83232 0.78604 1.20366 1.21645 1.18975 1.20041 0.89362 0.91432 1.49884 1.19340 0.98740 0.92814 0.91661 1.21925 0.92301 0.98585 1.02387 1.21069 0.94500 0.88960 0.90331 0.90441 1.46435 1.23507 1.45765 1.21605 1.20310 0.81399 0.80964 0.88026 1.90739 1.57883 1.64764 1.27906 1.20794 0.95216 0.99827 0.99159 1.19546 0.94262 0.94176 0.96568 1.20867 0.97541 0.95255 0.96368 1.20773 0.90170 1.00871 1.01898 1.17563 0.81036 0.96339 1.02408 1.49097 1.07303 1.17010 1.37636 1.27429 0.97411 0.89086 0.93335 1.74485 1.01832 1.19873 1.21919 1.78084 1.22661 0.97352 1.05196 1.82676 0.83462 1.19329 1.20754 1.20910 0.99988 0.93510 0.97248 1.20986 0.90732 0.99413 0.99025 1.21881 0.97175 0.95171 1.00833 1.19800 0.96607 0.95515 0.93838 0.92572 0.97581 0.92061 0.94633 0.92699 0.77222 0.87610 0.87597 0.84368 0.84737 0.74492 0.84119 0.84462 0.93091 0.94586 0.96343 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 12.73 55.43 0.71 -24.10 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.89 20.66 27.53 -169.99 -4.68 15.98 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -5.98 6.11 56.52 0.35 -5.63 16 7 C -0.49 -12.41 5.51 -98.92 -0.55 -12.96 16 8 C 0.01 0.29 5.97 -27.49 -0.16 0.13 16 9 C -0.11 -2.15 5.40 -26.64 -0.14 -2.29 16 10 C 0.15 2.78 2.35 -67.98 -0.16 2.62 16 11 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 12 N -0.72 -9.67 5.07 -53.85 -0.27 -9.94 16 13 C 0.51 6.61 7.78 -10.98 -0.09 6.52 16 14 O -0.54 -9.43 15.70 5.56 0.09 -9.34 16 15 C -0.11 -0.85 5.83 -29.03 -0.17 -1.02 16 16 C -0.04 -0.38 4.38 -104.59 -0.46 -0.84 16 17 C -0.08 -0.61 9.69 -39.61 -0.38 -0.99 16 18 C -0.12 -0.79 9.49 -39.41 -0.37 -1.17 16 19 C 0.12 1.05 6.70 -83.57 -0.56 0.49 16 20 N -0.32 -3.09 3.85 -11.74 -0.05 -3.14 16 21 C 0.22 1.72 12.16 -90.16 -1.10 0.62 16 22 N -0.33 -3.67 12.15 29.64 0.36 -3.31 16 23 N -0.04 -0.49 13.39 60.35 0.81 0.32 16 24 N -0.08 -0.94 13.34 60.35 0.80 -0.13 16 25 C -0.10 -0.89 9.70 -39.41 -0.38 -1.27 16 26 C -0.08 -0.72 9.69 -39.61 -0.38 -1.11 16 27 C -0.11 -2.23 5.50 -26.61 -0.15 -2.37 16 28 C -0.02 -0.45 5.60 -27.46 -0.15 -0.60 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 4.01 8.60 -40.82 -0.35 3.66 16 35 H 0.11 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.46 6.88 -52.49 -0.36 0.10 16 39 H 0.24 0.50 7.19 -52.49 -0.38 0.12 16 40 H 0.14 1.25 7.77 -52.48 -0.41 0.84 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.63 374.43 -7.80 -41.43 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.91 Total: -1.09 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -5.30 Total: -12.33 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 2.36 Total: -40.30 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.68 Total: 15.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.63 -7.80 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176868424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.028 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds