Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46784 * 300.00182 * 3 2 1 6 6 H 1.48497 * 109.47041 * 59.99913 * 3 2 1 7 7 C 1.37876 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00374 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47113 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99928 * 169.99643 * 10 9 7 12 12 C 1.53242 * 109.33908 * 187.25512 * 11 10 9 13 13 N 1.47076 * 108.51974 * 306.17010 * 12 11 10 14 14 C 1.34782 * 120.88198 * 231.18679 * 13 12 11 15 15 O 1.21570 * 120.00138 * 184.13485 * 14 13 12 16 16 C 1.47751 * 119.99811 * 4.12822 * 14 13 12 17 17 C 1.41137 * 126.32159 * 173.53927 * 16 14 13 18 18 C 1.36708 * 105.44914 * 180.02562 * 17 16 14 19 19 C 1.47931 * 126.60009 * 179.97438 * 18 17 16 20 20 C 1.39509 * 119.74575 * 179.72130 * 19 18 17 21 21 C 1.38341 * 119.05365 * 179.77020 * 20 19 18 22 22 C 1.38818 * 118.53029 * 0.49457 * 21 20 19 23 23 C 1.38254 * 119.39900 * 359.75165 * 22 21 20 24 24 N 1.31755 * 120.90624 * 359.97438 * 23 22 21 25 25 N 1.36417 * 106.80305 * 359.97438 * 18 17 16 26 26 H 0.96999 * 125.02388 * 179.97438 * 25 18 17 27 27 N 1.28460 * 109.95824 * 0.24752 * 25 18 17 28 28 C 1.47083 * 118.23774 * 51.46074 * 13 12 11 29 29 C 1.46898 * 111.00404 * 294.30072 * 10 9 7 30 30 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47390 * 59.99731 * 9 7 2 32 32 H 1.09000 * 109.46645 * 299.99748 * 9 7 2 33 33 H 1.08997 * 109.49464 * 67.29895 * 11 10 9 34 34 H 1.09003 * 109.49533 * 307.21391 * 11 10 9 35 35 H 1.09006 * 109.62602 * 186.45947 * 12 11 10 36 36 H 1.09005 * 109.62853 * 65.88298 * 12 11 10 37 37 H 1.07998 * 127.27129 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.46567 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.73081 * 180.22575 * 21 20 19 40 40 H 1.07997 * 120.30533 * 179.72281 * 22 21 20 41 41 H 1.07998 * 119.54488 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.62527 * 68.25326 * 28 13 12 43 43 H 1.09003 * 109.62716 * 188.82754 * 28 13 12 44 44 H 1.09007 * 109.49035 * 292.70841 * 29 10 9 45 45 H 1.08999 * 109.48892 * 52.78086 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5210 -4.8935 0.2388 12 6 2.5636 -6.0032 0.4116 13 7 3.4613 -5.9863 -0.7533 14 6 3.7116 -7.1125 -1.4502 15 8 4.5138 -7.0965 -2.3635 16 6 3.0112 -8.3665 -1.1040 17 6 3.0726 -9.5827 -1.8174 18 6 2.2705 -10.4496 -1.1289 19 6 1.9988 -11.8625 -1.4731 20 6 1.1563 -12.6229 -0.6618 21 6 0.9082 -13.9412 -0.9998 22 6 1.5188 -14.4614 -2.1328 23 6 2.3469 -13.6530 -2.8892 24 7 2.5628 -12.3985 -2.5491 25 7 1.7688 -9.7612 -0.0634 26 1 1.1652 -10.1274 0.6017 27 7 2.2094 -8.5546 -0.0742 28 6 4.0836 -4.7091 -1.1338 29 6 2.9766 -3.6492 -1.2493 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5566 0.8903 33 1 0.8794 -5.1264 -0.6110 34 1 0.9158 -4.8191 1.1423 35 1 2.0629 -6.9694 0.4741 36 1 3.1393 -5.8265 1.3202 37 1 3.6346 -9.7856 -2.7170 38 1 0.7015 -12.1874 0.2157 39 1 0.2575 -14.5535 -0.3930 40 1 1.3488 -15.4883 -2.4207 41 1 2.8234 -14.0554 -3.7709 42 1 4.8025 -4.4105 -0.3710 43 1 4.5884 -4.8193 -2.0936 44 1 2.3147 -3.8994 -2.0785 45 1 3.4270 -2.6723 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189471759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 105.383708 kcal Electronic energy + Delta-G solvation = -28392.596305 eV Core-core repulsion = 24412.546492 eV Total energy + Delta-G solvation = -3980.049813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94814 -40.46330 -39.57009 -37.36959 -34.41828 -33.41968 -33.05659 -32.36182 -32.01841 -30.69929 -29.67553 -28.22376 -25.69326 -24.50991 -24.46057 -23.72336 -22.77761 -21.77302 -21.47479 -20.28167 -19.22717 -18.33232 -17.33503 -16.74511 -16.57212 -16.31708 -16.12656 -15.67126 -15.58370 -14.84173 -14.69710 -14.37772 -14.29984 -14.06910 -13.90298 -13.71240 -13.67478 -13.50503 -13.29054 -12.72793 -12.44900 -12.28305 -12.00776 -11.38939 -11.18032 -10.82748 -10.74254 -10.67857 -10.65099 -10.50139 -10.34256 -10.28563 -10.02935 -9.92936 -9.68313 -9.62900 -9.18741 -8.82349 -8.45845 -8.34534 -7.24978 -6.02920 -4.04323 0.16516 0.68831 1.43086 1.97780 2.28722 3.11914 3.31915 3.34526 3.39379 3.44326 3.45529 3.63317 4.01235 4.21178 4.28426 4.42532 4.43409 4.50227 4.81079 4.85208 4.95265 5.04993 5.27740 5.31708 5.33520 5.47181 5.55091 5.57370 5.63220 5.75311 5.79335 5.92720 6.00385 6.05055 6.08367 6.27651 6.33652 6.51985 6.57347 6.63472 6.86427 7.28091 7.33102 7.39082 7.49067 7.68034 7.79976 8.06853 8.17792 8.30319 8.53392 9.03551 9.60152 11.07976 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028997 B = 0.001978 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.387896 B =14154.427932 C =14729.310587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.043 3.957 12 C 0.083 3.917 13 N -0.592 5.592 14 C 0.597 3.403 15 O -0.539 6.539 16 C -0.003 4.003 17 C -0.115 4.115 18 C 0.042 3.958 19 C 0.202 3.798 20 C -0.170 4.170 21 C -0.065 4.065 22 C -0.175 4.175 23 C 0.114 3.886 24 N -0.466 5.466 25 N -0.377 5.377 26 H 0.445 0.555 27 N -0.234 5.234 28 C 0.115 3.885 29 C 0.052 3.948 30 H 0.260 0.740 31 H -0.010 1.010 32 H 0.031 0.969 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.172 0.828 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.025 0.975 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.066 -31.034 -0.602 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.087 4.087 12 C -0.040 4.040 13 N -0.324 5.324 14 C 0.382 3.618 15 O -0.415 6.415 16 C -0.163 4.163 17 C -0.144 4.144 18 C -0.083 4.083 19 C 0.064 3.936 20 C -0.191 4.191 21 C -0.091 4.091 22 C -0.195 4.195 23 C -0.044 4.044 24 N -0.175 5.175 25 N -0.093 5.093 26 H 0.290 0.710 27 N -0.070 5.070 28 C -0.007 4.007 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.008 0.992 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.190 0.810 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.181 0.819 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.043 0.957 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.806 -29.713 -0.335 29.769 hybrid contribution -1.026 -0.271 -0.264 1.093 sum 0.780 -29.983 -0.599 29.999 Atomic orbital electron populations 1.69972 1.06088 1.26669 1.51098 1.25001 0.94871 0.99373 0.95431 0.86436 0.80116 0.83378 0.77465 1.19589 1.21146 1.21052 1.21200 0.93567 0.89879 1.49932 0.91696 1.19725 0.90045 0.87299 0.96123 1.62091 1.27959 1.02712 1.33418 1.22381 0.95014 0.90676 1.00585 1.22823 0.91984 1.02003 0.87239 1.48079 1.46195 1.08101 1.29990 1.16955 0.81439 0.81412 0.81952 1.90777 1.35293 1.84597 1.30848 1.22029 1.01897 0.96692 0.95643 1.21813 1.00695 0.90088 1.01797 1.19316 1.03388 0.92477 0.93115 1.18566 0.93468 0.90103 0.91437 1.21951 1.00446 0.95550 1.01125 1.21517 0.97023 0.94608 0.95963 1.22276 0.98927 1.01865 0.96410 1.22822 0.94519 0.88413 0.98660 1.67577 1.21711 1.13420 1.14824 1.43758 1.36783 1.07213 1.21548 0.71011 1.73323 1.12996 0.98864 1.21826 1.22020 0.95848 0.81304 1.01505 1.22421 0.95099 0.99063 0.91159 0.92995 0.99172 0.95083 0.95798 0.90280 0.85425 0.91063 0.81011 0.85064 0.84260 0.84287 0.81917 0.90663 0.89275 0.95708 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.16 8.41 -34.44 -0.29 -14.45 16 8 H 0.06 1.79 7.13 -52.49 -0.37 1.41 16 9 C 0.19 5.03 4.72 -4.98 -0.02 5.00 16 10 N -0.54 -11.61 4.62 -235.47 -1.09 -12.70 16 11 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 12 C 0.08 1.29 6.46 -3.60 -0.02 1.27 16 13 N -0.59 -9.97 3.00 -173.33 -0.52 -10.49 16 14 C 0.60 10.15 7.71 -12.37 -0.10 10.05 16 15 O -0.54 -10.40 16.39 5.30 0.09 -10.31 16 16 C 0.00 -0.05 6.88 -82.87 -0.57 -0.62 16 17 C -0.12 -1.48 10.52 -39.04 -0.41 -1.89 16 18 C 0.04 0.43 7.00 -82.41 -0.58 -0.15 16 19 C 0.20 1.78 6.75 -83.01 -0.56 1.22 16 20 C -0.17 -0.98 9.75 -39.07 -0.38 -1.36 16 21 C -0.07 -0.29 10.16 -39.33 -0.40 -0.69 16 22 C -0.17 -0.78 10.11 -39.36 -0.40 -1.18 16 23 C 0.11 0.72 11.17 -17.58 -0.20 0.53 16 24 N -0.47 -4.41 10.08 -9.83 -0.10 -4.51 16 25 N -0.38 -3.31 6.80 33.31 0.23 -3.08 16 26 H 0.44 2.09 8.06 -190.45 -1.53 0.56 16 27 N -0.23 -2.81 8.54 33.36 0.28 -2.53 16 28 C 0.12 2.00 6.62 -3.37 -0.02 1.98 16 29 C 0.05 1.04 5.47 -3.47 -0.02 1.02 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 35 H 0.13 1.78 3.81 -109.12 -0.42 1.36 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.13 0.40 7.17 -52.49 -0.38 0.02 16 39 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 40 H 0.14 0.25 8.06 -52.49 -0.42 -0.18 16 41 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.51 7.08 -51.93 -0.37 1.15 16 44 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 45 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -35.11 373.50 -11.03 -46.14 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.18 Total: -1.74 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -4.08 Total: 2.94 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.46 Total: -59.29 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.11 -11.03 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189471759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.526 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds