Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 120.00153 * 2 1 4 4 H 1.48498 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47144 * 299.99818 * 3 2 1 6 6 H 1.48505 * 109.46831 * 59.99637 * 3 2 1 7 7 C 1.38804 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00042 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99987 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46888 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00320 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.44675 * 118.54546 * 0.02562 * 13 11 10 15 15 C 1.54950 * 109.52037 * 269.05052 * 14 13 11 16 16 C 1.47538 * 109.73331 * 290.52481 * 15 14 13 17 17 N 1.46263 * 114.37668 * 62.21991 * 16 15 14 18 18 C 1.46904 * 111.00015 * 148.55354 * 17 16 15 19 19 H 1.08995 * 109.33004 * 179.97438 * 18 17 16 20 20 C 1.53065 * 109.40064 * 60.18939 * 18 17 16 21 21 C 1.53348 * 108.42442 * 190.97020 * 20 18 17 22 22 C 1.52921 * 108.67552 * 67.53344 * 21 20 18 23 23 N 1.45773 * 110.42026 * 309.03493 * 22 21 20 24 24 C 1.33356 * 124.09552 * 19.57300 * 23 22 21 25 25 O 1.21276 * 118.24480 * 177.49039 * 24 23 22 26 26 C 1.44759 * 110.63894 * 272.24689 * 17 16 15 27 27 C 1.47778 * 118.54789 * 179.97438 * 13 11 10 28 28 H 0.96998 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.08989 * 109.47245 * 59.99858 * 10 9 7 30 30 H 1.09007 * 109.46783 * 299.99698 * 10 9 7 31 31 H 1.09004 * 109.46226 * 149.03854 * 14 13 11 32 32 H 1.09000 * 109.45611 * 29.06246 * 14 13 11 33 33 H 1.09006 * 109.42719 * 170.44353 * 15 14 13 34 34 H 1.08999 * 109.43069 * 50.60543 * 15 14 13 35 35 H 1.09000 * 108.50252 * 300.95286 * 16 15 14 36 36 H 1.09002 * 108.50227 * 183.49117 * 16 15 14 37 37 H 1.08994 * 109.67726 * 310.70589 * 20 18 17 38 38 H 1.08997 * 109.67256 * 71.20514 * 20 18 17 39 39 H 1.09002 * 109.60568 * 187.29012 * 21 20 18 40 40 H 1.09004 * 109.60366 * 307.61302 * 21 20 18 41 41 H 1.09004 * 109.30072 * 69.55740 * 22 21 20 42 42 H 1.08991 * 109.30493 * 189.14322 * 22 21 20 43 43 H 0.97003 * 117.96252 * 199.30949 * 23 22 21 44 44 H 1.08996 * 109.43603 * 214.22213 * 26 17 16 45 45 H 1.08995 * 109.44069 * 334.09782 * 26 17 16 46 46 H 1.09004 * 109.06421 * 258.67371 * 27 13 11 47 47 H 1.09002 * 109.06099 * 17.60229 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3432 0.0022 14 6 4.2646 -6.0690 0.0037 15 6 4.7790 -5.9941 -1.4560 16 6 4.7409 -7.3365 -2.0671 17 7 3.4022 -7.9176 -2.1646 18 6 3.2908 -8.7884 -3.3424 19 1 2.2852 -9.2063 -3.3883 20 6 4.3094 -9.9256 -3.2321 21 6 4.3698 -10.6546 -4.5799 22 6 4.9777 -9.7122 -5.6196 23 7 4.2910 -8.4264 -5.6037 24 6 3.5544 -7.9848 -4.5835 25 8 3.0673 -6.8772 -4.6644 26 6 3.0691 -8.6376 -0.9537 27 6 2.2910 -7.7135 0.0024 28 1 -0.4850 0.8400 -0.0004 29 1 3.1238 -3.7310 0.8924 30 1 3.1251 -3.7318 -0.8876 31 1 4.7878 -6.8657 0.5327 32 1 4.4504 -5.1183 0.5035 33 1 5.8038 -5.6226 -1.4607 34 1 4.1461 -5.3167 -2.0292 35 1 5.3656 -8.0044 -1.4740 36 1 5.1641 -7.2723 -3.0695 37 1 5.2909 -9.5171 -2.9916 38 1 4.0001 -10.6209 -2.4518 39 1 4.9909 -11.5454 -4.4864 40 1 3.3636 -10.9408 -4.8863 41 1 6.0343 -9.5633 -5.3967 42 1 4.8774 -10.1556 -6.6101 43 1 4.3783 -7.8545 -6.3824 44 1 2.4539 -9.5020 -1.2034 45 1 3.9851 -8.9734 -0.4677 46 1 2.3450 -8.1192 1.0127 47 1 1.2472 -7.6761 -0.3095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194919276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = -80.563471 kcal Electronic energy + Delta-G solvation = -28760.625252 eV Core-core repulsion = 24875.663364 eV Total energy + Delta-G solvation = -3884.961887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98837 -40.90808 -38.98103 -37.43349 -36.30295 -34.59435 -33.89648 -33.09570 -31.36315 -30.00570 -28.06909 -27.63523 -26.98574 -25.25082 -23.50343 -23.20971 -21.87056 -20.36994 -19.69882 -19.43998 -18.45119 -18.11689 -17.72287 -17.25873 -16.89885 -16.80610 -16.49677 -16.12919 -15.91456 -15.61168 -15.23030 -15.12624 -14.87515 -14.64287 -14.46271 -14.34879 -14.08131 -13.89175 -13.54313 -13.23830 -13.19727 -13.07085 -12.91612 -12.72842 -12.59192 -12.35306 -12.24595 -12.20061 -11.96939 -11.87953 -11.72483 -11.60527 -11.16230 -10.78019 -10.71528 -10.26520 -10.04845 -9.54456 -9.16731 -8.67568 -8.34995 -6.13444 1.26149 1.40444 1.45568 1.56328 1.58039 1.67377 2.18125 2.26349 2.29477 2.88207 2.98523 3.29020 3.55328 3.69390 3.76011 3.83635 3.87679 3.95930 3.99983 4.09465 4.20312 4.24205 4.32225 4.41882 4.44970 4.48332 4.54537 4.59951 4.63081 4.71908 4.81805 4.84871 4.88208 4.96099 5.00310 5.03601 5.06485 5.28723 5.33412 5.40300 5.70304 5.83163 6.03552 6.19295 6.20239 6.38129 6.38854 7.05359 7.26093 7.27190 8.74983 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002802 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.704866 B = 9990.739804 C =10674.235290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.080 0.920 9 S -0.157 6.157 10 C -0.118 4.118 11 C 0.528 3.472 12 O -0.572 6.572 13 N -0.586 5.586 14 C 0.109 3.891 15 C -0.138 4.138 16 C 0.071 3.929 17 N -0.545 5.545 18 C 0.081 3.919 19 H 0.108 0.892 20 C -0.147 4.147 21 C -0.131 4.131 22 C 0.103 3.897 23 N -0.718 5.718 24 C 0.511 3.489 25 O -0.592 6.592 26 C 0.058 3.942 27 C 0.115 3.885 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.399 0.601 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.862 -29.333 -7.139 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.824 3.176 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.691 4.691 8 H 0.099 0.901 9 S 0.070 5.930 10 C -0.270 4.270 11 C 0.315 3.685 12 O -0.451 6.451 13 N -0.318 5.318 14 C -0.014 4.014 15 C -0.177 4.177 16 C -0.056 4.056 17 N -0.269 5.269 18 C -0.030 4.030 19 H 0.125 0.875 20 C -0.186 4.186 21 C -0.169 4.169 22 C -0.020 4.020 23 N -0.370 5.370 24 C 0.298 3.702 25 O -0.471 6.471 26 C -0.071 4.071 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.234 0.766 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.386 -28.799 -7.029 34.366 hybrid contribution 1.594 1.346 -0.619 2.176 sum 18.979 -27.453 -7.647 34.240 Atomic orbital electron populations 1.70207 1.08042 1.28543 1.48099 1.26191 0.96035 1.03436 0.93708 0.84861 0.78556 0.76053 0.78175 1.17988 1.19966 1.19515 1.23202 0.95198 0.91906 1.58792 0.90148 1.85565 1.11017 0.99451 1.96962 1.23358 1.03036 0.95038 1.05520 1.20121 0.86242 0.86900 0.75211 1.90637 1.17529 1.85884 1.51074 1.47517 1.06689 1.05336 1.72249 1.21834 0.79333 1.03591 0.96625 1.21464 1.02051 0.97799 0.96363 1.20901 0.88287 0.96208 1.00174 1.60513 1.29447 1.34685 1.02277 1.21767 1.02175 0.91538 0.87518 0.87475 1.22423 0.99276 0.96908 1.00025 1.21871 1.03010 0.98892 0.93097 1.21717 0.96508 0.81899 1.01883 1.45670 1.50593 1.21929 1.18803 1.20496 0.77641 0.86432 0.85658 1.90828 1.51715 1.23233 1.81311 1.22389 1.01022 0.94864 0.88797 1.22107 0.98365 0.80342 0.99952 0.91979 0.87449 0.88924 0.86789 0.90259 0.87848 0.95113 0.90953 0.93365 0.90350 0.88287 0.86805 0.90986 0.90232 0.88428 0.76593 0.88075 0.89977 0.89382 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.91 13.22 21.65 0.29 -58.63 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 45.92 29.55 68.60 2.03 47.94 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -33.17 9.50 67.96 0.65 -32.53 16 8 H 0.08 4.59 7.80 -2.91 -0.02 4.57 16 9 S -0.16 -9.57 20.57 -56.49 -1.16 -10.73 16 10 C -0.12 -5.43 4.62 71.24 0.33 -5.10 16 11 C 0.53 22.87 7.65 87.66 0.67 23.54 16 12 O -0.57 -30.11 15.14 -3.04 -0.05 -30.16 16 13 N -0.59 -17.74 2.53 -817.07 -2.07 -19.81 16 14 C 0.11 2.38 5.23 87.39 0.46 2.84 16 15 C -0.14 -3.13 5.95 29.55 0.18 -2.96 16 16 C 0.07 1.33 3.45 84.72 0.29 1.62 16 17 N -0.55 -11.66 3.92 -891.81 -3.50 -15.16 16 18 C 0.08 1.42 2.24 44.03 0.10 1.52 16 19 H 0.11 1.94 7.96 -2.39 -0.02 1.92 16 20 C -0.15 -1.02 4.77 30.73 0.15 -0.87 16 21 C -0.13 -0.46 6.02 30.68 0.18 -0.28 16 22 C 0.10 0.54 7.17 86.49 0.62 1.16 16 23 N -0.72 -10.69 5.45 -467.28 -2.55 -13.24 16 24 C 0.51 12.15 5.65 87.71 0.50 12.65 16 25 O -0.59 -22.30 17.45 -3.02 -0.05 -22.35 16 26 C 0.06 0.89 4.58 87.06 0.40 1.29 16 27 C 0.11 2.79 6.46 86.49 0.56 3.35 16 28 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 29 H 0.11 4.39 7.30 -2.40 -0.02 4.37 16 30 H 0.09 4.15 7.27 -2.39 -0.02 4.13 16 31 H 0.11 1.54 8.10 -2.38 -0.02 1.53 16 32 H 0.08 1.82 6.18 -2.39 -0.01 1.80 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.03 1.02 7.42 -2.39 -0.02 1.01 16 35 H 0.07 0.81 6.80 -2.39 -0.02 0.80 16 36 H 0.05 0.99 6.24 -2.39 -0.01 0.98 16 37 H 0.08 0.52 6.55 -2.39 -0.02 0.51 16 38 H 0.10 0.35 7.52 -2.39 -0.02 0.33 16 39 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.07 0.34 8.12 -2.38 -0.02 0.33 16 41 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 42 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.40 5.99 8.80 -92.71 -0.82 5.17 16 44 H 0.10 1.15 7.28 -2.39 -0.02 1.13 16 45 H 0.08 0.74 7.14 -2.39 -0.02 0.72 16 46 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.06 1.80 6.97 -2.39 -0.02 1.79 16 Total: -1.00 -96.30 374.41 -1.35 -97.65 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.17 Total: 17.14 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.54 Total: 7.34 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -7.83 Total: -106.84 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.10 Total: -52.51 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -1.16 Total: -10.73 kcal Total: -96.30 -1.35 -97.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194919276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.083 kcal (2) G-P(sol) polarization free energy of solvation -96.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds