Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46883 * 270.00155 * 3 2 1 5 5 H 1.48506 * 109.46691 * 29.99836 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99883 * 3 2 1 7 7 C 1.38801 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63272 * 359.71537 * 13 11 10 15 15 C 1.52764 * 109.01053 * 233.58920 * 14 13 11 16 16 C 1.53039 * 109.37787 * 305.58433 * 15 14 13 17 17 N 1.46904 * 109.45691 * 181.25655 * 16 15 14 18 18 C 1.46904 * 110.99271 * 84.93486 * 17 16 15 19 19 H 1.09000 * 109.40265 * 324.82580 * 18 17 16 20 20 C 1.53072 * 109.39795 * 204.99780 * 18 17 16 21 21 C 1.53343 * 108.42764 * 190.97240 * 20 18 17 22 22 C 1.52918 * 108.67525 * 67.52978 * 21 20 18 23 23 N 1.45761 * 110.48765 * 309.24913 * 22 21 20 24 24 C 1.33346 * 124.10446 * 19.07291 * 23 22 21 25 25 O 1.21282 * 118.24434 * 177.77414 * 24 23 22 26 26 C 1.53040 * 109.53898 * 61.24336 * 16 15 14 27 27 C 1.46924 * 120.63488 * 179.97438 * 13 11 10 28 28 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 1.09005 * 109.58391 * 353.42022 * 14 13 11 32 32 H 1.08997 * 109.58907 * 113.84263 * 14 13 11 33 33 H 1.08993 * 109.56511 * 185.54996 * 15 14 13 34 34 H 1.09000 * 109.36061 * 65.49472 * 15 14 13 35 35 H 1.08994 * 109.46486 * 301.21986 * 16 15 14 36 36 H 1.00890 * 111.00316 * 320.98309 * 17 16 15 37 37 H 1.09001 * 109.67369 * 310.70566 * 20 18 17 38 38 H 1.08997 * 109.67301 * 71.23820 * 20 18 17 39 39 H 1.09001 * 109.60403 * 187.28880 * 21 20 18 40 40 H 1.09002 * 109.60221 * 307.77609 * 21 20 18 41 41 H 1.09005 * 109.29960 * 69.55968 * 22 21 20 42 42 H 1.09002 * 109.30379 * 189.14033 * 22 21 20 43 43 H 0.97005 * 117.94192 * 199.07182 * 23 22 21 44 44 H 1.09000 * 109.49582 * 178.68345 * 26 16 15 45 45 H 1.08997 * 109.50051 * 58.58400 * 26 16 15 46 46 H 1.09001 * 109.58957 * 246.15724 * 27 13 11 47 47 H 1.09007 * 109.57990 * 6.43473 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7722 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 5.1243 -5.6390 0.0058 15 6 5.4853 -6.5626 1.1678 16 6 6.9637 -6.9460 1.0714 17 7 7.3054 -7.8582 2.1710 18 6 6.9853 -9.2484 1.8204 19 1 6.0834 -9.2690 1.2087 20 6 6.7501 -10.0543 3.1003 21 6 6.6922 -11.5419 2.7327 22 6 8.0790 -11.9852 2.2653 23 7 8.5876 -11.0775 1.2445 24 6 8.1257 -9.8426 1.0448 25 8 8.6551 -9.1629 0.1911 26 6 7.8267 -5.6858 1.1677 27 6 7.4922 -4.7523 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4313 0.8904 30 1 3.6434 -3.4317 -0.8896 31 1 4.1010 -5.2837 0.1276 32 1 5.2142 -6.1853 -0.9331 33 1 4.8723 -7.4627 1.1227 34 1 5.3043 -6.0454 2.1101 35 1 7.1491 -7.4411 0.1182 36 1 6.8425 -7.5848 3.0247 37 1 7.5686 -9.8806 3.7989 38 1 5.8074 -9.7520 3.5563 39 1 6.3975 -12.1233 3.6064 40 1 5.9703 -11.6923 1.9299 41 1 8.7613 -11.9899 3.1154 42 1 8.0148 -12.9907 1.8494 43 1 9.3072 -11.3915 0.6747 44 1 8.8801 -5.9619 1.1224 45 1 7.6236 -5.1769 2.1099 46 1 7.7789 -5.2250 -0.9400 47 1 8.0309 -3.8117 0.1145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199387607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = -72.725538 kcal Electronic energy + Delta-G solvation = -27589.424720 eV Core-core repulsion = 23704.802711 eV Total energy + Delta-G solvation = -3884.622009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89877 -39.88915 -37.79644 -36.87892 -35.47568 -32.93419 -32.42860 -31.69165 -30.85677 -29.21656 -28.08563 -25.61501 -24.74433 -23.99541 -23.34413 -22.74871 -20.93193 -19.68803 -19.02527 -17.75007 -17.68369 -16.87521 -16.69700 -16.26533 -15.61131 -15.35881 -15.33831 -14.96021 -14.91860 -14.59126 -14.45301 -14.07667 -14.03128 -13.81757 -13.73689 -13.28106 -12.97816 -12.75631 -12.67917 -12.37126 -12.17773 -11.99779 -11.87209 -11.69582 -11.41009 -11.37246 -11.24376 -11.00016 -10.99527 -10.67653 -10.54883 -10.06677 -9.84177 -9.48765 -9.41772 -8.99211 -8.79414 -8.52871 -8.46489 -6.90189 -6.28036 -3.99360 2.30730 2.75272 2.83498 2.98817 3.23952 3.34817 3.52317 3.61209 3.67488 4.02847 4.10125 4.26776 4.34373 4.36250 4.52685 4.56823 4.70788 4.76077 4.80810 4.88141 4.97273 5.07206 5.11102 5.13106 5.18611 5.20598 5.23513 5.29793 5.38950 5.50097 5.53038 5.61324 5.63819 5.77550 5.80688 5.96404 5.98443 6.01362 6.12614 6.36901 6.60485 6.65560 6.88250 7.04005 7.53612 7.90913 7.94969 8.41952 8.50063 9.18386 10.81125 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.002091 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.779751 B =13384.553570 C =14056.793087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.087 0.913 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.617 5.617 14 C 0.113 3.887 15 C -0.166 4.166 16 C 0.089 3.911 17 N -0.667 5.667 18 C 0.076 3.924 19 H 0.078 0.922 20 C -0.128 4.128 21 C -0.135 4.135 22 C 0.110 3.890 23 N -0.724 5.724 24 C 0.527 3.473 25 O -0.538 6.538 26 C -0.115 4.115 27 C 0.114 3.886 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.349 0.651 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.399 0.601 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.548 -28.858 6.835 33.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.394 6.394 13 N -0.353 5.353 14 C -0.012 4.012 15 C -0.206 4.206 16 C -0.021 4.021 17 N -0.298 5.298 18 C -0.038 4.038 19 H 0.096 0.904 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.015 4.015 23 N -0.378 5.378 24 C 0.313 3.687 25 O -0.414 6.414 26 C -0.154 4.154 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.169 0.831 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.234 0.766 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.273 -26.961 6.357 32.126 hybrid contribution -1.641 -0.733 -0.059 1.799 sum 14.631 -27.694 6.298 31.948 Atomic orbital electron populations 1.69935 1.05906 1.27748 1.48155 1.24713 0.94456 0.98977 0.93189 0.86732 0.81909 0.83248 0.79956 1.19201 1.19965 1.15904 1.22310 0.88298 0.97488 1.58699 0.89447 1.84805 1.09204 1.00238 1.97392 1.23307 0.94284 1.04114 1.05443 1.20274 0.90563 0.81902 0.75153 1.90685 1.58740 1.41686 1.48320 1.48084 1.06681 1.05483 1.75101 1.21531 0.94327 0.87227 0.98085 1.22623 0.98055 0.99790 1.00159 1.21727 0.91999 0.93177 0.95152 1.60245 1.63738 0.99497 1.06368 1.21330 0.95186 0.90488 0.96747 0.90397 1.21882 1.03599 0.94398 0.96726 1.21859 0.96586 0.96298 1.02595 1.21384 0.95529 0.93080 0.91477 1.45498 1.39901 1.14822 1.37561 1.20083 0.84379 0.80877 0.83390 1.90738 1.58177 1.58131 1.34313 1.21819 1.00534 0.94291 0.98752 1.21561 0.80909 1.00469 0.98000 0.91963 0.88646 0.88628 0.89109 0.91387 0.91115 0.90950 0.88798 0.83086 0.89961 0.90306 0.89305 0.90785 0.91562 0.90540 0.76587 0.90037 0.91677 0.91680 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 10 C -0.12 -2.41 4.50 36.00 0.16 -2.25 16 11 C 0.53 10.06 7.72 -10.99 -0.08 9.97 16 12 O -0.52 -11.70 15.27 5.56 0.08 -11.62 16 13 N -0.62 -8.90 2.98 -173.00 -0.52 -9.41 16 14 C 0.11 1.25 6.31 -3.93 -0.02 1.23 16 15 C -0.17 -1.50 5.30 -26.83 -0.14 -1.64 16 16 C 0.09 0.87 1.95 -67.67 -0.13 0.74 16 17 N -0.67 -5.52 5.95 -101.14 -0.60 -6.12 16 18 C 0.08 0.53 2.59 -69.08 -0.18 0.35 16 19 H 0.08 0.53 7.10 -51.93 -0.37 0.16 16 20 C -0.13 -0.51 5.29 -26.52 -0.14 -0.65 16 21 C -0.14 -0.34 6.02 -26.60 -0.16 -0.50 16 22 C 0.11 0.31 7.17 -4.48 -0.03 0.28 16 23 N -0.72 -4.33 5.45 -61.38 -0.33 -4.67 16 24 C 0.53 4.83 7.44 -11.87 -0.09 4.75 16 25 O -0.54 -7.21 15.81 5.56 0.09 -7.12 16 26 C -0.12 -1.29 5.69 -26.59 -0.15 -1.44 16 27 C 0.11 1.49 6.44 -3.69 -0.02 1.46 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.10 1.77 7.68 -51.92 -0.40 1.37 16 30 H 0.10 1.79 7.95 -51.91 -0.41 1.37 16 31 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.51 7.40 -51.93 -0.38 0.13 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.09 6.48 -51.93 -0.34 0.75 16 36 H 0.35 2.40 8.11 -39.30 -0.32 2.08 16 37 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.07 0.21 8.12 -51.93 -0.42 -0.22 16 41 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.40 2.17 8.80 -40.82 -0.36 1.81 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -36.69 380.94 -9.73 -46.42 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.48 Total: 0.85 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.78 Total: 0.21 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.68 Total: -46.09 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.69 -9.73 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.308 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds