Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46883 * 270.00155 * 3 2 1 5 5 H 1.48506 * 109.46691 * 29.99836 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99883 * 3 2 1 7 7 C 1.38801 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63272 * 359.71537 * 13 11 10 15 15 C 1.52764 * 109.01053 * 233.58920 * 14 13 11 16 16 C 1.53039 * 109.37787 * 305.58433 * 15 14 13 17 17 N 1.46904 * 109.45691 * 181.25655 * 16 15 14 18 18 C 1.46904 * 110.99271 * 84.93486 * 17 16 15 19 19 H 1.09000 * 109.40265 * 324.82580 * 18 17 16 20 20 C 1.53072 * 109.39795 * 204.99780 * 18 17 16 21 21 C 1.53343 * 108.42764 * 190.97240 * 20 18 17 22 22 C 1.52918 * 108.67525 * 67.52978 * 21 20 18 23 23 N 1.45761 * 110.48765 * 309.24913 * 22 21 20 24 24 C 1.33346 * 124.10446 * 19.07291 * 23 22 21 25 25 O 1.21282 * 118.24434 * 177.77414 * 24 23 22 26 26 C 1.53040 * 109.53898 * 61.24336 * 16 15 14 27 27 C 1.46924 * 120.63488 * 179.97438 * 13 11 10 28 28 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 1.09005 * 109.58391 * 353.42022 * 14 13 11 32 32 H 1.08997 * 109.58907 * 113.84263 * 14 13 11 33 33 H 1.08993 * 109.56511 * 185.54996 * 15 14 13 34 34 H 1.09000 * 109.36061 * 65.49472 * 15 14 13 35 35 H 1.08994 * 109.46486 * 301.21986 * 16 15 14 36 36 H 1.00890 * 111.00316 * 320.98309 * 17 16 15 37 37 H 1.09001 * 109.67369 * 310.70566 * 20 18 17 38 38 H 1.08997 * 109.67301 * 71.23820 * 20 18 17 39 39 H 1.09001 * 109.60403 * 187.28880 * 21 20 18 40 40 H 1.09002 * 109.60221 * 307.77609 * 21 20 18 41 41 H 1.09005 * 109.29960 * 69.55968 * 22 21 20 42 42 H 1.09002 * 109.30379 * 189.14033 * 22 21 20 43 43 H 0.97005 * 117.94192 * 199.07182 * 23 22 21 44 44 H 1.09000 * 109.49582 * 178.68345 * 26 16 15 45 45 H 1.08997 * 109.50051 * 58.58400 * 26 16 15 46 46 H 1.09001 * 109.58957 * 246.15724 * 27 13 11 47 47 H 1.09007 * 109.57990 * 6.43473 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7722 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 5.1243 -5.6390 0.0058 15 6 5.4853 -6.5626 1.1678 16 6 6.9637 -6.9460 1.0714 17 7 7.3054 -7.8582 2.1710 18 6 6.9853 -9.2484 1.8204 19 1 6.0834 -9.2690 1.2087 20 6 6.7501 -10.0543 3.1003 21 6 6.6922 -11.5419 2.7327 22 6 8.0790 -11.9852 2.2653 23 7 8.5876 -11.0775 1.2445 24 6 8.1257 -9.8426 1.0448 25 8 8.6551 -9.1629 0.1911 26 6 7.8267 -5.6858 1.1677 27 6 7.4922 -4.7523 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4313 0.8904 30 1 3.6434 -3.4317 -0.8896 31 1 4.1010 -5.2837 0.1276 32 1 5.2142 -6.1853 -0.9331 33 1 4.8723 -7.4627 1.1227 34 1 5.3043 -6.0454 2.1101 35 1 7.1491 -7.4411 0.1182 36 1 6.8425 -7.5848 3.0247 37 1 7.5686 -9.8806 3.7989 38 1 5.8074 -9.7520 3.5563 39 1 6.3975 -12.1233 3.6064 40 1 5.9703 -11.6923 1.9299 41 1 8.7613 -11.9899 3.1154 42 1 8.0148 -12.9907 1.8494 43 1 9.3072 -11.3915 0.6747 44 1 8.8801 -5.9619 1.1224 45 1 7.6236 -5.1769 2.1099 46 1 7.7789 -5.2250 -0.9400 47 1 8.0309 -3.8117 0.1145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199387607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = -101.002159 kcal Electronic energy + Delta-G solvation = -27590.650887 eV Core-core repulsion = 23704.802711 eV Total energy + Delta-G solvation = -3885.848175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.57618 -41.04282 -38.87848 -37.43210 -36.37332 -34.67615 -33.73353 -32.64027 -31.57299 -30.50228 -28.80895 -27.85306 -25.42183 -24.70738 -24.28139 -23.26270 -21.92200 -20.55074 -19.96911 -19.53236 -18.28633 -18.23806 -17.28949 -17.17351 -16.93273 -16.83572 -16.66626 -16.06703 -15.73309 -15.44375 -15.24655 -15.03518 -14.99660 -14.92058 -14.77563 -14.39866 -14.27481 -13.98304 -13.53958 -13.44660 -13.32564 -13.09413 -13.01935 -12.88869 -12.63818 -12.28896 -12.23840 -12.11995 -11.95875 -11.86857 -11.76934 -11.45208 -11.17585 -10.95360 -10.73503 -10.52392 -9.97762 -9.78502 -9.40884 -9.01026 -8.51884 -6.22800 0.96415 1.30974 1.45517 1.50077 1.53425 1.66829 2.04708 2.24771 2.36974 2.67777 2.86275 3.08119 3.49266 3.63803 3.69264 3.80424 3.91276 3.96006 4.01864 4.06985 4.16602 4.23548 4.29289 4.29972 4.37575 4.44998 4.56283 4.59637 4.70168 4.75786 4.79765 4.86910 4.90734 4.98434 5.06205 5.08235 5.09657 5.23680 5.33283 5.52643 5.70620 5.86532 5.95885 6.10901 6.23554 6.34300 6.49927 6.93420 7.06174 7.31318 8.60288 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.002091 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.779751 B =13384.553570 C =14056.793087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.526 4.526 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.104 4.104 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.604 5.604 14 C 0.103 3.897 15 C -0.156 4.156 16 C 0.099 3.901 17 N -0.674 5.674 18 C 0.077 3.923 19 H 0.083 0.917 20 C -0.122 4.122 21 C -0.132 4.132 22 C 0.103 3.897 23 N -0.718 5.718 24 C 0.517 3.483 25 O -0.592 6.592 26 C -0.106 4.106 27 C 0.114 3.886 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.358 0.642 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.399 0.601 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -31.211 7.978 35.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.255 4.255 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.338 5.338 14 C -0.020 4.020 15 C -0.195 4.195 16 C -0.011 4.011 17 N -0.307 5.307 18 C -0.036 4.036 19 H 0.101 0.899 20 C -0.160 4.160 21 C -0.170 4.170 22 C -0.020 4.020 23 N -0.369 5.369 24 C 0.304 3.696 25 O -0.472 6.472 26 C -0.145 4.145 27 C -0.009 4.009 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.235 0.765 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.373 -29.412 7.539 34.496 hybrid contribution -1.611 -0.261 -0.415 1.684 sum 14.762 -29.674 7.124 33.900 Atomic orbital electron populations 1.70005 1.07180 1.29000 1.49112 1.25534 0.95282 1.02156 0.92944 0.85891 0.80678 0.79768 0.80179 1.18796 1.18209 1.16235 1.22429 0.90013 0.96735 1.58229 0.91773 1.84768 1.06693 1.06149 1.97557 1.23267 0.95678 0.99506 1.07051 1.20059 0.89624 0.82898 0.75314 1.90670 1.59331 1.43384 1.50946 1.48088 1.07837 1.04912 1.72920 1.21855 0.93644 0.86440 1.00051 1.22553 0.97780 1.00224 0.98973 1.21504 0.92066 0.92442 0.95120 1.60111 1.64261 1.00086 1.06203 1.21394 0.94283 0.89822 0.98100 0.89912 1.21879 1.04195 0.94950 0.94992 1.21895 0.96197 0.95401 1.03528 1.21673 0.96002 0.93272 0.91068 1.45593 1.39303 1.14323 1.37670 1.20587 0.84691 0.81411 0.82959 1.90710 1.60101 1.59759 1.36635 1.21705 1.00666 0.94621 0.97459 1.21634 0.79769 1.00056 0.99445 0.91351 0.86875 0.87099 0.88865 0.89752 0.88467 0.90978 0.90346 0.82017 0.90315 0.88797 0.87038 0.90786 0.90586 0.88431 0.76534 0.90514 0.92116 0.90658 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 2 C 0.05 2.74 5.50 84.86 0.47 3.20 16 3 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 4 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.93 6.74 99.48 0.67 -11.26 16 7 C -0.53 -30.79 10.04 67.95 0.68 -30.10 16 8 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 10 C -0.10 -4.08 4.50 71.24 0.32 -3.75 16 11 C 0.53 19.87 7.72 87.66 0.68 20.54 16 12 O -0.56 -25.70 15.27 -3.04 -0.05 -25.75 16 13 N -0.60 -16.77 2.98 -819.64 -2.44 -19.22 16 14 C 0.10 2.06 6.31 86.22 0.54 2.61 16 15 C -0.16 -2.40 5.30 30.53 0.16 -2.24 16 16 C 0.10 1.78 1.95 44.94 0.09 1.87 16 17 N -0.67 -10.04 5.95 -473.89 -2.82 -12.86 16 18 C 0.08 0.91 2.59 44.03 0.11 1.03 16 19 H 0.08 0.91 7.10 -2.39 -0.02 0.90 16 20 C -0.12 -0.62 5.29 30.73 0.16 -0.46 16 21 C -0.13 -0.22 6.02 30.68 0.18 -0.03 16 22 C 0.10 0.29 7.17 86.49 0.62 0.91 16 23 N -0.72 -7.54 5.45 -467.30 -2.55 -10.09 16 24 C 0.52 8.99 7.44 87.72 0.65 9.64 16 25 O -0.59 -15.98 15.81 -3.04 -0.05 -16.03 16 26 C -0.11 -2.31 5.69 30.68 0.17 -2.13 16 27 C 0.11 2.94 6.44 86.38 0.56 3.50 16 28 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.11 4.03 7.68 -2.39 -0.02 4.01 16 30 H 0.11 4.00 7.95 -2.39 -0.02 3.98 16 31 H 0.09 1.86 5.94 -2.38 -0.01 1.85 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.05 7.40 -2.39 -0.02 1.04 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.74 6.48 -2.39 -0.02 1.72 16 36 H 0.36 4.11 8.11 -89.70 -0.73 3.38 16 37 H 0.08 0.49 8.13 -2.39 -0.02 0.47 16 38 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.07 0.17 8.12 -2.39 -0.02 0.15 16 41 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 42 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.40 4.00 8.80 -92.70 -0.82 3.18 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 2.26 7.00 -2.38 -0.02 2.24 16 Total: -1.00 -81.28 380.94 -1.92 -83.20 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.59 Total: 14.43 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.40 Total: 4.58 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -7.50 Total: -97.55 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.09 Total: -41.77 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -81.28 -1.92 -83.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.802 kcal (2) G-P(sol) polarization free energy of solvation -81.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds