Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00295 * 2 1 4 4 H 1.48502 * 109.47334 * 240.00120 * 3 2 1 5 5 H 1.48503 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47210 * 120.00228 * 3 2 1 7 7 C 1.38803 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00527 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99968 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99853 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.63060 * 180.02562 * 13 11 10 15 15 C 1.53189 * 108.77371 * 233.62771 * 14 13 11 16 16 C 1.53043 * 109.31301 * 305.36213 * 15 14 13 17 17 N 1.46905 * 109.46127 * 181.38497 * 16 15 14 18 18 C 1.46890 * 111.00079 * 154.97445 * 17 16 15 19 19 H 1.09005 * 109.40521 * 34.82842 * 18 17 16 20 20 C 1.53073 * 109.33490 * 154.61582 * 18 17 16 21 21 C 1.53335 * 108.42682 * 168.98439 * 20 18 17 22 22 C 1.53103 * 108.53227 * 292.30795 * 21 20 18 23 23 N 1.45754 * 110.38269 * 51.11823 * 22 21 20 24 24 C 1.33358 * 124.10403 * 340.45956 * 23 22 21 25 25 O 1.21287 * 118.24068 * 182.47960 * 24 23 22 26 26 C 1.53043 * 109.52545 * 61.37251 * 16 15 14 27 27 C 1.46930 * 120.63038 * 0.02562 * 13 11 10 28 28 H 0.97005 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47218 * 59.99450 * 10 9 7 30 30 H 1.09000 * 109.46565 * 299.99449 * 10 9 7 31 31 H 1.09000 * 109.58903 * 113.84364 * 14 13 11 32 32 H 1.08993 * 109.58421 * 353.41154 * 14 13 11 33 33 H 1.09000 * 109.50212 * 185.40867 * 15 14 13 34 34 H 1.09000 * 109.52773 * 65.32997 * 15 14 13 35 35 H 1.08994 * 109.46243 * 301.35648 * 16 15 14 36 36 H 1.00903 * 110.99998 * 278.92859 * 17 16 15 37 37 H 1.09004 * 109.66999 * 288.71977 * 20 18 17 38 38 H 1.08997 * 109.67232 * 49.25049 * 20 18 17 39 39 H 1.09003 * 109.60436 * 52.22691 * 21 20 18 40 40 H 1.09000 * 109.60463 * 172.70816 * 21 20 18 41 41 H 1.09005 * 109.49478 * 290.74854 * 22 21 20 42 42 H 1.09000 * 109.20815 * 171.30600 * 22 21 20 43 43 H 0.97001 * 117.94909 * 160.75061 * 23 22 21 44 44 H 1.09000 * 109.49999 * 58.57977 * 26 16 15 45 45 H 1.09000 * 109.49791 * 178.67458 * 26 16 15 46 46 H 1.09001 * 109.58337 * 246.15524 * 27 13 11 47 47 H 1.09001 * 109.58693 * 6.44130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3028 -0.0018 12 8 0.7909 -5.5023 -0.0019 13 7 2.8439 -6.3432 -0.0020 14 6 2.3438 -7.7247 -0.0029 15 6 2.9842 -8.4817 1.1647 16 6 4.5072 -8.3645 1.0694 17 7 5.1258 -9.1171 2.1690 18 6 6.4897 -9.5353 1.8188 19 1 6.9569 -8.7673 1.2023 20 6 7.3060 -9.7255 3.0996 21 6 8.6235 -10.4207 2.7359 22 6 8.3108 -11.8491 2.2821 23 7 7.2738 -11.8409 1.2579 24 6 6.4344 -10.8253 1.0519 25 8 5.5811 -10.9500 0.1991 26 6 4.9140 -6.8924 1.1669 27 6 4.2957 -6.1174 -0.0012 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7318 0.8891 30 1 3.1249 -3.7311 -0.8909 31 1 2.6101 -8.2091 -0.9423 32 1 1.2602 -7.7211 0.1144 33 1 2.6966 -9.5321 1.1190 34 1 2.6447 -8.0524 2.1073 35 1 4.8438 -8.7719 0.1162 36 1 5.1204 -8.5796 3.0230 37 1 7.5152 -8.7547 3.5490 38 1 6.7472 -10.3431 3.8027 39 1 9.1139 -9.8758 1.9292 40 1 9.2749 -10.4499 3.6094 41 1 7.9699 -12.4355 3.1354 42 1 9.2150 -12.3022 1.8756 43 1 7.1860 -12.6248 0.6935 44 1 4.5560 -6.4776 2.1092 45 1 6.0001 -6.8114 1.1226 46 1 4.7209 -6.4710 -0.9406 47 1 4.4999 -5.0530 0.1146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199387608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = -72.728056 kcal Electronic energy + Delta-G solvation = -27546.852907 eV Core-core repulsion = 23662.230788 eV Total energy + Delta-G solvation = -3884.622118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87348 -39.79542 -37.71789 -36.85916 -35.41566 -32.89054 -32.41400 -31.62175 -30.79729 -29.10035 -28.02505 -25.49054 -24.70647 -23.95156 -23.29442 -22.71673 -20.86727 -19.66755 -18.94913 -17.73565 -17.67075 -16.78721 -16.65960 -16.23575 -15.53438 -15.30056 -15.25764 -14.90961 -14.79213 -14.57287 -14.42218 -14.06336 -13.99988 -13.81006 -13.75917 -13.19698 -12.83478 -12.66424 -12.60140 -12.29642 -12.11560 -11.91181 -11.82358 -11.66318 -11.37714 -11.31907 -11.03382 -11.03205 -10.95298 -10.75742 -10.60976 -10.05308 -9.79360 -9.47575 -9.29346 -9.04633 -8.76253 -8.44178 -8.19933 -6.47863 -6.19802 -3.90245 2.32242 2.84782 2.99664 3.11586 3.23876 3.26973 3.30016 3.63246 3.70113 4.03902 4.10782 4.21735 4.27967 4.37356 4.57140 4.66905 4.72633 4.78629 4.91132 4.97773 5.02767 5.14476 5.14927 5.19129 5.22333 5.25529 5.30438 5.39123 5.49879 5.56286 5.61699 5.67083 5.68156 5.85098 5.90182 6.01570 6.05925 6.13985 6.17625 6.38495 6.63504 6.74209 6.89990 7.06065 7.60156 7.64445 7.92461 8.36341 8.63324 9.25017 10.87521 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002093 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.487563 B =13376.095035 C =14284.449036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.071 0.929 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.619 5.619 14 C 0.114 3.886 15 C -0.115 4.115 16 C 0.089 3.911 17 N -0.667 5.667 18 C 0.076 3.924 19 H 0.078 0.922 20 C -0.128 4.128 21 C -0.135 4.135 22 C 0.110 3.890 23 N -0.724 5.724 24 C 0.527 3.473 25 O -0.537 6.537 26 C -0.166 4.166 27 C 0.114 3.886 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.399 0.601 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.915 -23.945 6.738 33.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.392 6.392 13 N -0.356 5.356 14 C -0.009 4.009 15 C -0.154 4.154 16 C -0.020 4.020 17 N -0.299 5.299 18 C -0.037 4.037 19 H 0.096 0.904 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.015 4.015 23 N -0.378 5.378 24 C 0.313 3.687 25 O -0.413 6.413 26 C -0.206 4.206 27 C -0.011 4.011 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.234 0.766 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.232 -24.582 6.257 31.833 hybrid contribution 2.725 1.766 -0.019 3.247 sum 21.957 -22.817 6.238 32.274 Atomic orbital electron populations 1.70011 1.05935 1.27529 1.46753 1.24991 0.95032 0.98996 0.94589 0.86231 0.79239 0.81298 0.78755 1.19954 1.20812 1.19978 1.22815 0.94821 0.91700 1.59032 0.91055 1.85416 1.05041 0.96258 1.96683 1.23548 1.06394 0.95565 1.04551 1.20308 0.86237 0.86177 0.75031 1.90687 1.15181 1.85234 1.48067 1.48117 1.06113 1.05985 1.75374 1.21537 1.00729 0.80820 0.97863 1.21818 0.93671 1.01076 0.98845 1.21723 0.95223 0.90005 0.95055 1.60248 1.16442 1.46785 1.06381 1.21327 0.90912 0.94725 0.96771 0.90403 1.21891 0.95644 1.02349 0.96761 1.21890 0.97707 0.95088 1.02628 1.21408 0.90844 0.97777 0.91439 1.45495 1.35060 1.19609 1.37641 1.20089 0.80153 0.85168 0.83321 1.90742 1.34783 1.81544 1.34221 1.22696 1.00404 0.97305 1.00157 1.21590 0.80361 1.01265 0.97839 0.92141 0.89411 0.89365 0.91785 0.88698 0.90084 0.91681 0.88879 0.83100 0.90341 0.89955 0.90768 0.89351 0.91564 0.90564 0.76602 0.90963 0.91286 0.91547 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.12 4.50 36.01 0.16 -2.96 16 11 C 0.53 10.61 7.72 -10.99 -0.08 10.52 16 12 O -0.52 -12.29 15.27 5.56 0.08 -12.21 16 13 N -0.62 -9.36 2.97 -172.75 -0.51 -9.88 16 14 C 0.11 1.56 6.43 -3.71 -0.02 1.54 16 15 C -0.12 -1.35 5.69 -26.61 -0.15 -1.50 16 16 C 0.09 0.90 1.95 -67.67 -0.13 0.77 16 17 N -0.67 -5.70 5.95 -101.14 -0.60 -6.30 16 18 C 0.08 0.54 2.59 -69.09 -0.18 0.36 16 19 H 0.08 0.54 7.10 -51.93 -0.37 0.17 16 20 C -0.13 -0.53 5.28 -26.52 -0.14 -0.67 16 21 C -0.13 -0.35 6.03 -26.50 -0.16 -0.51 16 22 C 0.11 0.32 7.17 -4.39 -0.03 0.29 16 23 N -0.72 -4.43 5.45 -61.29 -0.33 -4.77 16 24 C 0.53 4.93 7.44 -11.87 -0.09 4.84 16 25 O -0.54 -7.33 15.85 5.55 0.09 -7.24 16 26 C -0.17 -1.55 5.31 -26.60 -0.14 -1.69 16 27 C 0.11 1.32 6.34 -3.70 -0.02 1.30 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 30 H 0.09 1.71 7.94 -51.92 -0.41 1.30 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.11 6.52 -51.93 -0.34 0.77 16 36 H 0.35 2.49 8.10 -39.29 -0.32 2.17 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.21 8.12 -51.93 -0.42 -0.21 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 43 H 0.40 2.22 8.80 -40.82 -0.36 1.86 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.52 7.41 -51.93 -0.38 0.13 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -37.13 383.74 -10.23 -47.37 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.45 Total: 1.06 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.79 Total: -0.78 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.71 Total: -46.57 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.13 -10.23 -47.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.362 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds