Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00295 * 2 1 4 4 H 1.48502 * 109.47334 * 240.00120 * 3 2 1 5 5 H 1.48503 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47210 * 120.00228 * 3 2 1 7 7 C 1.38803 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00527 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99690 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99968 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99853 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.63060 * 180.02562 * 13 11 10 15 15 C 1.53189 * 108.77371 * 233.62771 * 14 13 11 16 16 C 1.53043 * 109.31301 * 305.36213 * 15 14 13 17 17 N 1.46905 * 109.46127 * 181.38497 * 16 15 14 18 18 C 1.46890 * 111.00079 * 154.97445 * 17 16 15 19 19 H 1.09005 * 109.40521 * 34.82842 * 18 17 16 20 20 C 1.53073 * 109.33490 * 154.61582 * 18 17 16 21 21 C 1.53335 * 108.42682 * 168.98439 * 20 18 17 22 22 C 1.53103 * 108.53227 * 292.30795 * 21 20 18 23 23 N 1.45754 * 110.38269 * 51.11823 * 22 21 20 24 24 C 1.33358 * 124.10403 * 340.45956 * 23 22 21 25 25 O 1.21287 * 118.24068 * 182.47960 * 24 23 22 26 26 C 1.53043 * 109.52545 * 61.37251 * 16 15 14 27 27 C 1.46930 * 120.63038 * 0.02562 * 13 11 10 28 28 H 0.97005 * 119.99772 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47218 * 59.99450 * 10 9 7 30 30 H 1.09000 * 109.46565 * 299.99449 * 10 9 7 31 31 H 1.09000 * 109.58903 * 113.84364 * 14 13 11 32 32 H 1.08993 * 109.58421 * 353.41154 * 14 13 11 33 33 H 1.09000 * 109.50212 * 185.40867 * 15 14 13 34 34 H 1.09000 * 109.52773 * 65.32997 * 15 14 13 35 35 H 1.08994 * 109.46243 * 301.35648 * 16 15 14 36 36 H 1.00903 * 110.99998 * 278.92859 * 17 16 15 37 37 H 1.09004 * 109.66999 * 288.71977 * 20 18 17 38 38 H 1.08997 * 109.67232 * 49.25049 * 20 18 17 39 39 H 1.09003 * 109.60436 * 52.22691 * 21 20 18 40 40 H 1.09000 * 109.60463 * 172.70816 * 21 20 18 41 41 H 1.09005 * 109.49478 * 290.74854 * 22 21 20 42 42 H 1.09000 * 109.20815 * 171.30600 * 22 21 20 43 43 H 0.97001 * 117.94909 * 160.75061 * 23 22 21 44 44 H 1.09000 * 109.49999 * 58.57977 * 26 16 15 45 45 H 1.09000 * 109.49791 * 178.67458 * 26 16 15 46 46 H 1.09001 * 109.58337 * 246.15524 * 27 13 11 47 47 H 1.09001 * 109.58693 * 6.44130 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3028 -0.0018 12 8 0.7909 -5.5023 -0.0019 13 7 2.8439 -6.3432 -0.0020 14 6 2.3438 -7.7247 -0.0029 15 6 2.9842 -8.4817 1.1647 16 6 4.5072 -8.3645 1.0694 17 7 5.1258 -9.1171 2.1690 18 6 6.4897 -9.5353 1.8188 19 1 6.9569 -8.7673 1.2023 20 6 7.3060 -9.7255 3.0996 21 6 8.6235 -10.4207 2.7359 22 6 8.3108 -11.8491 2.2821 23 7 7.2738 -11.8409 1.2579 24 6 6.4344 -10.8253 1.0519 25 8 5.5811 -10.9500 0.1991 26 6 4.9140 -6.8924 1.1669 27 6 4.2957 -6.1174 -0.0012 28 1 -0.4850 0.8401 0.0004 29 1 3.1237 -3.7318 0.8891 30 1 3.1249 -3.7311 -0.8909 31 1 2.6101 -8.2091 -0.9423 32 1 1.2602 -7.7211 0.1144 33 1 2.6966 -9.5321 1.1190 34 1 2.6447 -8.0524 2.1073 35 1 4.8438 -8.7719 0.1162 36 1 5.1204 -8.5796 3.0230 37 1 7.5152 -8.7547 3.5490 38 1 6.7472 -10.3431 3.8027 39 1 9.1139 -9.8758 1.9292 40 1 9.2749 -10.4499 3.6094 41 1 7.9699 -12.4355 3.1354 42 1 9.2150 -12.3022 1.8756 43 1 7.1860 -12.6248 0.6935 44 1 4.5560 -6.4776 2.1092 45 1 6.0001 -6.8114 1.1226 46 1 4.7209 -6.4710 -0.9406 47 1 4.4999 -5.0530 0.1146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199387608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -101.432739 kcal Electronic energy + Delta-G solvation = -27548.097635 eV Core-core repulsion = 23662.230788 eV Total energy + Delta-G solvation = -3885.866847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.55741 -41.01061 -38.85016 -37.42455 -36.35623 -34.58278 -33.71905 -32.60920 -31.54020 -30.43964 -28.78985 -27.66215 -25.40101 -24.69681 -24.26954 -23.25358 -21.89237 -20.51429 -19.95787 -19.50642 -18.24431 -18.21655 -17.27360 -16.97046 -16.88663 -16.84944 -16.61871 -16.05219 -15.80617 -15.46302 -15.22648 -15.01991 -14.97705 -14.78836 -14.47778 -14.36480 -14.26723 -13.94264 -13.48709 -13.39081 -13.17093 -13.05267 -12.88384 -12.85663 -12.61570 -12.29168 -12.25289 -12.11225 -11.95305 -11.77054 -11.72997 -11.44781 -11.12493 -10.90278 -10.73182 -10.26711 -9.97610 -9.75645 -9.40233 -8.67741 -8.33856 -6.12808 1.25007 1.44426 1.45709 1.55311 1.55677 1.67202 2.08669 2.27818 2.37354 2.99956 3.08309 3.24601 3.60886 3.65758 3.70937 3.81811 3.91839 3.97591 4.02471 4.07806 4.22389 4.25474 4.30044 4.30147 4.41533 4.46531 4.56538 4.60304 4.70632 4.76031 4.80084 4.87376 4.90990 4.99479 5.06436 5.08452 5.09910 5.24108 5.33624 5.41553 5.55529 5.86896 5.96355 6.19834 6.27650 6.34630 6.50329 7.06726 7.12498 7.31731 8.75148 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002093 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.487563 B =13376.095035 C =14284.449036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.121 4.121 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.605 5.605 14 C 0.113 3.887 15 C -0.106 4.106 16 C 0.100 3.900 17 N -0.674 5.674 18 C 0.077 3.923 19 H 0.084 0.916 20 C -0.123 4.123 21 C -0.132 4.132 22 C 0.103 3.897 23 N -0.718 5.718 24 C 0.517 3.483 25 O -0.592 6.592 26 C -0.154 4.154 27 C 0.104 3.896 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.358 0.642 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.399 0.601 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.223 -23.963 7.890 36.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.272 4.272 11 C 0.320 3.680 12 O -0.447 6.447 13 N -0.340 5.340 14 C -0.010 4.010 15 C -0.145 4.145 16 C -0.010 4.010 17 N -0.307 5.307 18 C -0.036 4.036 19 H 0.102 0.898 20 C -0.161 4.161 21 C -0.170 4.170 22 C -0.020 4.020 23 N -0.369 5.369 24 C 0.303 3.697 25 O -0.472 6.472 26 C -0.194 4.194 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.180 0.820 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.234 0.766 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.102 0.898 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.639 -24.657 7.447 34.960 hybrid contribution 1.478 1.552 -0.373 2.175 sum 25.117 -23.105 7.073 34.853 Atomic orbital electron populations 1.70188 1.08028 1.28667 1.47907 1.26164 0.95992 1.03405 0.93737 0.84984 0.77780 0.75541 0.79557 1.18622 1.20480 1.18478 1.23154 0.95337 0.91811 1.58993 0.89793 1.85640 1.10667 0.99336 1.97029 1.23355 1.03372 0.94153 1.06363 1.20185 0.85981 0.86723 0.75135 1.90671 1.17325 1.85812 1.50878 1.48115 1.07367 1.05344 1.73124 1.21605 0.99651 0.80277 0.99437 1.21700 0.95208 1.00161 0.97383 1.21490 0.93728 0.90735 0.95091 1.60100 1.17747 1.46689 1.06183 1.21395 0.90388 0.93596 0.98186 0.89806 1.21890 0.95774 1.03420 0.94969 1.21925 0.97116 0.94321 1.03601 1.21702 0.90660 0.98691 0.90990 1.45591 1.34793 1.18762 1.37750 1.20602 0.79820 0.86365 0.82875 1.90715 1.37203 1.82724 1.36594 1.22623 1.01961 0.95942 0.98875 1.21947 0.77866 1.02180 0.99924 0.92010 0.87279 0.87478 0.90694 0.91058 0.90568 0.92240 0.90365 0.82011 0.88749 0.90363 0.90698 0.87048 0.90627 0.88414 0.76562 0.91041 0.88328 0.89807 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -5.00 4.50 71.24 0.32 -4.68 16 11 C 0.53 21.32 7.72 87.66 0.68 22.00 16 12 O -0.57 -28.18 15.27 -3.03 -0.05 -28.23 16 13 N -0.61 -17.94 2.97 -818.86 -2.43 -20.37 16 14 C 0.11 3.15 6.43 86.36 0.56 3.70 16 15 C -0.11 -2.46 5.69 30.67 0.17 -2.28 16 16 C 0.10 1.87 1.95 44.94 0.09 1.96 16 17 N -0.67 -10.38 5.95 -473.90 -2.82 -13.20 16 18 C 0.08 0.93 2.59 44.03 0.11 1.05 16 19 H 0.08 0.93 7.10 -2.38 -0.02 0.91 16 20 C -0.12 -0.63 5.28 30.73 0.16 -0.46 16 21 C -0.13 -0.21 6.03 30.74 0.19 -0.03 16 22 C 0.10 0.30 7.17 86.55 0.62 0.92 16 23 N -0.72 -7.70 5.45 -466.99 -2.54 -10.24 16 24 C 0.52 9.14 7.44 87.71 0.65 9.80 16 25 O -0.59 -16.28 15.85 -3.05 -0.05 -16.32 16 26 C -0.15 -2.45 5.31 30.68 0.16 -2.29 16 27 C 0.10 2.16 6.34 86.37 0.55 2.70 16 28 H 0.27 15.63 8.31 -92.70 -0.77 14.85 16 29 H 0.11 4.02 7.69 -2.40 -0.02 4.00 16 30 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.34 7.00 -2.39 -0.02 2.32 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.78 6.52 -2.39 -0.02 1.77 16 36 H 0.36 4.28 8.10 -89.69 -0.73 3.55 16 37 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.08 0.50 8.12 -2.39 -0.02 0.48 16 39 H 0.07 0.16 8.12 -2.39 -0.02 0.14 16 40 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.08 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.40 4.10 8.80 -92.71 -0.82 3.28 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.10 1.06 7.41 -2.39 -0.02 1.04 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.09 1.92 5.93 -2.39 -0.01 1.90 16 Total: -1.00 -85.00 383.74 -1.91 -86.92 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.55 Total: 19.17 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.37 Total: 2.84 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -7.51 Total: -100.08 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.09 Total: -44.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -85.00 -1.91 -86.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.515 kcal (2) G-P(sol) polarization free energy of solvation -85.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds