Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99955 * 2 1 4 4 H 1.48504 * 109.47150 * 269.99892 * 3 2 1 5 5 H 1.48503 * 109.47542 * 29.99800 * 3 2 1 6 6 H 1.48501 * 109.47319 * 149.99675 * 3 2 1 7 7 C 1.37878 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47245 * 185.16745 * 9 7 2 11 11 C 1.46896 * 111.00010 * 288.32716 * 10 9 7 12 12 C 1.53237 * 109.34087 * 187.25415 * 11 10 9 13 13 N 1.47090 * 108.51905 * 306.16916 * 12 11 10 14 14 C 1.34776 * 120.88145 * 231.18542 * 13 12 11 15 15 O 1.21690 * 119.99823 * 6.17324 * 14 13 12 16 16 C 1.46705 * 120.00114 * 186.16780 * 14 13 12 17 17 C 1.36702 * 126.85265 * 19.50526 * 16 14 13 18 18 N 1.33315 * 107.83977 * 180.02562 * 17 16 14 19 19 C 1.30882 * 109.73421 * 359.73031 * 18 17 16 20 20 N 1.34737 * 109.13396 * 0.44704 * 19 18 17 21 21 C 1.40137 * 126.49940 * 179.82287 * 20 19 18 22 22 C 1.39254 * 120.48744 * 304.34490 * 21 20 19 23 23 C 1.38514 * 118.36548 * 179.97438 * 22 21 20 24 24 C 1.38273 * 119.22723 * 359.97438 * 23 22 21 25 25 N 1.31860 * 120.91146 * 359.73136 * 24 23 22 26 26 C 1.31816 * 121.79674 * 0.56275 * 25 24 23 27 27 C 1.47082 * 118.23468 * 51.45772 * 13 12 11 28 28 C 1.46898 * 110.99882 * 52.63029 * 10 9 7 29 29 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47503 * 65.16585 * 9 7 2 31 31 H 1.09006 * 109.47572 * 305.16898 * 9 7 2 32 32 H 1.08996 * 109.49562 * 67.29252 * 11 10 9 33 33 H 1.08999 * 109.48973 * 307.21254 * 11 10 9 34 34 H 1.09001 * 109.63217 * 186.46350 * 12 11 10 35 35 H 1.08998 * 109.63204 * 65.87417 * 12 11 10 36 36 H 1.08004 * 126.08538 * 0.04259 * 17 16 14 37 37 H 1.08002 * 125.43216 * 180.30359 * 19 18 17 38 38 H 1.08006 * 120.81901 * 359.97438 * 22 21 20 39 39 H 1.08000 * 120.38722 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.53870 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.66138 * 179.71345 * 26 25 24 42 42 H 1.08998 * 109.62896 * 68.25431 * 27 13 12 43 43 H 1.09005 * 109.62487 * 188.83434 * 27 13 12 44 44 H 1.09002 * 109.49113 * 292.70622 * 28 10 9 45 45 H 1.09003 * 109.49469 * 52.78018 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2008 -3.6129 0.1259 11 6 2.9704 -3.7904 -1.1127 12 6 3.8140 -5.0653 -1.0076 13 7 4.6202 -4.9923 0.2205 14 6 5.9507 -5.2049 0.1883 15 8 6.5180 -5.3499 -0.8785 16 6 6.7150 -5.2615 1.4392 17 6 6.2198 -5.4885 2.6930 18 7 7.2426 -5.4590 3.5476 19 6 8.3554 -5.2313 2.8974 20 7 8.0803 -5.0951 1.5854 21 6 9.0033 -4.8394 0.5624 22 6 9.8424 -3.7301 0.6289 23 6 10.7385 -3.5198 -0.4062 24 6 10.7707 -4.4111 -1.4629 25 7 9.9662 -5.4554 -1.4929 26 6 9.0953 -5.6892 -0.5315 27 6 3.9348 -4.6870 1.4856 28 6 3.0874 -3.4212 1.2814 29 1 -0.4850 0.8400 -0.0004 30 1 0.6960 -2.5983 -0.9323 31 1 0.5564 -2.5177 0.8404 32 1 3.6256 -2.9319 -1.2600 33 1 2.2862 -3.8755 -1.9569 34 1 4.4719 -5.1415 -1.8734 35 1 3.1589 -5.9354 -0.9642 36 1 5.1842 -5.6613 2.9463 37 1 9.3372 -5.1611 3.3418 38 1 9.7958 -3.0505 1.4670 39 1 11.4048 -2.6701 -0.3878 40 1 11.4670 -4.2517 -2.2729 41 1 8.4497 -6.5527 -0.5935 42 1 3.2911 -5.5213 1.7639 43 1 4.6726 -4.5128 2.2689 44 1 3.7409 -2.5677 1.1007 45 1 2.4881 -3.2384 2.1733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199432007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 108.006307 kcal Electronic energy + Delta-G solvation = -29827.411891 eV Core-core repulsion = 25847.475802 eV Total energy + Delta-G solvation = -3979.936088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82650 -40.31285 -39.69193 -37.52902 -35.15065 -34.38246 -32.56729 -32.45969 -31.40929 -30.24656 -29.59990 -28.14888 -25.63181 -24.42484 -24.17897 -23.49565 -23.27366 -21.80330 -21.51637 -20.42668 -19.44601 -18.04486 -17.22042 -17.00714 -16.87256 -16.35499 -15.93603 -15.62481 -15.14454 -14.81706 -14.66448 -14.46311 -14.35738 -14.20506 -14.03275 -13.69960 -13.57813 -13.50612 -13.44665 -12.77131 -12.58103 -11.99937 -11.87201 -11.22787 -11.13172 -11.07368 -11.01158 -10.83910 -10.68098 -10.57603 -10.30578 -10.24036 -9.93911 -9.84024 -9.78743 -9.67606 -9.22095 -8.85742 -8.52222 -8.49328 -7.32086 -6.10910 -4.20307 0.38392 0.81704 1.22149 2.07233 2.58666 3.04087 3.20976 3.21620 3.28944 3.31342 3.35936 4.14281 4.23936 4.28244 4.33877 4.35359 4.41928 4.57068 4.71550 4.87024 4.97075 5.03687 5.19345 5.25137 5.28688 5.42109 5.48269 5.55229 5.58145 5.67017 5.74641 5.79894 5.93494 6.02874 6.08036 6.22341 6.36560 6.55653 6.62896 6.65073 6.80727 7.14055 7.40750 7.43749 7.55272 7.56143 7.81053 7.89563 8.10848 8.13422 8.19735 8.89293 9.47183 10.94366 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.003253 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.908035 B = 8605.739518 C = 9217.696289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.048 3.952 12 C 0.120 3.880 13 N -0.587 5.587 14 C 0.587 3.413 15 O -0.548 6.548 16 C -0.071 4.071 17 C 0.031 3.969 18 N -0.487 5.487 19 C 0.212 3.788 20 N -0.382 5.382 21 C 0.050 3.950 22 C -0.063 4.063 23 C -0.168 4.168 24 C 0.111 3.889 25 N -0.472 5.472 26 C 0.164 3.836 27 C 0.079 3.921 28 C 0.052 3.948 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.199 0.801 37 H 0.214 0.786 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.287 -10.734 3.358 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.081 4.081 12 C -0.002 4.002 13 N -0.319 5.319 14 C 0.375 3.625 15 O -0.427 6.427 16 C -0.185 4.185 17 C -0.121 4.121 18 N -0.204 5.204 19 C -0.068 4.068 20 N -0.061 5.061 21 C -0.043 4.043 22 C -0.090 4.090 23 C -0.188 4.188 24 C -0.046 4.046 25 N -0.181 5.181 26 C 0.005 3.995 27 C -0.043 4.043 28 C -0.077 4.077 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.230 0.770 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.063 0.937 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.185 -11.778 2.899 22.698 hybrid contribution 0.782 2.753 -0.191 2.868 sum 19.967 -9.025 2.709 22.079 Atomic orbital electron populations 1.69932 1.05973 1.26947 1.49844 1.24939 0.94750 0.99114 0.94775 0.86664 0.79888 0.83687 0.78202 1.20612 1.20988 1.20070 1.21722 0.93225 0.92119 1.52099 0.92658 1.19773 0.90702 0.85288 0.97988 1.62516 1.16875 1.45399 1.01638 1.22270 0.96149 0.95240 0.94456 1.21899 0.93098 0.99160 0.86086 1.47825 1.05632 1.67898 1.10535 1.16751 0.81924 0.77393 0.86426 1.90807 1.68973 1.52066 1.30884 1.20977 0.83312 1.16751 0.97510 1.23292 0.99589 1.02045 0.87180 1.70254 0.97757 1.19594 1.32776 1.25316 1.00461 1.02456 0.78600 1.42563 1.05191 1.51039 1.07273 1.18734 0.94860 0.98477 0.92193 1.21583 0.93896 0.94077 0.99471 1.22073 1.00306 1.01681 0.94749 1.23017 0.95348 0.89353 0.96881 1.67867 1.04684 1.19990 1.25536 1.22897 0.92511 0.97236 0.86828 1.22961 0.96496 0.99365 0.85488 1.22310 0.95221 0.94268 0.95887 0.92705 0.95394 0.94382 0.94238 0.90200 0.89288 0.90773 0.78423 0.77005 0.84009 0.83710 0.81952 0.81857 0.90277 0.88132 0.93670 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.55 -14.76 7.79 -34.44 -0.27 -15.03 16 8 H 0.06 1.49 5.90 -52.49 -0.31 1.18 16 9 C 0.19 4.61 5.18 -4.97 -0.03 4.59 16 10 N -0.54 -10.79 4.83 -235.47 -1.14 -11.93 16 11 C 0.05 0.89 5.34 -3.70 -0.02 0.87 16 12 C 0.12 1.85 6.61 -3.60 -0.02 1.83 16 13 N -0.59 -8.94 3.00 -173.71 -0.52 -9.46 16 14 C 0.59 9.22 7.61 -12.84 -0.10 9.13 16 15 O -0.55 -9.71 12.96 5.20 0.07 -9.64 16 16 C -0.07 -0.97 6.50 -82.07 -0.53 -1.51 16 17 C 0.03 0.38 9.62 -17.46 -0.17 0.21 16 18 N -0.49 -5.98 11.20 -14.36 -0.16 -6.14 16 19 C 0.21 2.18 12.32 -90.33 -1.11 1.07 16 20 N -0.38 -4.59 2.87 -58.53 -0.17 -4.76 16 21 C 0.05 0.59 5.60 -83.47 -0.47 0.12 16 22 C -0.06 -0.58 9.93 -39.10 -0.39 -0.97 16 23 C -0.17 -1.31 10.11 -39.47 -0.40 -1.71 16 24 C 0.11 1.01 11.18 -17.53 -0.20 0.81 16 25 N -0.47 -5.81 10.35 -13.10 -0.14 -5.95 16 26 C 0.16 2.10 8.91 -17.34 -0.15 1.94 16 27 C 0.08 1.10 5.32 -3.37 -0.02 1.08 16 28 C 0.05 0.94 5.04 -3.47 -0.02 0.93 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.83 7.35 -51.93 -0.38 0.45 16 33 H 0.08 1.44 7.97 -51.93 -0.41 1.02 16 34 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.20 2.04 5.54 -52.48 -0.29 1.75 16 37 H 0.21 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.16 2.23 7.19 -52.49 -0.38 1.86 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.24 3.75 -51.93 -0.19 1.05 16 44 H 0.05 0.93 6.46 -51.93 -0.34 0.60 16 45 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -33.03 364.08 -10.44 -43.47 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.60 Total: 2.45 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -3.99 Total: 5.11 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -1.39 Total: -63.06 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.03 -10.44 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199432007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.473 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds