Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00461 * 2 1 4 4 H 1.48492 * 109.47320 * 240.00384 * 3 2 1 5 5 H 1.48500 * 109.46692 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46926 * 120.00185 * 3 2 1 7 7 C 1.38818 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00133 * 210.11676 * 7 2 1 9 9 N 1.36942 * 119.99531 * 30.11127 * 7 2 1 10 10 C 1.46962 * 120.59169 * 221.60588 * 9 7 2 11 11 C 1.53374 * 108.63865 * 235.25301 * 10 9 7 12 12 N 1.46962 * 108.63297 * 310.58101 * 11 10 9 13 13 C 1.34775 * 120.59249 * 235.19920 * 12 11 10 14 14 O 1.21588 * 120.00214 * 5.48389 * 13 12 11 15 15 N 1.34777 * 119.99918 * 185.47622 * 13 12 11 16 16 C 1.39968 * 119.99980 * 184.62136 * 15 13 12 17 17 C 1.38960 * 120.00717 * 325.66775 * 16 15 13 18 18 C 1.38183 * 120.16502 * 179.97438 * 17 16 15 19 19 C 1.38082 * 120.19774 * 359.78647 * 18 17 16 20 20 C 1.39343 * 120.01547 * 0.46456 * 19 18 17 21 21 C 1.48425 * 120.08648 * 179.78571 * 20 19 18 22 22 C 1.40843 * 126.03731 * 359.73170 * 21 20 19 23 23 C 1.35078 * 107.85549 * 179.73540 * 22 21 20 24 24 N 1.35051 * 107.97573 * 359.97438 * 23 22 21 25 25 H 0.96994 * 125.92807 * 179.97438 * 24 23 22 26 26 N 1.31619 * 126.04092 * 179.41712 * 21 20 19 27 27 C 1.38643 * 120.01152 * 145.64464 * 16 15 13 28 28 C 1.46964 * 118.81516 * 55.47723 * 12 11 10 29 29 C 1.46968 * 120.59397 * 41.63992 * 9 7 2 30 30 H 0.97003 * 119.99516 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.60360 * 115.50808 * 10 9 7 32 32 H 1.09000 * 109.75598 * 355.08659 * 10 9 7 33 33 H 1.08991 * 109.61138 * 190.83401 * 11 10 9 34 34 H 1.08993 * 109.74620 * 70.40556 * 11 10 9 35 35 H 0.97004 * 120.00428 * 4.62444 * 15 13 12 36 36 H 1.07993 * 119.91599 * 359.97438 * 17 16 15 37 37 H 1.07997 * 119.89603 * 180.02562 * 18 17 16 38 38 H 1.07992 * 119.99396 * 180.25535 * 19 18 17 39 39 H 1.08004 * 126.07179 * 359.69337 * 22 21 20 40 40 H 1.07995 * 126.02169 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.09303 * 359.97438 * 27 16 15 42 42 H 1.09003 * 109.61391 * 64.26318 * 28 12 11 43 43 H 1.08999 * 109.61190 * 184.77864 * 28 12 11 44 44 H 1.08998 * 109.60284 * 244.49186 * 29 9 7 45 45 H 1.08997 * 109.61265 * 4.82685 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9808 -1.2656 0.4687 9 7 1.4640 -2.3078 -0.5960 10 6 1.5647 -3.6277 0.0423 11 6 2.2091 -4.6041 -0.9495 12 7 1.5125 -4.4920 -2.2387 13 6 0.9758 -5.5802 -2.8252 14 8 0.9775 -6.6477 -2.2431 15 7 0.4371 -5.4852 -4.0570 16 6 -0.2060 -6.5902 -4.6267 17 6 0.2575 -7.8742 -4.3670 18 6 -0.3752 -8.9674 -4.9273 19 6 -1.4741 -8.7904 -5.7445 20 6 -1.9424 -7.5061 -6.0144 21 6 -3.1206 -7.3138 -6.8965 22 6 -3.8564 -8.3338 -7.5303 23 6 -4.8497 -7.7506 -8.2359 24 7 -4.7558 -6.4147 -8.0619 25 1 -5.3409 -5.7473 -8.4530 26 7 -3.6658 -6.1603 -7.2199 27 6 -1.3061 -6.4040 -5.4498 28 6 1.4168 -3.1730 -2.8798 29 6 0.7674 -2.1957 -1.8852 30 1 -0.4849 0.8401 0.0004 31 1 0.5689 -3.9817 0.3094 32 1 2.1805 -3.5574 0.9389 33 1 2.1182 -5.6224 -0.5719 34 1 3.2622 -4.3549 -1.0799 35 1 0.4951 -4.6511 -4.5488 36 1 1.1145 -8.0180 -3.7258 37 1 -0.0115 -9.9634 -4.7223 38 1 -1.9686 -9.6474 -6.1774 39 1 -3.6607 -9.3939 -7.4645 40 1 -5.5895 -8.2625 -8.8334 41 1 -1.6684 -5.4069 -5.6521 42 1 2.4142 -2.8214 -3.1439 43 1 0.8024 -3.2461 -3.7772 44 1 -0.2851 -2.4477 -1.7553 45 1 0.8557 -1.1766 -2.2614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203156450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = 116.953079 kcal Electronic energy + Delta-G solvation = -28607.550422 eV Core-core repulsion = 24628.002294 eV Total energy + Delta-G solvation = -3979.548127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38525 -40.53952 -38.74252 -36.88872 -34.77438 -33.88304 -32.72502 -31.41476 -30.53355 -30.30055 -29.88467 -29.08834 -26.78245 -23.97399 -23.70582 -23.11106 -22.48478 -21.28811 -21.16116 -19.93496 -19.02648 -18.57326 -18.15725 -16.91376 -16.28091 -16.24550 -15.43165 -15.14012 -14.92099 -14.70262 -14.62716 -14.24269 -13.91765 -13.82745 -13.66763 -13.59685 -13.40235 -13.34006 -13.03691 -12.85293 -12.45696 -11.94685 -11.59219 -11.51207 -11.43529 -10.91297 -10.90439 -10.78129 -10.58711 -10.50816 -10.36763 -10.21439 -10.03154 -9.87627 -9.56475 -9.11566 -8.57382 -8.51358 -8.31703 -7.91024 -6.63820 -5.90847 -3.43745 0.91721 1.36377 1.76146 2.57131 2.70538 2.82334 3.31696 3.39080 3.39413 3.41450 3.95448 4.03999 4.26547 4.42154 4.50972 4.88735 5.04136 5.12023 5.15516 5.24250 5.37769 5.38443 5.45998 5.50364 5.67461 5.73871 5.77716 5.82488 5.93284 6.00729 6.12604 6.25004 6.25836 6.33451 6.38127 6.43995 6.50944 6.60234 6.74325 6.90103 6.97152 6.98254 7.09726 7.12557 7.25228 7.38265 7.78865 8.10534 8.41727 8.75543 9.05599 9.68004 10.36979 11.09210 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.002392 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.815325 B =11705.128364 C =13190.530482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.026 3.974 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.282 4.282 8 H 0.061 0.939 9 N -0.583 5.583 10 C 0.130 3.870 11 C 0.113 3.887 12 N -0.609 5.609 13 C 0.705 3.295 14 O -0.586 6.586 15 N -0.690 5.690 16 C 0.172 3.828 17 C -0.111 4.111 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.005 4.005 21 C 0.122 3.878 22 C -0.259 4.259 23 C 0.056 3.944 24 N -0.477 5.477 25 H 0.440 0.560 26 N -0.283 5.283 27 C -0.122 4.122 28 C 0.086 3.914 29 C 0.159 3.841 30 H 0.256 0.744 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.407 0.593 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.178 0.822 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.027 0.973 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -16.177 -17.772 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.177 4.177 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.411 4.411 8 H 0.078 0.922 9 N -0.306 5.306 10 C 0.004 3.996 11 C -0.011 4.011 12 N -0.344 5.344 13 C 0.407 3.593 14 O -0.464 6.464 15 N -0.339 5.339 16 C 0.077 3.923 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.007 4.007 21 C -0.043 4.043 22 C -0.288 4.288 23 C -0.091 4.091 24 N -0.185 5.185 25 H 0.284 0.716 26 N -0.107 5.107 27 C -0.144 4.144 28 C -0.039 4.039 29 C 0.032 3.968 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.245 0.755 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.148 0.852 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.115 -15.451 -17.121 23.859 hybrid contribution -0.240 0.993 -0.675 1.225 sum -6.356 -14.457 -17.796 23.793 Atomic orbital electron populations 1.70241 1.05929 1.26315 1.48598 1.25291 0.94659 0.99314 0.98440 0.86610 0.79639 0.83444 0.78571 1.20655 1.21679 1.20452 1.18864 0.98588 0.87396 1.36274 0.92181 1.43806 1.65918 1.03034 1.17857 1.21373 0.97841 0.86522 0.93892 1.22172 0.95165 1.01233 0.82553 1.47238 1.57905 1.06301 1.22979 1.15815 0.78478 0.84508 0.80468 1.90848 1.63764 1.27229 1.64575 1.42841 1.59508 1.14546 1.17027 1.17428 0.92230 0.87207 0.95459 1.21511 1.01258 0.90757 0.99681 1.20944 0.95647 0.98762 0.96890 1.21004 0.97414 0.95634 0.99581 1.17444 0.92957 0.93242 0.97084 1.20743 0.95582 0.90742 0.97228 1.21516 1.00057 1.00548 1.06701 1.22536 1.00628 0.84757 1.01162 1.46348 1.25779 1.06550 1.39827 0.71627 1.77579 1.00306 1.21887 1.10914 1.20918 0.94161 0.99377 0.99983 1.22615 1.01426 0.83726 0.96115 1.21139 0.93971 0.96458 0.85213 0.93396 0.95858 0.91313 0.89766 0.91970 0.75487 0.83737 0.85409 0.85694 0.83175 0.80533 0.85162 0.91293 0.92017 0.95480 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.89 13.10 55.49 0.73 -24.16 16 2 C 0.03 0.71 4.54 -17.43 -0.08 0.63 16 3 Si 0.89 20.72 29.65 -169.99 -5.04 15.68 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.28 -7.49 9.29 -15.05 -0.14 -7.63 16 8 H 0.06 1.59 7.99 -52.49 -0.42 1.17 16 9 N -0.58 -14.12 2.87 -171.76 -0.49 -14.61 16 10 C 0.13 2.78 6.67 -3.60 -0.02 2.75 16 11 C 0.11 2.07 6.60 -3.60 -0.02 2.04 16 12 N -0.61 -10.91 2.94 -177.95 -0.52 -11.44 16 13 C 0.70 12.56 8.14 -86.92 -0.71 11.86 16 14 O -0.59 -11.75 13.13 5.29 0.07 -11.68 16 15 N -0.69 -10.23 5.21 -14.25 -0.07 -10.31 16 16 C 0.17 2.49 6.31 -83.72 -0.53 1.96 16 17 C -0.11 -1.55 8.70 -39.33 -0.34 -1.90 16 18 C -0.10 -1.17 10.03 -39.66 -0.40 -1.57 16 19 C -0.12 -1.24 9.57 -39.23 -0.38 -1.61 16 20 C 0.00 -0.06 5.87 -104.92 -0.62 -0.67 16 21 C 0.12 1.45 6.99 -82.78 -0.58 0.87 16 22 C -0.26 -2.30 10.17 -39.72 -0.40 -2.70 16 23 C 0.06 0.38 11.97 -17.26 -0.21 0.17 16 24 N -0.48 -3.91 7.35 30.42 0.22 -3.68 16 25 H 0.44 2.14 8.96 -182.63 -1.64 0.50 16 26 N -0.28 -3.48 12.36 33.43 0.41 -3.07 16 27 C -0.12 -1.64 9.60 -39.06 -0.38 -2.02 16 28 C 0.09 1.47 6.55 -3.37 -0.02 1.44 16 29 C 0.16 3.50 5.83 -3.36 -0.02 3.48 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.41 7.94 -51.93 -0.41 1.00 16 33 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 5.13 6.38 -40.82 -0.26 4.87 16 36 H 0.15 2.23 6.15 -52.49 -0.32 1.91 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 0.99 7.03 -52.49 -0.37 0.62 16 39 H 0.15 0.99 7.33 -52.48 -0.38 0.60 16 40 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 1.72 7.85 -52.49 -0.41 1.31 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.86 5.69 -51.93 -0.30 0.56 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.69 7.31 -51.93 -0.38 1.31 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -34.11 371.38 -10.87 -44.98 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.93 Total: 5.59 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -4.84 Total: 7.11 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.27 Total: -67.28 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.04 Total: 15.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.11 -10.87 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203156450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.934 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds