Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48503 * 109.47395 * 269.99917 * 3 2 1 5 5 H 1.48497 * 109.47463 * 30.00430 * 3 2 1 6 6 H 1.48503 * 109.46875 * 150.00310 * 3 2 1 7 7 C 1.38800 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00343 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99586 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99581 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46503 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00608 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99526 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63188 * 359.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.51696 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 18 18 H 1.09005 * 109.52615 * 58.67140 * 17 16 15 19 19 N 1.46907 * 109.49942 * 178.74671 * 17 16 15 20 20 C 1.46901 * 111.00138 * 204.83955 * 19 17 16 21 21 C 1.50697 * 109.46977 * 180.02562 * 20 19 17 22 22 O 1.21290 * 120.00204 * 359.97438 * 21 20 19 23 23 N 1.34777 * 120.00005 * 180.02562 * 21 20 19 24 24 C 1.46500 * 120.00097 * 179.97438 * 23 21 20 25 25 C 1.53000 * 117.49973 * 223.74415 * 24 23 21 26 26 C 1.53000 * 117.50152 * 155.08453 * 24 23 21 27 27 C 1.46928 * 120.62829 * 179.97438 * 13 11 10 28 28 H 0.96998 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47103 * 60.00610 * 10 9 7 30 30 H 1.08994 * 109.47389 * 300.00036 * 10 9 7 31 31 H 1.09002 * 109.58751 * 353.37646 * 14 13 11 32 32 H 1.08996 * 109.58750 * 113.65831 * 14 13 11 33 33 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 34 34 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 35 35 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 36 36 H 1.09002 * 109.45432 * 181.24117 * 16 15 14 37 37 H 1.00901 * 111.00013 * 328.79911 * 19 17 16 38 38 H 1.09001 * 109.46734 * 300.00177 * 20 19 17 39 39 H 1.08998 * 109.47311 * 60.00035 * 20 19 17 40 40 H 0.96997 * 120.00078 * 359.97438 * 23 21 20 41 41 H 1.09002 * 115.55051 * 9.41153 * 24 23 21 42 42 H 1.09004 * 117.49544 * 359.97438 * 25 24 23 43 43 H 1.08991 * 117.50074 * 145.01893 * 25 24 23 44 44 H 1.08998 * 117.50002 * 214.97831 * 26 24 23 45 45 H 1.09004 * 117.49711 * 359.97341 * 26 24 23 46 46 H 1.08998 * 109.58787 * 246.20220 * 27 13 11 47 47 H 1.08999 * 109.58470 * 6.62573 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0864 -2.9847 -0.0025 11 6 5.5729 -3.2326 -0.0026 12 8 6.3439 -2.2965 -0.0014 13 7 6.0455 -4.4949 -0.0041 14 6 5.1240 -5.6392 -0.0050 15 6 5.4845 -6.5673 1.1593 16 6 6.9640 -6.9478 1.0634 17 6 7.8271 -5.6878 1.1609 18 1 7.6252 -5.1800 2.1041 19 7 9.2469 -6.0599 1.0987 20 6 10.0858 -5.0468 1.7528 21 6 11.5321 -5.4617 1.6686 22 8 11.8342 -6.4994 1.1182 23 7 12.4897 -4.6801 2.2056 24 6 13.8957 -5.0837 2.1242 25 6 14.7508 -4.9230 3.3827 26 6 14.9528 -3.9798 2.1942 27 6 7.4920 -4.7527 -0.0048 28 1 -0.4850 0.8400 0.0004 29 1 3.6432 -3.4311 -0.8927 30 1 3.6438 -3.4323 0.8872 31 1 4.1004 -5.2842 0.1141 32 1 5.2155 -6.1813 -0.9462 33 1 5.3034 -6.0537 2.1035 34 1 4.8712 -7.4671 1.1106 35 1 7.1489 -7.4416 0.1094 36 1 7.2180 -7.6259 1.8782 37 1 9.3998 -6.9717 1.5027 38 1 9.9536 -4.0875 1.2524 39 1 9.7944 -4.9540 2.7990 40 1 12.2481 -3.8503 2.6461 41 1 14.1028 -5.9388 1.4809 42 1 14.2674 -4.5165 4.2711 43 1 15.5207 -5.6721 3.5671 44 1 15.8555 -4.1089 1.5971 45 1 14.6022 -2.9532 2.3003 46 1 7.7788 -5.2237 -0.9449 47 1 8.0307 -3.8126 0.1145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207408979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = -42.066581 kcal Electronic energy + Delta-G solvation = -26747.554998 eV Core-core repulsion = 22864.262461 eV Total energy + Delta-G solvation = -3883.292537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36293 -39.92705 -37.93583 -37.35394 -35.31939 -33.29522 -32.48172 -32.42323 -30.83760 -29.06945 -26.47162 -25.67441 -25.21573 -22.91620 -22.87909 -22.01087 -21.10827 -20.88152 -19.13320 -17.82389 -17.55111 -17.03695 -16.83500 -16.36507 -15.60680 -15.48058 -15.27053 -15.11613 -14.95461 -14.79197 -14.47560 -13.96680 -13.92635 -13.67710 -13.30671 -13.21668 -12.98307 -12.94000 -12.77697 -12.53971 -12.11204 -12.06094 -11.85233 -11.69018 -11.30224 -11.23523 -11.14803 -11.02441 -11.02205 -10.74932 -10.57370 -10.19311 -9.87276 -9.49110 -9.22409 -9.01735 -8.93276 -8.54354 -8.50217 -6.93419 -6.30209 -4.02000 2.20508 2.50519 2.70262 2.91443 3.16384 3.32122 3.41688 3.48885 3.56109 3.85033 4.25517 4.30291 4.31669 4.40206 4.43912 4.48910 4.60634 4.66469 4.73450 4.81847 4.95827 5.01353 5.07825 5.08807 5.10707 5.11988 5.28615 5.28947 5.39894 5.43609 5.55614 5.63335 5.64224 5.69321 5.69809 5.77388 5.89069 5.97484 5.99183 6.04474 6.37251 6.66917 6.93487 7.07834 7.46209 7.83082 7.92810 8.40109 8.42482 9.16003 10.78971 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.002105 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.104271 B =13296.246574 C =14893.612904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.121 4.121 11 C 0.534 3.466 12 O -0.521 6.521 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.132 4.132 16 C -0.120 4.120 17 C 0.075 3.925 18 H 0.052 0.948 19 N -0.666 5.666 20 C 0.039 3.961 21 C 0.519 3.481 22 O -0.524 6.524 23 N -0.707 5.707 24 C 0.080 3.920 25 C -0.195 4.195 26 C -0.190 4.190 27 C 0.125 3.875 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.353 0.647 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.403 0.597 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.742 -14.960 6.692 28.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.395 6.395 13 N -0.354 5.354 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.035 4.035 18 H 0.070 0.930 19 N -0.299 5.299 20 C -0.093 4.093 21 C 0.305 3.695 22 O -0.398 6.398 23 N -0.358 5.358 24 C -0.026 4.026 25 C -0.233 4.233 26 C -0.228 4.228 27 C 0.001 3.999 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.174 0.826 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.237 0.763 41 H 0.156 0.844 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 24.989 -13.976 5.645 29.183 hybrid contribution -1.082 -0.043 1.220 1.631 sum 23.908 -14.019 6.865 28.553 Atomic orbital electron populations 1.69938 1.05898 1.27759 1.48054 1.24712 0.94454 0.98958 0.93191 0.86732 0.81863 0.83286 0.79949 1.19197 1.19965 1.15960 1.22307 0.88223 0.97521 1.58785 0.89392 1.84788 1.09329 1.00188 1.97410 1.23310 0.94104 1.04165 1.05591 1.20301 0.90638 0.81800 0.75044 1.90678 1.58752 1.41724 1.48372 1.48049 1.06447 1.05734 1.75159 1.21773 0.94262 0.87253 0.98588 1.21910 0.95944 0.99928 0.99347 1.21695 0.94632 0.96390 1.03064 1.21892 0.86650 0.96572 0.98392 0.93031 1.60009 1.04543 1.05003 1.60392 1.21893 0.89931 0.98348 0.99165 1.20623 0.87517 0.83820 0.77496 1.90712 1.83041 1.24011 1.42043 1.45392 1.05406 1.25526 1.59469 1.21592 0.78990 1.00667 1.01318 1.23446 1.03366 1.03280 0.93229 1.23400 1.00951 0.96317 1.02112 1.21436 0.80649 0.99852 0.97952 0.91946 0.88499 0.88524 0.89009 0.91133 0.91265 0.90102 0.90532 0.91688 0.82638 0.87466 0.91931 0.76271 0.84447 0.88479 0.87969 0.87794 0.88311 0.90778 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.33 4.50 36.01 0.16 -2.17 16 11 C 0.53 9.57 7.72 -10.98 -0.08 9.49 16 12 O -0.52 -11.14 15.27 5.56 0.08 -11.05 16 13 N -0.62 -8.28 2.97 -172.79 -0.51 -8.79 16 14 C 0.10 1.06 6.34 -3.71 -0.02 1.04 16 15 C -0.13 -1.07 6.09 -26.59 -0.16 -1.24 16 16 C -0.12 -0.94 5.16 -26.67 -0.14 -1.07 16 17 C 0.08 0.70 2.65 -67.61 -0.18 0.53 16 18 H 0.05 0.52 7.80 -51.93 -0.41 0.11 16 19 N -0.67 -6.07 5.93 -107.88 -0.64 -6.71 16 20 C 0.04 0.31 5.97 -4.98 -0.03 0.28 16 21 C 0.52 4.83 7.87 -10.99 -0.09 4.75 16 22 O -0.52 -6.82 15.77 5.55 0.09 -6.73 16 23 N -0.71 -4.85 5.57 -53.80 -0.30 -5.15 16 24 C 0.08 0.55 6.43 -67.93 -0.44 0.11 16 25 C -0.19 -0.98 10.46 -26.69 -0.28 -1.26 16 26 C -0.19 -0.94 10.46 -26.69 -0.28 -1.22 16 27 C 0.12 1.49 5.90 -3.73 -0.02 1.47 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.10 1.75 7.94 -51.92 -0.41 1.33 16 30 H 0.10 1.72 7.69 -51.92 -0.40 1.32 16 31 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.35 3.08 8.04 -39.29 -0.32 2.77 16 38 H 0.11 0.86 7.56 -51.93 -0.39 0.46 16 39 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 40 H 0.40 1.80 8.83 -40.82 -0.36 1.44 16 41 H 0.14 1.13 7.40 -51.93 -0.38 0.75 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.23 6.48 -51.93 -0.34 0.89 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -35.52 395.24 -10.14 -45.65 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.53 Total: 2.24 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.34 Total: -1.17 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.68 Total: -46.22 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.52 -10.14 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207408979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.587 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds