Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47610 * 270.00027 * 3 2 1 5 5 H 1.48501 * 109.47277 * 30.00637 * 3 2 1 6 6 H 1.48503 * 109.46693 * 150.00036 * 3 2 1 7 7 C 1.38797 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00306 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99936 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46877 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00313 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.63033 * 359.72119 * 13 11 10 15 15 C 1.53187 * 108.77642 * 126.66473 * 14 13 11 16 16 C 1.53041 * 109.31211 * 54.63373 * 15 14 13 17 17 C 1.53038 * 109.53768 * 298.63806 * 16 15 14 18 18 H 1.08999 * 109.49677 * 301.40907 * 17 16 15 19 19 N 1.46906 * 109.52465 * 181.33192 * 17 16 15 20 20 C 1.46896 * 111.00211 * 155.13998 * 19 17 16 21 21 C 1.50697 * 109.47368 * 179.97438 * 20 19 17 22 22 O 1.21287 * 119.99603 * 0.02562 * 21 20 19 23 23 N 1.34771 * 120.00578 * 180.02562 * 21 20 19 24 24 C 1.46492 * 120.00484 * 180.02562 * 23 21 20 25 25 C 1.53001 * 117.49827 * 223.62152 * 24 23 21 26 26 C 1.52999 * 60.00074 * 252.50840 * 25 24 23 27 27 C 1.46926 * 120.62918 * 180.02562 * 13 11 10 28 28 H 0.97005 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47008 * 60.00129 * 10 9 7 30 30 H 1.09001 * 109.47371 * 300.00132 * 10 9 7 31 31 H 1.09003 * 109.58516 * 246.45674 * 14 13 11 32 32 H 1.09002 * 109.58479 * 6.87832 * 14 13 11 33 33 H 1.08999 * 109.49975 * 294.68379 * 15 14 13 34 34 H 1.09004 * 109.52338 * 174.59879 * 15 14 13 35 35 H 1.09003 * 109.46022 * 178.61192 * 16 15 14 36 36 H 1.09007 * 109.44471 * 58.64946 * 16 15 14 37 37 H 1.00901 * 110.99816 * 31.18975 * 19 17 16 38 38 H 1.08998 * 109.47385 * 300.00757 * 20 19 17 39 39 H 1.09006 * 109.46740 * 60.00159 * 20 19 17 40 40 H 0.97011 * 119.99618 * 359.97438 * 23 21 20 41 41 H 1.09002 * 115.55243 * 9.32792 * 24 23 21 42 42 H 1.08998 * 117.50215 * 359.97438 * 25 24 23 43 43 H 1.09004 * 117.50188 * 145.01802 * 25 24 23 44 44 H 1.09004 * 117.49783 * 252.50742 * 26 25 24 45 45 H 1.08998 * 117.49778 * 107.48843 * 26 25 24 46 46 H 1.09002 * 109.58798 * 353.11768 * 27 13 11 47 47 H 1.08996 * 109.58371 * 113.54749 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9872 -5.3027 -0.0017 12 8 0.7910 -5.5022 0.0000 13 7 2.8440 -6.3432 -0.0022 14 6 4.2958 -6.1174 -0.0093 15 6 4.9212 -6.8937 1.1538 16 6 4.5135 -8.3657 1.0571 17 6 2.9912 -8.4830 1.1612 18 1 2.6570 -8.0543 2.1059 19 7 2.6026 -9.8984 1.1004 20 6 1.3087 -10.1179 1.7604 21 6 0.9437 -11.5777 1.6776 22 8 1.6885 -12.3584 1.1236 23 7 -0.2101 -12.0157 2.2190 24 6 -0.5646 -13.4348 2.1389 25 6 -2.0095 -13.7826 1.7754 26 6 -1.5102 -13.9881 3.2069 27 6 2.3439 -7.7247 -0.0024 28 1 -0.4850 0.8401 0.0004 29 1 3.1250 -3.7317 0.8875 30 1 3.1237 -3.7309 -0.8925 31 1 4.7157 -6.4695 -0.9515 32 1 4.5007 -5.0534 0.1094 33 1 4.5689 -6.4800 2.0986 34 1 6.0071 -6.8129 1.1036 35 1 4.9773 -8.9250 1.8696 36 1 4.8446 -8.7719 0.1013 37 1 3.3174 -10.4872 1.5010 38 1 1.3791 -9.8194 2.8064 39 1 0.5420 -9.5233 1.2637 40 1 -0.8055 -11.3913 2.6624 41 1 0.2203 -14.0954 1.7706 42 1 -2.6965 -12.9555 1.5963 43 1 -2.1756 -14.6721 1.1676 44 1 -1.3476 -15.0129 3.5409 45 1 -1.8684 -13.2963 3.9691 46 1 1.2609 -7.7213 0.1210 47 1 2.6050 -8.2076 -0.9440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207408980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = -42.332506 kcal Electronic energy + Delta-G solvation = -26694.999876 eV Core-core repulsion = 22811.695808 eV Total energy + Delta-G solvation = -3883.304068 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30809 -39.85173 -37.86571 -37.30031 -35.25497 -33.25630 -32.45152 -32.37336 -30.75042 -28.95370 -26.42230 -25.57841 -25.09342 -22.86618 -22.83900 -21.96880 -21.04628 -20.82834 -19.04442 -17.79322 -17.52633 -17.01313 -16.71905 -16.30293 -15.51460 -15.39843 -15.27729 -14.99734 -14.81458 -14.76942 -14.41022 -13.98777 -13.87807 -13.68606 -13.23195 -13.15796 -12.94150 -12.82074 -12.63684 -12.40800 -12.06929 -11.94394 -11.79515 -11.63805 -11.19505 -11.12931 -11.06946 -11.02827 -10.99198 -10.78217 -10.65630 -10.15297 -9.81253 -9.36845 -9.18759 -9.07730 -8.87690 -8.45973 -8.23559 -6.51224 -6.22718 -3.93319 2.24404 2.55154 2.91629 3.04615 3.21418 3.24831 3.29191 3.45523 3.56160 3.90305 4.19221 4.29292 4.34605 4.45702 4.48330 4.52436 4.64991 4.77598 4.85381 4.96641 5.00851 5.06830 5.12420 5.13708 5.15231 5.32375 5.32630 5.40392 5.47170 5.55965 5.59677 5.67690 5.68305 5.74535 5.77860 5.88019 5.95970 6.03261 6.08314 6.11002 6.43774 6.74247 6.97859 7.11828 7.56417 7.58861 7.86883 8.34059 8.55729 9.22604 10.84663 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.001969 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.123841 B =14213.762616 C =15542.426015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.518 6.518 13 N -0.620 5.620 14 C 0.106 3.894 15 C -0.132 4.132 16 C -0.119 4.119 17 C 0.075 3.925 18 H 0.052 0.948 19 N -0.666 5.666 20 C 0.039 3.961 21 C 0.519 3.481 22 O -0.524 6.524 23 N -0.707 5.707 24 C 0.080 3.920 25 C -0.193 4.193 26 C -0.190 4.190 27 C 0.125 3.875 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.353 0.647 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.403 0.597 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -24.975 6.572 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.393 6.393 13 N -0.356 5.356 14 C -0.017 4.017 15 C -0.171 4.171 16 C -0.157 4.157 17 C -0.035 4.035 18 H 0.070 0.930 19 N -0.299 5.299 20 C -0.094 4.094 21 C 0.306 3.694 22 O -0.399 6.399 23 N -0.358 5.358 24 C -0.026 4.026 25 C -0.232 4.232 26 C -0.229 4.229 27 C 0.001 3.999 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.173 0.827 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.238 0.762 41 H 0.155 0.845 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.656 -25.658 5.534 26.502 hybrid contribution 1.830 1.637 1.214 2.739 sum 5.486 -24.022 6.748 25.548 Atomic orbital electron populations 1.70020 1.05948 1.27440 1.46864 1.24991 0.95029 0.99021 0.94544 0.86171 0.79400 0.81577 0.78367 1.20255 1.20762 1.19704 1.22857 0.94888 0.91630 1.58939 0.90940 1.85394 1.05052 0.96354 1.96699 1.23555 1.06445 0.95384 1.04707 1.20334 0.86189 0.86190 0.74922 1.90680 1.15212 1.85250 1.48121 1.48086 1.06428 1.05683 1.75435 1.21744 0.80036 1.01555 0.98403 1.21905 1.00875 0.94918 0.99433 1.21689 0.94114 0.96940 1.02996 1.21912 0.95573 0.87563 0.98467 0.93031 1.60010 1.03680 1.05957 1.60287 1.21895 0.95181 0.93150 0.99124 1.20625 0.80663 0.90642 0.77505 1.90709 1.50304 1.56959 1.41899 1.45393 1.22779 1.08466 1.59156 1.21584 0.93849 0.83664 1.03491 1.23439 0.97576 1.04018 0.98171 1.23388 1.03837 1.02884 0.92770 1.21434 1.00144 0.80477 0.97831 0.92192 0.89289 0.89228 0.91301 0.89096 0.91283 0.90265 0.91749 0.90559 0.82711 0.91927 0.87423 0.76243 0.84484 0.88314 0.87937 0.87873 0.88408 0.89259 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.03 4.50 36.01 0.16 -2.86 16 11 C 0.54 10.13 7.72 -10.98 -0.08 10.04 16 12 O -0.52 -11.73 15.28 5.56 0.08 -11.64 16 13 N -0.62 -8.76 2.97 -172.75 -0.51 -9.27 16 14 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 15 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 16 C -0.12 -0.98 5.17 -26.69 -0.14 -1.12 16 17 C 0.08 0.74 2.64 -67.57 -0.18 0.56 16 18 H 0.05 0.54 7.80 -51.93 -0.41 0.14 16 19 N -0.67 -6.35 5.93 -107.85 -0.64 -6.99 16 20 C 0.04 0.33 5.97 -4.98 -0.03 0.30 16 21 C 0.52 5.02 7.87 -10.99 -0.09 4.94 16 22 O -0.52 -7.00 15.77 5.55 0.09 -6.91 16 23 N -0.71 -5.09 5.57 -53.81 -0.30 -5.39 16 24 C 0.08 0.57 6.43 -67.93 -0.44 0.13 16 25 C -0.19 -1.10 10.46 -26.73 -0.28 -1.38 16 26 C -0.19 -0.96 10.46 -26.73 -0.28 -1.24 16 27 C 0.12 1.58 5.90 -3.69 -0.02 1.56 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.65 7.70 -51.92 -0.40 1.25 16 30 H 0.09 1.68 7.94 -51.92 -0.41 1.26 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.99 5.94 -51.93 -0.31 0.68 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.35 3.20 8.04 -39.29 -0.32 2.88 16 38 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.11 0.92 7.56 -51.93 -0.39 0.53 16 40 H 0.40 1.95 8.83 -40.82 -0.36 1.59 16 41 H 0.14 1.16 7.40 -51.93 -0.38 0.77 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.30 6.48 -51.93 -0.34 0.96 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -35.93 397.93 -10.65 -46.58 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.50 Total: 2.63 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.36 Total: -2.08 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.72 Total: -46.92 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.93 -10.65 -46.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207408980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds