Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48504 * 109.47277 * 269.99516 * 3 2 1 5 5 H 1.48496 * 109.47162 * 29.99728 * 3 2 1 6 6 H 1.48503 * 109.47138 * 149.99999 * 3 2 1 7 7 C 1.38800 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99838 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47148 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00116 * 179.97438 * 11 10 9 14 14 C 1.46930 * 120.62835 * 359.97438 * 13 11 10 15 15 C 1.53194 * 108.77516 * 233.63182 * 14 13 11 16 16 C 1.53043 * 109.33622 * 305.38176 * 15 14 13 17 17 C 1.53044 * 109.54057 * 61.31973 * 16 15 14 18 18 H 1.08997 * 109.49618 * 58.64896 * 17 16 15 19 19 N 1.46898 * 109.49611 * 178.71490 * 17 16 15 20 20 C 1.46897 * 110.99995 * 205.67777 * 19 17 16 21 21 H 1.08995 * 109.33305 * 326.74545 * 20 19 17 22 22 C 1.53075 * 109.39843 * 86.52255 * 20 19 17 23 23 C 1.53348 * 108.45717 * 169.01102 * 22 20 19 24 24 C 1.52925 * 108.66698 * 292.51294 * 23 22 20 25 25 N 1.45758 * 110.50487 * 50.72369 * 24 23 22 26 26 C 1.33353 * 124.10746 * 340.91474 * 25 24 23 27 27 O 1.21281 * 118.24068 * 182.27144 * 26 25 24 28 28 C 1.46926 * 120.63108 * 180.02562 * 13 11 10 29 29 H 0.97000 * 120.00159 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47239 * 59.99773 * 10 9 7 31 31 H 1.09000 * 109.46788 * 299.99664 * 10 9 7 32 32 H 1.08998 * 109.58592 * 353.41714 * 14 13 11 33 33 H 1.08994 * 109.58706 * 113.84235 * 14 13 11 34 34 H 1.08996 * 109.49846 * 65.31155 * 15 14 13 35 35 H 1.08994 * 109.49555 * 185.41731 * 15 14 13 36 36 H 1.08995 * 109.43271 * 301.31062 * 16 15 14 37 37 H 1.08999 * 109.48487 * 181.35266 * 16 15 14 38 38 H 1.00900 * 111.00280 * 329.64003 * 19 17 16 39 39 H 1.09001 * 109.67599 * 288.76725 * 22 20 19 40 40 H 1.09005 * 109.67065 * 49.26062 * 22 20 19 41 41 H 1.08998 * 109.60081 * 52.24362 * 23 22 20 42 42 H 1.08989 * 109.60269 * 172.73470 * 23 22 20 43 43 H 1.08995 * 109.28415 * 290.41148 * 24 23 22 44 44 H 1.08998 * 109.29683 * 171.04175 * 24 23 22 45 45 H 0.96998 * 117.94519 * 160.93056 * 25 24 23 46 46 H 1.08999 * 109.58653 * 6.58257 * 28 13 11 47 47 H 1.08999 * 109.58170 * 246.15465 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0035 13 7 6.0458 -4.4945 0.0026 14 6 5.1244 -5.6390 0.0027 15 6 5.4847 -6.5620 1.1710 16 6 6.9633 -6.9456 1.0765 17 6 7.8261 -5.6852 1.1720 18 1 7.6229 -5.1758 2.1140 19 7 9.2459 -6.0573 1.1121 20 6 10.0822 -5.0526 1.7822 21 1 9.6381 -4.0662 1.6484 22 6 10.1648 -5.3745 3.2764 23 6 11.2502 -4.4915 3.9040 24 6 12.6106 -4.9238 3.3553 25 7 12.5775 -4.9865 1.8995 26 6 11.4577 -5.0663 1.1797 27 8 11.5555 -5.1551 -0.0259 28 6 7.4923 -4.7522 0.0043 29 1 -0.4850 0.8400 -0.0004 30 1 3.6441 -3.4313 -0.8892 31 1 3.6434 -3.4316 0.8907 32 1 4.1006 -5.2837 0.1199 33 1 5.2188 -6.1842 -0.9364 34 1 5.3031 -6.0445 2.1129 35 1 4.8718 -7.4622 1.1257 36 1 7.1491 -7.4415 0.1238 37 1 7.2164 -7.6216 1.8931 38 1 9.3964 -6.9740 1.5059 39 1 9.2049 -5.1684 3.7498 40 1 10.4226 -6.4249 3.4117 41 1 11.0671 -3.4483 3.6465 42 1 11.2376 -4.6110 4.9872 43 1 12.8631 -5.9068 3.7526 44 1 13.3695 -4.2065 3.6678 45 1 13.4230 -4.9695 1.4244 46 1 8.0308 -3.8119 0.1227 47 1 7.7803 -5.2249 -0.9346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = -71.385209 kcal Electronic energy + Delta-G solvation = -27826.232622 eV Core-core repulsion = 23941.668734 eV Total energy + Delta-G solvation = -3884.563888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80400 -39.92673 -37.79446 -36.74915 -35.60491 -32.93159 -32.43353 -31.95516 -30.64624 -29.24967 -27.49196 -25.67583 -25.21891 -24.56704 -22.98609 -22.35315 -21.10205 -19.58125 -19.07998 -17.70619 -17.61032 -16.89079 -16.54525 -16.04969 -16.01231 -15.47904 -15.24600 -14.95908 -14.89245 -14.65973 -14.44272 -14.06359 -13.88209 -13.79399 -13.66846 -13.27236 -13.00830 -12.78954 -12.64214 -12.48573 -12.16964 -12.02880 -11.82580 -11.74028 -11.43680 -11.28149 -11.22723 -11.12877 -11.00279 -10.72167 -10.54659 -9.99377 -9.85101 -9.44485 -9.40031 -8.99837 -8.86962 -8.49241 -8.47172 -6.91147 -6.28497 -4.00001 2.37667 2.71595 2.88481 2.96148 3.19661 3.34159 3.51132 3.57797 3.78104 4.15323 4.16784 4.28948 4.33554 4.41249 4.44020 4.61254 4.68923 4.73650 4.81595 4.87240 4.92271 5.06361 5.10246 5.10676 5.12790 5.18981 5.28958 5.31983 5.40299 5.43051 5.59876 5.65032 5.65941 5.69409 5.74711 5.80766 5.95591 5.99805 6.03436 6.36378 6.49763 6.70732 6.89300 7.06524 7.50851 7.94557 8.02036 8.41790 8.47234 9.17876 10.80687 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.002509 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.127956 B =11156.912901 C =12096.281801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.132 4.132 16 C -0.120 4.120 17 C 0.078 3.922 18 H 0.053 0.947 19 N -0.660 5.660 20 C 0.077 3.923 21 H 0.113 0.887 22 C -0.153 4.153 23 C -0.135 4.135 24 C 0.111 3.889 25 N -0.726 5.726 26 C 0.523 3.477 27 O -0.526 6.526 28 C 0.125 3.875 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.347 0.653 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.399 0.601 46 H 0.089 0.911 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.210 -17.790 9.798 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.394 6.394 13 N -0.354 5.354 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.033 4.033 18 H 0.071 0.929 19 N -0.292 5.292 20 C -0.037 4.037 21 H 0.131 0.869 22 C -0.192 4.192 23 C -0.174 4.174 24 C -0.014 4.014 25 N -0.381 5.381 26 C 0.308 3.692 27 O -0.401 6.401 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.167 0.833 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.234 0.766 46 H 0.107 0.893 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.082 -16.080 8.623 29.423 hybrid contribution -0.656 -0.573 0.931 1.275 sum 22.426 -16.653 9.554 29.521 Atomic orbital electron populations 1.69935 1.05903 1.27750 1.48134 1.24710 0.94448 0.98957 0.93197 0.86737 0.81874 0.83282 0.79972 1.19189 1.19979 1.15940 1.22308 0.88249 0.97507 1.58707 0.89398 1.84807 1.09272 1.00236 1.97401 1.23306 0.94129 1.04126 1.05549 1.20303 0.90617 0.81845 0.75131 1.90688 1.58746 1.41714 1.48257 1.48059 1.06472 1.05694 1.75172 1.21775 0.94284 0.87297 0.98516 1.21900 0.95901 0.99932 0.99366 1.21701 0.94752 0.96387 1.02932 1.21885 0.86381 0.96578 0.98425 0.92912 1.59974 1.05134 1.04297 1.59813 1.21506 0.91923 0.99071 0.91182 0.86937 1.22443 1.00383 1.00647 0.95763 1.21842 0.93562 1.00713 1.01256 1.21357 0.98408 1.01563 0.80040 1.45544 1.09054 1.75938 1.07524 1.20014 0.86157 0.75849 0.87191 1.90766 1.87034 1.47679 1.14592 1.21437 0.80405 0.99978 0.97991 0.91955 0.88521 0.88556 0.89010 0.91148 0.91256 0.90173 0.90568 0.91761 0.83341 0.90384 0.90879 0.90501 0.89523 0.91787 0.90505 0.76597 0.89274 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 11 C 0.53 9.90 7.72 -10.98 -0.08 9.82 16 12 O -0.52 -11.58 15.28 5.55 0.08 -11.50 16 13 N -0.62 -8.66 2.97 -172.79 -0.51 -9.18 16 14 C 0.10 1.10 6.34 -3.71 -0.02 1.07 16 15 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 16 C -0.12 -0.91 5.16 -26.69 -0.14 -1.05 16 17 C 0.08 0.74 2.44 -67.61 -0.17 0.58 16 18 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 19 N -0.66 -6.06 5.81 -101.09 -0.59 -6.65 16 20 C 0.08 0.69 2.48 -69.08 -0.17 0.52 16 21 H 0.11 1.19 7.22 -51.93 -0.37 0.82 16 22 C -0.15 -0.87 5.31 -26.51 -0.14 -1.02 16 23 C -0.14 -0.61 6.02 -26.59 -0.16 -0.77 16 24 C 0.11 0.45 7.17 -4.48 -0.03 0.42 16 25 N -0.73 -5.19 5.45 -61.39 -0.33 -5.52 16 26 C 0.52 5.58 7.44 -11.88 -0.09 5.49 16 27 O -0.53 -8.08 17.49 5.56 0.10 -7.98 16 28 C 0.13 1.64 5.90 -3.73 -0.02 1.62 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.10 1.78 7.94 -51.92 -0.41 1.37 16 31 H 0.10 1.74 7.69 -51.92 -0.40 1.34 16 32 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 38 H 0.35 2.54 7.89 -39.29 -0.31 2.23 16 39 H 0.08 0.46 7.73 -51.93 -0.40 0.05 16 40 H 0.07 0.35 7.90 -51.93 -0.41 -0.06 16 41 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 42 H 0.09 0.25 8.14 -51.94 -0.42 -0.17 16 43 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.40 2.56 8.80 -40.82 -0.36 2.20 16 46 H 0.09 1.39 6.45 -51.93 -0.33 1.06 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -36.77 382.93 -9.72 -46.49 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.49 Total: 1.58 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.81 Total: 1.26 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.66 Total: -47.15 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.18 Total: -19.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.77 -9.72 -46.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.891 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds