Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99894 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99423 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63426 * 359.71971 * 13 11 10 15 15 C 1.53624 * 108.54437 * 126.37012 * 14 13 11 16 16 C 1.53037 * 109.24215 * 54.85577 * 15 14 13 17 17 C 1.53038 * 109.53886 * 298.51092 * 16 15 14 18 18 H 1.08999 * 109.49860 * 301.41642 * 17 16 15 19 19 N 1.46901 * 109.52730 * 181.33180 * 17 16 15 20 20 C 1.46893 * 111.00061 * 155.14429 * 19 17 16 21 21 H 1.08997 * 109.40052 * 35.00497 * 20 19 17 22 22 C 1.53067 * 109.40152 * 154.83107 * 20 19 17 23 23 C 1.53344 * 108.42869 * 169.02894 * 22 20 19 24 24 C 1.52917 * 108.67563 * 292.46929 * 23 22 20 25 25 N 1.45754 * 110.48598 * 50.75209 * 24 23 22 26 26 C 1.33232 * 124.07240 * 340.84305 * 25 24 23 27 27 O 1.21281 * 118.16058 * 182.28967 * 26 25 24 28 28 C 1.46931 * 120.62475 * 179.97438 * 13 11 10 29 29 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46895 * 300.00170 * 10 9 7 31 31 H 1.09003 * 109.47006 * 60.00004 * 10 9 7 32 32 H 1.08996 * 109.58790 * 246.20362 * 14 13 11 33 33 H 1.09001 * 109.58881 * 6.62940 * 14 13 11 34 34 H 1.08999 * 109.63477 * 294.86076 * 15 14 13 35 35 H 1.09004 * 109.45639 * 174.74381 * 15 14 13 36 36 H 1.09005 * 109.46027 * 178.49071 * 16 15 14 37 37 H 1.08994 * 109.44724 * 58.52904 * 16 15 14 38 38 H 1.00904 * 110.99468 * 31.19299 * 19 17 16 39 39 H 1.09005 * 109.67477 * 288.76683 * 22 20 19 40 40 H 1.09002 * 109.67561 * 49.26160 * 22 20 19 41 41 H 1.08996 * 109.60293 * 52.22780 * 23 22 20 42 42 H 1.09004 * 109.60376 * 172.71255 * 23 22 20 43 43 H 1.08995 * 109.30023 * 171.06243 * 24 23 22 44 44 H 1.08996 * 109.30428 * 290.44239 * 24 23 22 45 45 H 0.97001 * 117.94787 * 160.92581 * 25 24 23 46 46 H 1.08991 * 109.58868 * 353.37554 * 28 13 11 47 47 H 1.09008 * 109.58157 * 113.65996 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 4.2959 -6.1174 -0.0048 15 6 4.9150 -6.8923 1.1683 16 6 4.5078 -8.3643 1.0713 17 6 2.9850 -8.4816 1.1672 18 1 2.6456 -8.0516 2.1096 19 7 2.5967 -9.8970 1.1061 20 6 1.2993 -10.1157 1.7593 21 1 0.6578 -9.2511 1.5889 22 6 0.6374 -11.3638 1.1703 23 6 -0.5689 -11.7306 2.0432 24 6 -0.0620 -12.1904 3.4106 25 7 0.8736 -11.2178 3.9613 26 6 1.5083 -10.2987 3.2352 27 8 2.2968 -9.5690 3.7980 28 6 2.3440 -7.7247 0.0003 29 1 -0.4850 0.8401 0.0004 30 1 3.1244 -3.7314 -0.8895 31 1 3.1245 -3.7314 0.8906 32 1 4.7177 -6.4734 -0.9446 33 1 4.5006 -5.0529 0.1100 34 1 4.5575 -6.4773 2.1107 35 1 6.0011 -6.8115 1.1240 36 1 4.9672 -8.9227 1.8870 37 1 4.8441 -8.7717 0.1179 38 1 3.3093 -10.4853 1.5114 39 1 0.3049 -11.1574 0.1529 40 1 1.3501 -12.1885 1.1631 41 1 -1.2105 -10.8580 2.1655 42 1 -1.1302 -12.5370 1.5711 43 1 -0.9074 -12.3015 4.0895 44 1 0.4395 -13.1523 3.3042 45 1 1.0454 -11.2422 4.9157 46 1 1.2605 -7.7211 0.1183 47 1 2.6075 -8.2086 -0.9403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = -74.646583 kcal Electronic energy + Delta-G solvation = -27903.756324 eV Core-core repulsion = 24019.051012 eV Total energy + Delta-G solvation = -3884.705312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94368 -39.77218 -37.51932 -36.82844 -35.45672 -32.88095 -32.39925 -31.87772 -30.56164 -29.16515 -27.43646 -25.54596 -25.02301 -24.23226 -23.14070 -22.21627 -20.89353 -19.51804 -18.94633 -17.68660 -17.63795 -16.91987 -16.67566 -16.03104 -15.64647 -15.48691 -15.06437 -14.82827 -14.77689 -14.61497 -14.42146 -13.95323 -13.87145 -13.82318 -13.58908 -13.13867 -12.89835 -12.68336 -12.49414 -12.20402 -11.92717 -11.81470 -11.75596 -11.62517 -11.35932 -11.07581 -11.03938 -10.99696 -10.90565 -10.73564 -10.53480 -10.32766 -9.76967 -9.47626 -9.29683 -9.03822 -8.82076 -8.36757 -8.18592 -6.46458 -6.18747 -3.88855 2.26352 2.90368 2.96316 3.12171 3.24475 3.28013 3.32313 3.59345 3.83600 4.16051 4.23162 4.29017 4.39931 4.48655 4.59440 4.79685 4.87526 4.91091 4.97222 5.04660 5.07847 5.16314 5.18744 5.28665 5.31884 5.38904 5.45326 5.49705 5.62043 5.64988 5.73638 5.75954 5.78343 5.87891 5.93936 5.96134 6.04050 6.16547 6.18068 6.37168 6.52766 6.80942 6.89669 7.01511 7.62144 7.64999 7.85073 8.38203 8.63073 9.26500 10.88721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.002389 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.372233 B =11715.251234 C =12406.791210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.619 5.619 14 C 0.107 3.893 15 C -0.132 4.132 16 C -0.115 4.115 17 C 0.068 3.932 18 H 0.070 0.930 19 N -0.653 5.653 20 C 0.073 3.927 21 H 0.114 0.886 22 C -0.109 4.109 23 C -0.140 4.140 24 C 0.109 3.891 25 N -0.719 5.719 26 C 0.489 3.511 27 O -0.550 6.550 28 C 0.126 3.874 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.346 0.654 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.087 0.913 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -28.026 3.742 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.208 1.208 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.324 3.676 12 O -0.394 6.394 13 N -0.355 5.355 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.042 4.042 18 H 0.088 0.912 19 N -0.284 5.284 20 C -0.041 4.041 21 H 0.131 0.869 22 C -0.148 4.148 23 C -0.178 4.178 24 C -0.016 4.016 25 N -0.371 5.371 26 C 0.274 3.726 27 O -0.428 6.428 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.165 0.835 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.232 0.768 46 H 0.105 0.895 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.014 -27.759 3.129 28.221 hybrid contribution 2.273 1.203 1.461 2.957 sum 6.287 -26.556 4.590 27.673 Atomic orbital electron populations 1.70024 1.05948 1.27395 1.46970 1.24995 0.95026 0.99010 0.94589 0.86170 0.79417 0.81596 0.78334 1.20292 1.19686 1.20768 1.22861 0.94889 0.91643 1.58799 0.90951 1.85387 1.05128 0.96335 1.96687 1.23551 1.06396 0.95401 1.04694 1.20321 0.86197 0.86200 0.74921 1.90673 1.15221 1.85259 1.48197 1.48056 1.06438 1.05672 1.75335 1.21827 0.80033 1.01527 0.98243 1.21970 1.00669 0.95082 0.99407 1.21626 0.94455 0.96940 1.02307 1.21996 0.95469 0.87597 0.99123 0.91232 1.60690 1.03447 1.07118 1.57167 1.21721 0.94075 1.01146 0.87121 0.86858 1.21641 0.96476 0.96409 1.00229 1.21925 0.98445 1.02995 0.94484 1.21417 0.92576 0.91502 0.96075 1.45584 1.45289 1.34301 1.11973 1.21434 0.80212 0.79528 0.91428 1.90783 1.36032 1.44147 1.71823 1.21411 1.00106 0.80626 0.97634 0.92223 0.89250 0.89276 0.91355 0.89167 0.91167 0.90480 0.91821 0.91113 0.83532 0.89568 0.90913 0.90568 0.89262 0.90496 0.91595 0.76821 0.89452 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.44 9.50 30.94 0.29 -15.14 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.15 -3.16 4.50 36.01 0.16 -3.00 16 11 C 0.54 10.74 7.72 -10.98 -0.08 10.65 16 12 O -0.52 -12.29 15.27 5.56 0.08 -12.21 16 13 N -0.62 -9.47 2.97 -172.53 -0.51 -9.99 16 14 C 0.11 1.27 6.37 -3.49 -0.02 1.25 16 15 C -0.13 -1.37 6.10 -26.39 -0.16 -1.53 16 16 C -0.12 -1.15 5.17 -26.69 -0.14 -1.29 16 17 C 0.07 0.80 2.16 -67.61 -0.15 0.66 16 18 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 19 N -0.65 -6.25 5.96 -101.09 -0.60 -6.85 16 20 C 0.07 0.68 2.57 -69.08 -0.18 0.50 16 21 H 0.11 1.25 7.17 -51.93 -0.37 0.88 16 22 C -0.11 -0.67 5.63 -26.52 -0.15 -0.82 16 23 C -0.14 -0.65 6.02 -26.60 -0.16 -0.81 16 24 C 0.11 0.47 7.17 -4.49 -0.03 0.43 16 25 N -0.72 -5.32 5.44 -61.42 -0.33 -5.65 16 26 C 0.49 5.20 7.17 -11.92 -0.09 5.11 16 27 O -0.55 -8.12 15.82 5.56 0.09 -8.03 16 28 C 0.13 1.70 5.88 -3.73 -0.02 1.68 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.09 1.74 7.93 -51.92 -0.41 1.33 16 31 H 0.09 1.76 7.70 -51.91 -0.40 1.36 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.35 3.11 8.07 -39.29 -0.32 2.79 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 41 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.40 2.71 8.80 -40.82 -0.36 2.35 16 46 H 0.09 1.36 6.38 -51.93 -0.33 1.03 16 47 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -36.70 383.81 -10.26 -46.96 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.45 Total: 3.35 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.82 Total: -0.30 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.71 Total: -48.28 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.17 Total: -20.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.70 -10.26 -46.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.689 kcal (2) G-P(sol) polarization free energy of solvation -36.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds