Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48501 * 109.47486 * 240.00449 * 3 2 1 5 5 H 1.48509 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47267 * 119.99864 * 3 2 1 7 7 C 1.38797 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00010 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47025 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99876 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99826 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.63081 * 359.97438 * 13 11 10 15 15 C 1.53186 * 108.77472 * 233.62945 * 14 13 11 16 16 C 1.53045 * 109.31224 * 305.36192 * 15 14 13 17 17 C 1.53041 * 109.53603 * 61.36603 * 16 15 14 18 18 H 1.08999 * 109.52355 * 58.60404 * 17 16 15 19 19 N 1.46901 * 109.49551 * 178.68304 * 17 16 15 20 20 C 1.46905 * 110.99870 * 204.83856 * 19 17 16 21 21 H 1.08996 * 109.40091 * 325.17344 * 20 19 17 22 22 C 1.53065 * 109.40198 * 205.43123 * 20 19 17 23 23 C 1.53323 * 108.44064 * 190.98052 * 22 20 19 24 24 C 1.52923 * 108.68688 * 67.50453 * 23 22 20 25 25 N 1.45757 * 110.48691 * 309.26069 * 24 23 22 26 26 C 1.33350 * 124.10734 * 19.09671 * 25 24 23 27 27 O 1.21284 * 118.24858 * 177.75640 * 26 25 24 28 28 C 1.46923 * 120.63174 * 180.02562 * 13 11 10 29 29 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46642 * 60.00087 * 10 9 7 31 31 H 1.08998 * 109.47108 * 300.00063 * 10 9 7 32 32 H 1.09002 * 109.58149 * 353.41307 * 14 13 11 33 33 H 1.08993 * 109.58908 * 113.69717 * 14 13 11 34 34 H 1.08998 * 109.50395 * 65.31157 * 15 14 13 35 35 H 1.08998 * 109.49827 * 185.37992 * 15 14 13 36 36 H 1.08997 * 109.45839 * 301.34727 * 16 15 14 37 37 H 1.08999 * 109.46322 * 181.38678 * 16 15 14 38 38 H 1.00901 * 111.00067 * 328.79031 * 19 17 16 39 39 H 1.09004 * 109.67433 * 310.70314 * 22 20 19 40 40 H 1.08997 * 109.67524 * 71.23450 * 22 20 19 41 41 H 1.08997 * 109.58804 * 307.75588 * 23 22 20 42 42 H 1.08996 * 109.74623 * 187.35062 * 23 22 20 43 43 H 1.08998 * 109.30613 * 188.94793 * 24 23 22 44 44 H 1.09009 * 109.29982 * 69.56794 * 24 23 22 45 45 H 0.96999 * 117.94512 * 199.07188 * 25 24 23 46 46 H 1.09006 * 109.58377 * 6.58938 * 28 13 11 47 47 H 1.08997 * 109.70806 * 246.22889 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 4.2959 -6.1173 -0.0019 15 6 4.9141 -6.8920 -1.1701 16 6 4.5070 -8.3641 -1.0729 17 6 2.9841 -8.4813 -1.1676 18 1 2.6435 -8.0516 -2.1097 19 7 2.5966 -9.8970 -1.1060 20 6 1.2984 -10.1163 -1.7578 21 1 0.6579 -9.2506 -1.5894 22 6 0.6348 -11.3610 -1.1635 23 6 -0.5721 -11.7297 -2.0342 24 6 -0.0667 -12.1955 -3.4002 25 7 0.8698 -11.2263 -3.9553 26 6 1.5064 -10.3034 -3.2333 27 8 2.2952 -9.5759 -3.7986 28 6 2.3441 -7.7247 -0.0003 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7313 0.8895 31 1 3.1245 -3.7314 -0.8905 32 1 4.5000 -5.0532 -0.1205 33 1 4.7214 -6.4685 0.9380 34 1 4.5558 -6.4769 -2.1121 35 1 6.0001 -6.8107 -1.1264 36 1 4.8441 -8.7719 -0.1200 37 1 4.9657 -8.9223 -1.8891 38 1 3.3090 -10.4849 -1.5121 39 1 1.3461 -12.1869 -1.1539 40 1 0.3031 -11.1499 -0.1468 41 1 -1.2126 -10.8567 -2.1595 42 1 -1.1367 -12.5324 -1.5600 43 1 -0.9127 -12.3081 -4.0782 44 1 0.4336 -13.1578 -3.2904 45 1 1.0410 -11.2546 -4.9097 46 1 1.2604 -7.7210 -0.1177 47 1 2.6082 -8.2111 0.9387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -74.735985 kcal Electronic energy + Delta-G solvation = -27902.870057 eV Core-core repulsion = 24018.160868 eV Total energy + Delta-G solvation = -3884.709189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93610 -39.77739 -37.52296 -36.83000 -35.46098 -32.87922 -32.39838 -31.88969 -30.56863 -29.16749 -27.43912 -25.54591 -25.02905 -24.22979 -23.13987 -22.21416 -20.89591 -19.51625 -18.94498 -17.68550 -17.63694 -16.91934 -16.67675 -16.03060 -15.64573 -15.49147 -15.06328 -14.82871 -14.77535 -14.61712 -14.42227 -13.95268 -13.87506 -13.82600 -13.59301 -13.13813 -12.90387 -12.68847 -12.49511 -12.20514 -11.92530 -11.81533 -11.75694 -11.62622 -11.35759 -11.07233 -11.01627 -11.01184 -10.90637 -10.74128 -10.53636 -10.32747 -9.77753 -9.47466 -9.29790 -9.03002 -8.82291 -8.36985 -8.18926 -6.46409 -6.18452 -3.88724 2.25941 2.90159 2.96123 3.12180 3.25718 3.27895 3.31192 3.59248 3.83379 4.16050 4.23407 4.29059 4.39883 4.48720 4.59345 4.79853 4.87091 4.91283 4.97217 5.04598 5.08142 5.16466 5.19041 5.28667 5.31761 5.39049 5.45363 5.49635 5.62059 5.65082 5.73679 5.75858 5.78363 5.87888 5.93933 5.96061 6.04065 6.16524 6.18032 6.37311 6.52634 6.80843 6.89467 7.01323 7.61904 7.64881 7.84798 8.38103 8.62996 9.26611 10.88962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.002389 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.791150 B =11717.937158 C =12410.006558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.618 5.618 14 C 0.107 3.893 15 C -0.132 4.132 16 C -0.115 4.115 17 C 0.068 3.932 18 H 0.069 0.931 19 N -0.653 5.653 20 C 0.073 3.927 21 H 0.114 0.886 22 C -0.109 4.109 23 C -0.140 4.140 24 C 0.109 3.891 25 N -0.719 5.719 26 C 0.489 3.511 27 O -0.550 6.550 28 C 0.126 3.874 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.346 0.654 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.087 0.913 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.849 -28.011 -3.732 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.300 4.300 11 C 0.324 3.676 12 O -0.393 6.393 13 N -0.355 5.355 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.042 4.042 18 H 0.087 0.913 19 N -0.284 5.284 20 C -0.041 4.041 21 H 0.131 0.869 22 C -0.147 4.147 23 C -0.179 4.179 24 C -0.015 4.015 25 N -0.372 5.372 26 C 0.274 3.726 27 O -0.427 6.427 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.232 0.768 46 H 0.105 0.895 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.000 -27.741 -3.123 28.202 hybrid contribution 2.280 1.200 -1.456 2.960 sum 6.280 -26.541 -4.579 27.656 Atomic orbital electron populations 1.70014 1.05946 1.27509 1.46877 1.24989 0.95026 0.98996 0.94578 0.86231 0.79239 0.81269 0.78795 1.19947 1.20830 1.19933 1.22822 0.94857 0.91663 1.58927 0.91002 1.85383 1.05111 0.96308 1.96693 1.23550 1.06403 0.95400 1.04692 1.20320 0.86195 0.86197 0.74919 1.90674 1.15216 1.85260 1.48199 1.48050 1.06422 1.05665 1.75335 1.21734 0.80063 1.01536 0.98296 1.21894 1.00697 0.95096 0.99451 1.21627 0.94453 0.96928 1.02318 1.21996 0.95477 0.87602 0.99120 0.91259 1.60692 1.03423 1.07110 1.57199 1.21722 0.94058 1.01163 0.87147 0.86872 1.21631 0.96448 0.96440 1.00206 1.21919 0.98434 1.02981 0.94524 1.21419 0.92545 0.91547 0.96025 1.45607 1.45266 1.34311 1.12025 1.21452 0.80192 0.79497 0.91419 1.90783 1.35989 1.44277 1.71678 1.21402 1.00111 0.80634 0.97643 0.92165 0.89249 0.89279 0.89193 0.91380 0.91184 0.90439 0.91104 0.91815 0.83526 0.90915 0.89566 0.90594 0.89262 0.90502 0.91597 0.76839 0.89450 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.53 13.22 55.49 0.73 -25.79 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.17 4.50 36.01 0.16 -3.00 16 11 C 0.54 10.74 7.72 -10.98 -0.08 10.65 16 12 O -0.52 -12.29 15.27 5.56 0.08 -12.21 16 13 N -0.62 -9.47 2.97 -172.81 -0.51 -9.98 16 14 C 0.11 1.27 6.34 -3.71 -0.02 1.24 16 15 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 16 C -0.12 -1.15 5.17 -26.69 -0.14 -1.28 16 17 C 0.07 0.80 2.16 -67.62 -0.15 0.66 16 18 H 0.07 1.05 6.52 -51.93 -0.34 0.71 16 19 N -0.65 -6.25 5.96 -101.09 -0.60 -6.85 16 20 C 0.07 0.67 2.56 -69.08 -0.18 0.50 16 21 H 0.11 1.25 7.17 -51.93 -0.37 0.88 16 22 C -0.11 -0.67 5.63 -26.53 -0.15 -0.82 16 23 C -0.14 -0.65 6.02 -26.60 -0.16 -0.81 16 24 C 0.11 0.47 7.17 -4.48 -0.03 0.44 16 25 N -0.72 -5.32 5.45 -61.38 -0.33 -5.66 16 26 C 0.49 5.20 7.18 -11.87 -0.09 5.11 16 27 O -0.55 -8.10 15.84 5.55 0.09 -8.02 16 28 C 0.13 1.70 5.89 -3.74 -0.02 1.68 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.09 1.74 7.94 -51.92 -0.41 1.33 16 31 H 0.09 1.76 7.69 -51.92 -0.40 1.36 16 32 H 0.09 1.08 5.93 -51.93 -0.31 0.78 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.35 3.11 8.06 -39.29 -0.32 2.79 16 39 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.21 8.14 -51.92 -0.42 -0.22 16 45 H 0.40 2.71 8.80 -40.82 -0.36 2.35 16 46 H 0.09 1.36 6.38 -51.93 -0.33 1.03 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -36.66 383.81 -10.27 -46.93 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.45 Total: 3.37 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.82 Total: -0.31 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.72 Total: -48.28 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.66 -10.27 -46.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.806 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds