Wall clock time and date at job start Sat Apr 11 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48503 * 109.47147 * 270.00117 * 3 2 1 5 5 H 1.48497 * 109.47040 * 30.00434 * 3 2 1 6 6 H 1.48503 * 109.47171 * 150.00393 * 3 2 1 7 7 C 1.38794 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00221 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99960 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47028 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00007 * 180.02562 * 13 11 10 15 15 H 1.09003 * 109.47356 * 34.72217 * 14 13 11 16 16 C 1.52997 * 109.47135 * 274.71988 * 14 13 11 17 17 C 1.53002 * 109.47304 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.46974 * 59.99992 * 17 16 14 19 19 C 1.52998 * 109.47450 * 300.00294 * 18 17 16 20 20 C 1.52998 * 109.47067 * 154.72027 * 14 13 11 21 21 H 1.09000 * 109.47071 * 60.00384 * 20 14 13 22 22 N 1.46892 * 109.47385 * 299.99842 * 20 14 13 23 23 C 1.46899 * 111.00228 * 154.57141 * 22 20 14 24 24 H 1.09005 * 110.43459 * 36.19343 * 23 22 20 25 25 C 1.54630 * 110.48947 * 273.64715 * 23 22 20 26 26 C 1.54478 * 101.76755 * 216.52313 * 25 23 22 27 27 N 1.46766 * 105.47297 * 25.41748 * 26 25 23 28 28 C 1.34655 * 111.33626 * 342.86592 * 27 26 25 29 29 O 1.21273 * 125.07327 * 180.50957 * 28 27 26 30 30 H 0.96997 * 119.99818 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46926 * 59.99945 * 10 9 7 32 32 H 1.08994 * 109.46880 * 299.99576 * 10 9 7 33 33 H 0.96999 * 119.99761 * 359.72111 * 13 11 10 34 34 H 1.09003 * 109.47185 * 300.00333 * 16 14 13 35 35 H 1.09000 * 109.47274 * 60.00178 * 16 14 13 36 36 H 1.09002 * 109.47358 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47279 * 300.00285 * 17 16 14 38 38 H 1.09003 * 109.46878 * 60.00048 * 18 17 16 39 39 H 1.09002 * 109.47093 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.47325 * 180.02562 * 19 18 17 41 41 H 1.09003 * 109.46879 * 299.99753 * 19 18 17 42 42 H 1.00899 * 111.00395 * 30.61961 * 22 20 14 43 43 H 1.09001 * 110.96827 * 334.64379 * 25 23 22 44 44 H 1.08999 * 110.96571 * 98.40389 * 25 23 22 45 45 H 1.08999 * 110.24460 * 144.41662 * 26 25 23 46 46 H 1.08999 * 110.24378 * 266.41987 * 26 25 23 47 47 H 0.96998 * 124.34908 * 162.98737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7914 -5.5023 0.0010 13 7 2.8444 -6.3430 0.0007 14 6 2.3307 -7.7149 0.0008 15 1 1.4125 -7.7592 -0.5850 16 6 2.0400 -8.1506 1.4383 17 6 1.5029 -9.5833 1.4384 18 6 2.5454 -10.5188 0.8228 19 6 2.8362 -10.0831 -0.6147 20 6 3.3737 -8.6501 -0.6145 21 1 4.2919 -8.6059 -0.0287 22 7 3.6528 -8.2318 -1.9947 23 6 4.9954 -8.6572 -2.4125 24 1 5.2366 -9.6304 -1.9847 25 6 6.0503 -7.6063 -1.9956 26 6 7.0304 -7.6534 -3.1887 27 7 6.2370 -8.1275 -4.3287 28 6 5.0903 -8.7041 -3.9216 29 8 4.2551 -9.1886 -4.6554 30 1 -0.4850 0.8400 0.0004 31 1 3.1246 -3.7312 0.8894 32 1 3.1246 -3.7313 -0.8905 33 1 3.8012 -6.1834 -0.0033 34 1 2.9582 -8.1064 2.0241 35 1 1.2970 -7.4844 1.8767 36 1 1.2962 -9.8938 2.4626 37 1 0.5846 -9.6271 0.8527 38 1 3.4637 -10.4750 1.4085 39 1 2.1630 -11.5395 0.8233 40 1 3.5786 -10.7499 -1.0533 41 1 1.9179 -10.1269 -1.2004 42 1 3.5404 -7.2347 -2.1002 43 1 5.5999 -6.6184 -1.8995 44 1 6.5474 -7.8984 -1.0706 45 1 7.4253 -6.6580 -3.3919 46 1 7.8445 -8.3478 -2.9808 47 1 6.5050 -8.0387 -5.2567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224910831.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:40 Heat of formation + Delta-G solvation = -82.196463 kcal Electronic energy + Delta-G solvation = -27958.394811 eV Core-core repulsion = 24073.362112 eV Total energy + Delta-G solvation = -3885.032699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85137 -39.85349 -38.13097 -36.65724 -34.92518 -34.01103 -32.44684 -30.82829 -30.48064 -29.04575 -28.00696 -26.27223 -25.49308 -23.01295 -22.43744 -21.81538 -20.65549 -20.26304 -19.91654 -17.96554 -17.66918 -17.19442 -16.37423 -16.33950 -15.66291 -15.26987 -15.00279 -14.82483 -14.61720 -14.37270 -14.21537 -14.04438 -14.04081 -13.82571 -13.46386 -13.20954 -13.07370 -12.85732 -12.59173 -12.46210 -12.36342 -11.93848 -11.75230 -11.53677 -11.30297 -11.08620 -11.04624 -11.01304 -10.82180 -10.77696 -10.39541 -10.13282 -9.83401 -9.45192 -9.40356 -9.09018 -8.94515 -8.69685 -8.25512 -6.51783 -6.23450 -3.94178 2.31237 2.96219 2.98023 3.05252 3.20504 3.25783 3.29229 3.62622 3.67184 3.98730 4.13097 4.18299 4.34454 4.45018 4.55289 4.71114 4.77163 4.92602 4.94432 5.01177 5.05627 5.09510 5.11622 5.12551 5.26825 5.28777 5.33479 5.40026 5.56450 5.61223 5.70150 5.81750 5.85264 5.86807 5.97465 6.03744 6.08473 6.15830 6.23247 6.40875 6.58751 6.67281 6.68562 6.99353 7.57062 7.62310 8.01703 8.32866 8.57246 9.21784 10.83919 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.002951 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.016953 B = 9486.527717 C =11420.347881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.510 6.510 13 N -0.740 5.740 14 C 0.145 3.855 15 H 0.099 0.901 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.105 4.105 20 C 0.087 3.913 21 H 0.052 0.948 22 N -0.664 5.664 23 C 0.058 3.942 24 H 0.115 0.885 25 C -0.170 4.170 26 C 0.106 3.894 27 N -0.739 5.739 28 C 0.524 3.476 29 O -0.509 6.509 30 H 0.269 0.731 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.392 0.608 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.353 0.647 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.759 -20.858 -0.279 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.383 6.383 13 N -0.394 5.394 14 C 0.040 3.960 15 H 0.117 0.883 16 C -0.166 4.166 17 C -0.156 4.156 18 C -0.158 4.158 19 C -0.144 4.144 20 C -0.023 4.023 21 H 0.070 0.930 22 N -0.297 5.297 23 C -0.056 4.056 24 H 0.133 0.867 25 C -0.210 4.210 26 C -0.020 4.020 27 N -0.396 5.396 28 C 0.308 3.692 29 O -0.381 6.381 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.175 0.825 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.734 -21.879 -0.835 25.846 hybrid contribution 3.346 2.170 0.123 3.991 sum 17.080 -19.708 -0.712 26.089 Atomic orbital electron populations 1.70016 1.05946 1.27482 1.46751 1.24988 0.95016 0.99011 0.94524 0.86179 0.79397 0.81625 0.78353 1.20266 1.20734 1.19723 1.22859 0.94862 0.91709 1.59065 0.90994 1.85442 1.04724 0.96234 1.96697 1.23535 1.06667 0.95525 1.04739 1.20301 0.86599 0.86164 0.74973 1.90717 1.15260 1.85455 1.46863 1.46145 1.09542 1.05567 1.78172 1.21087 0.98047 0.80116 0.96750 0.88341 1.21906 1.01757 0.96846 0.96105 1.21519 0.98854 0.94174 1.01085 1.21574 0.99218 0.99202 0.95777 1.21538 1.02224 0.93976 0.96652 1.21821 0.97260 0.95786 0.87416 0.93021 1.60141 1.24802 1.21642 1.23110 1.22291 0.89068 1.00287 0.93934 0.86693 1.23453 0.97991 1.00663 0.98896 1.21965 0.93926 1.00523 0.85549 1.46238 1.22090 1.61703 1.09615 1.20733 0.80759 0.76903 0.90758 1.90758 1.41876 1.44668 1.60821 0.92152 0.89328 0.89393 0.77478 0.91959 0.90672 0.91695 0.91402 0.92156 0.91619 0.91820 0.90551 0.82518 0.89536 0.88909 0.90050 0.90965 0.75069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.41 7.82 -10.99 -0.09 9.32 16 12 O -0.51 -11.20 15.52 5.55 0.09 -11.12 16 13 N -0.74 -8.93 4.14 -53.81 -0.22 -9.15 16 14 C 0.15 1.63 2.02 -67.94 -0.14 1.49 16 15 H 0.10 1.42 7.57 -51.93 -0.39 1.03 16 16 C -0.13 -1.33 5.50 -26.73 -0.15 -1.48 16 17 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 18 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 19 C -0.11 -0.89 5.42 -26.70 -0.14 -1.03 16 20 C 0.09 0.75 1.91 -67.69 -0.13 0.62 16 21 H 0.05 0.36 7.73 -51.93 -0.40 -0.04 16 22 N -0.66 -6.55 6.12 -99.72 -0.61 -7.16 16 23 C 0.06 0.46 3.00 -67.72 -0.20 0.26 16 24 H 0.12 0.79 7.24 -51.93 -0.38 0.41 16 25 C -0.17 -0.84 6.66 -25.10 -0.17 -1.00 16 26 C 0.11 0.46 7.78 -3.12 -0.02 0.44 16 27 N -0.74 -5.35 6.25 -59.14 -0.37 -5.72 16 28 C 0.52 5.66 8.09 -10.75 -0.09 5.57 16 29 O -0.51 -7.98 18.02 5.56 0.10 -7.88 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 32 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.39 3.53 8.60 -40.82 -0.35 3.18 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.50 7.49 -51.93 -0.39 0.11 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.35 3.79 7.03 -39.29 -0.28 3.52 16 43 H 0.09 0.47 7.66 -51.93 -0.40 0.07 16 44 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.41 2.52 8.96 -40.82 -0.37 2.16 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -36.64 392.00 -10.20 -46.84 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.57 Total: 4.71 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.02 Total: -3.58 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.47 Total: -47.28 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.19 Total: -18.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.64 -10.20 -46.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224910831.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.353 kcal (2) G-P(sol) polarization free energy of solvation -36.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds