Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99885 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00405 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00228 * 3 2 1 7 7 C 1.38803 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 180.27695 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47209 * 34.99599 * 14 13 11 16 16 C 1.52999 * 109.47118 * 274.99901 * 14 13 11 17 17 C 1.53003 * 109.47468 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46777 * 59.99664 * 17 16 14 19 19 C 1.52994 * 109.47424 * 299.99851 * 18 17 16 20 20 C 1.52996 * 109.47534 * 154.99528 * 14 13 11 21 21 H 1.09005 * 109.46815 * 59.99829 * 20 14 13 22 22 N 1.46901 * 109.47262 * 300.00126 * 20 14 13 23 23 C 1.46902 * 111.00136 * 154.99661 * 22 20 14 24 24 H 1.09000 * 110.43519 * 32.45901 * 23 22 20 25 25 C 1.54629 * 110.48709 * 155.00100 * 23 22 20 26 26 C 1.54476 * 101.76367 * 93.88090 * 25 23 22 27 27 N 1.46760 * 105.47532 * 25.41344 * 26 25 23 28 28 C 1.34416 * 111.30527 * 342.98655 * 27 26 25 29 29 O 1.21277 * 124.94605 * 180.44163 * 28 27 26 30 30 H 0.97005 * 119.99878 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 32 32 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 33 33 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 34 34 H 1.09005 * 109.46834 * 299.99928 * 16 14 13 35 35 H 1.09000 * 109.47203 * 59.99373 * 16 14 13 36 36 H 1.09004 * 109.46582 * 299.99734 * 17 16 14 37 37 H 1.08996 * 109.47237 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.47143 * 180.02562 * 18 17 16 39 39 H 1.08996 * 109.47280 * 60.00815 * 18 17 16 40 40 H 1.08996 * 109.47680 * 300.00720 * 19 18 17 41 41 H 1.09001 * 109.47475 * 179.97438 * 19 18 17 42 42 H 1.00901 * 110.99675 * 31.04237 * 22 20 14 43 43 H 1.08999 * 110.97055 * 212.00257 * 25 23 22 44 44 H 1.09005 * 110.96600 * 335.76467 * 25 23 22 45 45 H 1.09004 * 110.24454 * 144.41891 * 26 25 23 46 46 H 1.09006 * 110.24677 * 266.41752 * 26 25 23 47 47 H 0.97003 * 124.34774 * 162.97595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0068 10 6 4.0865 -2.9846 0.0117 11 6 5.5729 -3.2327 0.0178 12 8 6.3439 -2.2965 0.0192 13 7 6.0455 -4.4948 0.0216 14 6 7.4905 -4.7360 0.0281 15 1 7.9850 -3.9646 0.6185 16 6 8.0203 -4.6981 -1.4067 17 6 9.5295 -4.9493 -1.4000 18 6 9.8153 -6.3216 -0.7869 19 6 9.2856 -6.3595 0.6480 20 6 7.7758 -6.1085 0.6410 21 1 7.2813 -6.8799 0.0506 22 7 7.2672 -6.1449 2.0187 23 6 6.9718 -7.5225 2.4346 24 1 7.6607 -8.2199 1.9580 25 6 7.0494 -7.6516 3.9735 26 6 5.5761 -7.4319 4.3828 27 7 4.7819 -7.8262 3.2133 28 6 5.5393 -7.8797 2.1041 29 8 5.1333 -8.1712 0.9991 30 1 -0.4850 0.8401 0.0004 31 1 3.6398 -3.4299 0.9007 32 1 3.6473 -3.4334 -0.8793 33 1 5.4288 -5.2436 0.0209 34 1 7.5258 -5.4695 -1.9971 35 1 7.8170 -3.7203 -1.8434 36 1 10.0236 -4.1775 -0.8097 37 1 9.9069 -4.9227 -2.4222 38 1 10.8905 -6.5004 -0.7816 39 1 9.3213 -7.0933 -1.3771 40 1 9.7797 -5.5878 1.2382 41 1 9.4888 -7.3373 1.0846 42 1 6.4552 -5.5546 2.1200 43 1 7.3913 -8.6447 4.2649 44 1 7.6914 -6.8796 4.3978 45 1 5.3248 -8.0589 5.2383 46 1 5.4030 -6.3821 4.6197 47 1 3.8324 -8.0231 3.2377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224910838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = -84.488424 kcal Electronic energy + Delta-G solvation = -28299.898816 eV Core-core repulsion = 24414.766730 eV Total energy + Delta-G solvation = -3885.132086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02221 -39.86311 -38.15176 -36.76569 -34.80193 -34.03933 -32.43752 -30.96283 -30.54116 -29.11267 -28.00192 -26.37710 -25.60446 -22.93670 -22.21613 -21.98688 -20.71937 -20.34715 -19.97660 -17.97927 -17.71086 -16.87374 -16.72828 -16.43090 -15.82067 -15.17454 -15.08789 -14.94850 -14.64942 -14.48074 -14.21566 -14.06860 -14.00493 -13.80588 -13.47093 -13.31830 -12.95602 -12.81886 -12.78378 -12.62492 -12.05221 -11.88008 -11.70028 -11.56022 -11.32949 -11.27005 -11.00996 -10.98491 -10.86053 -10.61870 -10.59690 -10.36876 -9.85164 -9.49285 -9.48486 -9.01970 -8.96419 -8.79629 -8.50030 -6.91485 -6.28810 -4.00448 2.14546 2.75580 2.95977 2.98507 3.29185 3.33906 3.50298 3.59921 3.65776 3.92726 4.13169 4.33024 4.35072 4.51799 4.62853 4.71117 4.74587 4.79399 4.93420 5.02452 5.05067 5.10244 5.14468 5.16674 5.21668 5.25747 5.39505 5.47519 5.51451 5.58018 5.67308 5.75691 5.81539 5.84603 5.94829 5.97221 6.02195 6.13644 6.20894 6.37386 6.52606 6.58559 6.63461 6.84857 7.58391 7.85377 7.94281 8.42021 8.48502 9.17311 10.80504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003222 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.840237 B = 8686.965499 C =10417.526336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.087 0.913 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.738 5.738 14 C 0.147 3.853 15 H 0.097 0.903 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.101 4.101 20 C 0.076 3.924 21 H 0.062 0.938 22 N -0.656 5.656 23 C 0.055 3.945 24 H 0.112 0.888 25 C -0.126 4.126 26 C 0.096 3.904 27 N -0.728 5.728 28 C 0.485 3.515 29 O -0.529 6.529 30 H 0.271 0.729 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.397 0.603 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.350 0.650 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.975 -19.558 7.298 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.105 0.895 9 S 0.088 5.912 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.392 5.392 14 C 0.042 3.958 15 H 0.115 0.885 16 C -0.168 4.168 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.140 4.140 20 C -0.034 4.034 21 H 0.080 0.920 22 N -0.289 5.289 23 C -0.059 4.059 24 H 0.130 0.870 25 C -0.164 4.164 26 C -0.029 4.029 27 N -0.384 5.384 28 C 0.269 3.731 29 O -0.404 6.404 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.171 0.829 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 20.611 -17.992 7.008 28.243 hybrid contribution -2.591 -0.994 -0.429 2.808 sum 18.020 -18.986 6.579 26.991 Atomic orbital electron populations 1.69943 1.05934 1.27753 1.48107 1.24713 0.94442 0.98952 0.93169 0.86734 0.81894 0.83261 0.79954 1.19201 1.19936 1.15894 1.22329 0.88350 0.97525 1.58757 0.89460 1.84751 1.09190 0.99890 1.97416 1.23289 0.94138 1.04434 1.05702 1.20251 0.90499 0.82270 0.75025 1.90696 1.58681 1.42059 1.47459 1.46164 1.07334 1.08137 1.77570 1.21074 0.81167 0.96664 0.96892 0.88462 1.21923 0.95754 1.02950 0.96201 1.21505 0.95653 0.97192 1.01127 1.21578 1.00836 0.97636 0.95879 1.21500 0.93350 1.02297 0.96861 1.21956 0.96832 0.96763 0.87857 0.91984 1.60748 1.37753 1.06543 1.23871 1.22450 0.93078 0.92730 0.97637 0.87040 1.22708 0.95991 1.03987 0.93750 1.22183 0.91079 1.01280 0.88349 1.46283 1.12492 1.69872 1.09783 1.21968 0.90462 0.76437 0.84281 1.90780 1.78616 1.47866 1.23153 0.91948 0.88720 0.88592 0.76908 0.91782 0.90723 0.91488 0.91669 0.91569 0.91974 0.90722 0.91718 0.82927 0.89649 0.87694 0.90054 0.90494 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.89 27.74 -169.99 -4.72 17.18 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.23 -5.98 6.73 56.52 0.38 -5.60 16 7 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.54 18.54 -107.50 -1.99 -5.54 16 10 C -0.12 -2.48 6.16 36.00 0.22 -2.26 16 11 C 0.53 9.56 7.81 -10.99 -0.09 9.47 16 12 O -0.51 -10.96 15.52 5.56 0.09 -10.88 16 13 N -0.74 -9.95 4.14 -53.81 -0.22 -10.17 16 14 C 0.15 1.72 2.02 -67.93 -0.14 1.59 16 15 H 0.10 1.33 7.58 -51.93 -0.39 0.93 16 16 C -0.13 -1.45 5.49 -26.73 -0.15 -1.60 16 17 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 18 C -0.12 -0.90 5.92 -26.74 -0.16 -1.06 16 19 C -0.10 -0.78 5.41 -26.71 -0.14 -0.92 16 20 C 0.08 0.71 1.90 -67.69 -0.13 0.58 16 21 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 22 N -0.66 -5.75 6.12 -99.72 -0.61 -6.36 16 23 C 0.05 0.41 3.01 -67.72 -0.20 0.21 16 24 H 0.11 0.80 7.21 -51.93 -0.37 0.43 16 25 C -0.13 -0.61 6.89 -25.10 -0.17 -0.79 16 26 C 0.10 0.49 7.78 -3.13 -0.02 0.46 16 27 N -0.73 -5.54 6.24 -59.20 -0.37 -5.91 16 28 C 0.49 4.93 7.74 -10.86 -0.08 4.84 16 29 O -0.53 -7.54 17.86 5.56 0.10 -7.44 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 32 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 33 H 0.40 4.96 8.60 -40.82 -0.35 4.61 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 7.50 -51.93 -0.39 0.05 16 42 H 0.35 3.61 7.27 -39.29 -0.29 3.32 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.41 2.87 8.96 -40.82 -0.37 2.50 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -35.08 389.60 -9.72 -44.79 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.63 Total: 7.27 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.01 Total: -2.83 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.43 Total: -48.44 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.19 Total: -18.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.08 -9.72 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224910838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.696 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds