Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00407 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47111 * 30.00210 * 3 2 1 6 6 H 1.48498 * 109.47027 * 150.00399 * 3 2 1 7 7 C 1.38800 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99917 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00193 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46934 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00058 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99813 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99832 * 179.72227 * 13 11 10 15 15 C 1.53124 * 109.52623 * 275.14907 * 14 13 11 16 16 C 1.53045 * 109.27679 * 182.50385 * 15 14 13 17 17 N 1.46846 * 109.57351 * 59.08559 * 16 15 14 18 18 C 1.46896 * 110.99738 * 174.18976 * 17 16 15 19 19 H 1.08996 * 109.40259 * 176.56339 * 18 17 16 20 20 C 1.53071 * 109.40000 * 56.82127 * 18 17 16 21 21 C 1.53350 * 108.41352 * 190.95238 * 20 18 17 22 22 C 1.52911 * 108.68494 * 67.53519 * 21 20 18 23 23 N 1.45761 * 110.48698 * 309.25810 * 22 21 20 24 24 C 1.33356 * 124.10529 * 19.06015 * 23 22 21 25 25 O 1.21278 * 118.24599 * 177.79611 * 24 23 22 26 26 C 1.46847 * 111.19787 * 298.28617 * 17 16 15 27 27 C 1.53042 * 109.51985 * 61.74639 * 26 17 16 28 28 H 0.97005 * 119.99836 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47165 * 60.00221 * 10 9 7 30 30 H 1.09004 * 109.46843 * 299.99876 * 10 9 7 31 31 H 0.96996 * 119.99552 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.52615 * 35.27845 * 14 13 11 33 33 H 1.08998 * 109.50055 * 302.38514 * 15 14 13 34 34 H 1.09007 * 109.49929 * 62.49886 * 15 14 13 35 35 H 1.09001 * 109.41055 * 299.06755 * 16 15 14 36 36 H 1.08998 * 109.46066 * 179.13321 * 16 15 14 37 37 H 1.08994 * 109.67785 * 310.70313 * 20 18 17 38 38 H 1.09002 * 109.67111 * 71.23791 * 20 18 17 39 39 H 1.09008 * 109.58354 * 307.77654 * 21 20 18 40 40 H 1.09004 * 109.60932 * 187.30211 * 21 20 18 41 41 H 1.09001 * 109.30242 * 188.95174 * 22 21 20 42 42 H 1.08997 * 109.13963 * 69.46316 * 22 21 20 43 43 H 0.97000 * 117.94560 * 199.07484 * 23 22 21 44 44 H 1.08997 * 109.46591 * 301.73087 * 26 17 16 45 45 H 1.09000 * 109.46196 * 181.75497 * 26 17 16 46 46 H 1.09002 * 109.49878 * 180.87496 * 27 26 17 47 47 H 1.08999 * 109.53980 * 60.78024 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3433 -0.0018 14 6 2.3300 -7.7151 0.0037 15 6 2.0347 -8.1453 1.4434 16 6 1.5578 -9.5995 1.4484 17 7 2.5944 -10.4593 0.8632 18 6 2.2284 -11.8773 0.9773 19 1 2.9839 -12.4873 0.4822 20 6 0.8718 -12.1078 0.3067 21 6 0.3836 -13.5148 0.6723 22 6 0.0682 -13.5506 2.1681 23 7 1.1886 -13.0253 2.9384 24 6 2.1524 -12.2578 2.4281 25 8 3.0138 -11.8453 3.1755 26 6 2.8597 -10.0950 -0.5344 27 6 3.3770 -8.6561 -0.5985 28 1 -0.4850 0.8401 0.0004 29 1 3.1242 -3.7315 0.8894 30 1 3.1242 -3.7315 -0.8906 31 1 3.8005 -6.1836 -0.0022 32 1 1.4145 -7.7637 -0.5859 33 1 2.9413 -8.0584 2.0422 34 1 1.2583 -7.5051 1.8624 35 1 0.6430 -9.6827 0.8617 36 1 1.3614 -9.9137 2.4735 37 1 0.1560 -11.3667 0.6623 38 1 0.9786 -12.0261 -0.7750 39 1 1.1628 -14.2424 0.4451 40 1 -0.5161 -13.7492 0.1031 41 1 -0.1260 -14.5796 2.4708 42 1 -0.8172 -12.9450 2.3613 43 1 1.2363 -13.2482 3.8812 44 1 1.9388 -10.1759 -1.1119 45 1 3.6090 -10.7691 -0.9495 46 1 3.5590 -8.3809 -1.6374 47 1 4.3055 -8.5770 -0.0331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = -71.510942 kcal Electronic energy + Delta-G solvation = -27508.669110 eV Core-core repulsion = 23624.099770 eV Total energy + Delta-G solvation = -3884.569340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17676 -39.60309 -38.24925 -36.77367 -35.18132 -32.86713 -32.41182 -31.32540 -31.12982 -29.35375 -28.03574 -25.51800 -25.18145 -23.61749 -23.14986 -22.73440 -20.35351 -20.12035 -19.11218 -17.81690 -17.74861 -16.80769 -16.61600 -16.24687 -15.93023 -15.38522 -15.15177 -15.00907 -14.78896 -14.57109 -14.44510 -14.14357 -13.96124 -13.82105 -13.52644 -13.36187 -13.05091 -12.63220 -12.43041 -12.31141 -12.14018 -11.87982 -11.83749 -11.79739 -11.51993 -11.18496 -11.05154 -11.00626 -10.88467 -10.76249 -10.61778 -9.99516 -9.79338 -9.46805 -9.34288 -9.05325 -8.82535 -8.57913 -8.21561 -6.47931 -6.20132 -3.90307 2.29345 2.81262 3.06083 3.13321 3.23653 3.29294 3.33949 3.50133 3.74450 4.07346 4.15147 4.21016 4.22234 4.37305 4.52350 4.69673 4.74059 4.79927 4.91352 4.98138 5.03030 5.06664 5.14980 5.15385 5.20168 5.27839 5.30539 5.37187 5.43679 5.46307 5.55748 5.64025 5.71603 5.77229 5.85896 5.93334 6.06115 6.17524 6.25031 6.36496 6.61119 6.71853 6.73168 6.96022 7.61366 7.77665 7.92405 8.37000 8.66229 9.25288 10.87302 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.001894 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.604867 B =14780.384996 C =14925.595938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.734 5.734 14 C 0.147 3.853 15 C -0.126 4.126 16 C 0.057 3.943 17 N -0.514 5.514 18 C 0.077 3.923 19 H 0.113 0.887 20 C -0.165 4.165 21 C -0.132 4.132 22 C 0.109 3.891 23 N -0.725 5.725 24 C 0.522 3.478 25 O -0.528 6.528 26 C 0.061 3.939 27 C -0.123 4.123 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.400 0.600 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -31.009 -0.173 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.042 3.958 15 C -0.165 4.165 16 C -0.071 4.071 17 N -0.238 5.238 18 C -0.035 4.035 19 H 0.130 0.870 20 C -0.204 4.204 21 C -0.171 4.171 22 C -0.016 4.016 23 N -0.379 5.379 24 C 0.307 3.693 25 O -0.403 6.403 26 C -0.067 4.067 27 C -0.161 4.161 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.235 0.765 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.417 -30.844 0.237 30.940 hybrid contribution 1.567 1.042 -0.091 1.884 sum 3.984 -29.802 0.146 30.068 Atomic orbital electron populations 1.70020 1.05946 1.27412 1.46954 1.24995 0.95037 0.99034 0.94575 0.86165 0.79429 0.81566 0.78327 1.20288 1.20767 1.19687 1.22873 0.94918 0.91670 1.58828 0.90933 1.85370 1.05041 0.96330 1.96714 1.23536 1.06509 0.95470 1.04913 1.20308 0.86569 0.86299 0.74899 1.90686 1.15374 1.85605 1.47674 1.46057 1.09897 1.05198 1.77567 1.20899 0.97588 0.81008 0.96313 1.21980 1.02770 0.94380 0.97370 1.22124 0.92264 0.93096 0.99607 1.61917 1.43585 1.00323 1.18024 1.21591 0.97310 0.91896 0.92703 0.86969 1.22473 0.97972 0.97902 1.02076 1.21823 1.02816 0.97375 0.95065 1.21395 0.88877 0.99425 0.91891 1.45540 1.25780 1.52723 1.13857 1.19935 0.81025 0.77851 0.90470 1.90782 1.38075 1.52113 1.59313 1.22046 1.00196 0.96652 0.87770 1.21860 0.99327 0.93332 1.01615 0.92216 0.89224 0.89273 0.76804 0.89815 0.90703 0.90497 0.94053 0.90771 0.90205 0.90178 0.90807 0.89539 0.90416 0.91566 0.76474 0.94065 0.90097 0.90527 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.01 7.81 -10.98 -0.09 9.93 16 12 O -0.52 -11.74 15.53 5.56 0.09 -11.66 16 13 N -0.73 -10.01 5.08 -53.69 -0.27 -10.28 16 14 C 0.15 1.78 2.52 -67.81 -0.17 1.61 16 15 C -0.13 -1.58 5.67 -26.64 -0.15 -1.73 16 16 C 0.06 0.61 4.66 -3.83 -0.02 0.60 16 17 N -0.51 -4.91 4.38 -228.34 -1.00 -5.91 16 18 C 0.08 0.60 2.41 -69.08 -0.17 0.43 16 19 H 0.11 0.76 8.03 -51.93 -0.42 0.35 16 20 C -0.17 -0.90 4.61 -26.51 -0.12 -1.02 16 21 C -0.13 -0.45 6.02 -26.60 -0.16 -0.61 16 22 C 0.11 0.40 7.17 -4.49 -0.03 0.36 16 23 N -0.72 -4.76 5.45 -61.39 -0.33 -5.09 16 24 C 0.52 5.10 6.02 -11.87 -0.07 5.03 16 25 O -0.53 -7.59 17.44 5.56 0.10 -7.49 16 26 C 0.06 0.48 5.10 -3.83 -0.02 0.46 16 27 C -0.12 -1.09 5.57 -26.65 -0.15 -1.24 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 31 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 32 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.42 6.36 -51.93 -0.33 0.09 16 36 H 0.07 0.88 6.97 -51.93 -0.36 0.52 16 37 H 0.08 0.53 5.92 -51.93 -0.31 0.22 16 38 H 0.08 0.38 7.30 -51.93 -0.38 0.00 16 39 H 0.07 0.23 8.12 -51.92 -0.42 -0.19 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.40 2.36 8.80 -40.82 -0.36 2.01 16 44 H 0.04 0.30 7.06 -51.93 -0.37 -0.06 16 45 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -37.21 383.42 -10.33 -47.53 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.45 Total: 2.23 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.73 Total: -2.17 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.87 Total: -46.90 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.21 -10.33 -47.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.977 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds