Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48500 * 109.47145 * 239.99574 * 3 2 1 5 5 H 1.48496 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47088 * 120.00084 * 3 2 1 7 7 C 1.38800 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00145 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99957 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47024 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99825 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99733 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99699 * 180.02562 * 13 11 10 15 15 C 1.53118 * 109.52137 * 274.87410 * 14 13 11 16 16 C 1.53052 * 109.27528 * 182.50629 * 15 14 13 17 17 N 1.46844 * 109.57358 * 59.07978 * 16 15 14 18 18 C 1.46906 * 110.99890 * 174.19389 * 17 16 15 19 19 H 1.08999 * 109.39586 * 308.54944 * 18 17 16 20 20 C 1.53068 * 109.39830 * 68.37653 * 18 17 16 21 21 C 1.53345 * 108.42301 * 169.02692 * 20 18 17 22 22 C 1.52912 * 108.67721 * 292.47040 * 21 20 18 23 23 N 1.45750 * 110.48820 * 50.75275 * 22 21 20 24 24 C 1.33353 * 124.10969 * 340.92535 * 23 22 21 25 25 O 1.21273 * 118.25048 * 182.22307 * 24 23 22 26 26 C 1.46844 * 111.20270 * 298.29007 * 17 16 15 27 27 C 1.53045 * 109.51987 * 61.74477 * 26 17 16 28 28 H 0.96995 * 120.00420 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46694 * 299.99808 * 10 9 7 30 30 H 1.08999 * 109.47158 * 59.99682 * 10 9 7 31 31 H 0.96995 * 119.99791 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.52172 * 34.99754 * 14 13 11 33 33 H 1.09005 * 109.50297 * 302.37970 * 15 14 13 34 34 H 1.08997 * 109.50971 * 62.50090 * 15 14 13 35 35 H 1.09003 * 109.40912 * 299.07002 * 16 15 14 36 36 H 1.08994 * 109.45678 * 179.12557 * 16 15 14 37 37 H 1.08995 * 109.67465 * 288.76499 * 20 18 17 38 38 H 1.09000 * 109.67222 * 49.29809 * 20 18 17 39 39 H 1.09007 * 109.60323 * 52.23232 * 21 20 18 40 40 H 1.09006 * 109.60248 * 172.71046 * 21 20 18 41 41 H 1.09007 * 109.29986 * 171.06141 * 22 21 20 42 42 H 1.09001 * 109.30291 * 290.64113 * 22 21 20 43 43 H 0.97008 * 117.94967 * 160.92568 * 23 22 21 44 44 H 1.09000 * 109.46414 * 301.73252 * 26 17 16 45 45 H 1.08998 * 109.45951 * 181.75163 * 26 17 16 46 46 H 1.09005 * 109.49840 * 180.88436 * 27 26 17 47 47 H 1.08994 * 109.50474 * 60.76465 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0000 13 7 2.8444 -6.3431 0.0022 14 6 2.3306 -7.7150 0.0012 15 6 2.0350 -8.1517 1.4388 16 6 1.5581 -9.6060 1.4371 17 7 2.5950 -10.4630 0.8482 18 6 2.2291 -11.8817 0.9556 19 1 1.9633 -12.1098 1.9878 20 6 1.0310 -12.1679 0.0469 21 6 0.8405 -13.6870 -0.0397 22 6 2.0283 -14.2874 -0.7926 23 7 3.2843 -13.8163 -0.2226 24 6 3.3973 -12.7308 0.5437 25 8 4.5023 -12.4123 0.9285 26 6 2.8607 -10.0924 -0.5476 27 6 3.3780 -8.6531 -0.6050 28 1 -0.4850 0.8400 0.0004 29 1 3.1252 -3.7317 -0.8875 30 1 3.1239 -3.7309 0.8925 31 1 3.8011 -6.1834 0.0025 32 1 1.4153 -7.7608 -0.5889 33 1 2.9414 -8.0676 2.0384 34 1 1.2584 -7.5137 1.8606 35 1 0.6435 -9.6867 0.8496 36 1 1.3616 -9.9249 2.4606 37 1 0.1353 -11.7089 0.4652 38 1 1.2203 -11.7645 -0.9478 39 1 0.7937 -14.1076 0.9648 40 1 -0.0824 -13.9098 -0.5753 41 1 1.9865 -15.3744 -0.7233 42 1 1.9779 -13.9910 -1.8403 43 1 4.0886 -14.3243 -0.4126 44 1 1.9400 -10.1707 -1.1258 45 1 3.6103 -10.7645 -0.9654 46 1 3.5602 -8.3731 -1.6426 47 1 4.3061 -8.5771 -0.0386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -71.456160 kcal Electronic energy + Delta-G solvation = -27453.176531 eV Core-core repulsion = 23568.609567 eV Total energy + Delta-G solvation = -3884.566965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19458 -39.61107 -38.25649 -36.79928 -35.18781 -32.87851 -32.41238 -31.34046 -31.12994 -29.36273 -28.03780 -25.52024 -25.19213 -23.68204 -23.10988 -22.73523 -20.27369 -20.21620 -19.13063 -17.80634 -17.76885 -16.81105 -16.61131 -16.25487 -16.02211 -15.36117 -15.16132 -14.93955 -14.78913 -14.63137 -14.46310 -14.13241 -13.94684 -13.84537 -13.67033 -13.26127 -13.07627 -12.62514 -12.42057 -12.34941 -12.02734 -11.94080 -11.83173 -11.80761 -11.61131 -11.13948 -11.03047 -11.02607 -10.89720 -10.76698 -10.63207 -10.01867 -9.80251 -9.50630 -9.34463 -9.04640 -8.83040 -8.58032 -8.22186 -6.48070 -6.19989 -3.90349 2.26651 2.77977 3.05969 3.12888 3.24921 3.28826 3.32912 3.49508 3.74289 4.06164 4.13859 4.18759 4.22347 4.36080 4.52978 4.68386 4.71562 4.82005 4.90649 4.96393 5.01371 5.03941 5.15049 5.15988 5.22910 5.26511 5.28701 5.37847 5.44479 5.46760 5.57435 5.60709 5.71658 5.76226 5.86270 5.92940 6.05605 6.17381 6.23107 6.33285 6.60009 6.71166 6.73187 6.92907 7.61047 7.77523 7.89180 8.36788 8.65842 9.25253 10.87377 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.036816 B = 0.001836 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.349620 B =15248.550417 C =15584.855657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.734 5.734 14 C 0.147 3.853 15 C -0.127 4.127 16 C 0.061 3.939 17 N -0.514 5.514 18 C 0.076 3.924 19 H 0.113 0.887 20 C -0.165 4.165 21 C -0.133 4.133 22 C 0.109 3.891 23 N -0.725 5.725 24 C 0.522 3.478 25 O -0.529 6.529 26 C 0.058 3.942 27 C -0.122 4.122 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.399 0.601 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -31.278 -1.371 31.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.394 6.394 13 N -0.387 5.387 14 C 0.042 3.958 15 C -0.166 4.166 16 C -0.067 4.067 17 N -0.238 5.238 18 C -0.036 4.036 19 H 0.131 0.869 20 C -0.204 4.204 21 C -0.171 4.171 22 C -0.015 4.015 23 N -0.380 5.380 24 C 0.308 3.692 25 O -0.403 6.403 26 C -0.070 4.070 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.235 0.765 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.080 -31.084 -0.845 31.247 hybrid contribution 1.912 0.912 -0.580 2.197 sum 4.993 -30.172 -1.425 30.615 Atomic orbital electron populations 1.70004 1.05942 1.27537 1.46857 1.24989 0.95030 0.99010 0.94553 0.86228 0.79236 0.81248 0.78808 1.19955 1.20823 1.19932 1.22835 0.94890 0.91695 1.58970 0.90984 1.85360 1.05012 0.96296 1.96722 1.23539 1.06521 0.95480 1.04915 1.20305 0.86563 0.86290 0.74897 1.90686 1.15358 1.85606 1.47701 1.46065 1.09915 1.05197 1.77551 1.20899 0.97547 0.80982 0.96371 1.22003 1.02771 0.94445 0.97424 1.22093 0.92037 0.92818 0.99775 1.61908 1.43389 1.00248 1.18282 1.21602 0.91350 0.89221 1.01392 0.86888 1.22467 0.99496 0.96726 1.01685 1.21825 0.98163 0.95389 1.01745 1.21396 0.83527 0.99244 0.97352 1.45554 1.11498 1.28624 1.52274 1.19961 0.90753 0.80672 0.77860 1.90776 1.26747 1.69147 1.53656 1.22086 0.99817 0.96690 0.88450 1.21841 0.99363 0.93247 1.01562 0.92154 0.89286 0.89222 0.76795 0.89812 0.90705 0.90291 0.94067 0.90205 0.90050 0.90320 0.90741 0.89521 0.90435 0.91653 0.76530 0.94015 0.90684 0.90726 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 9.95 7.81 -10.98 -0.09 9.87 16 12 O -0.52 -11.65 15.53 5.56 0.09 -11.56 16 13 N -0.73 -10.01 5.08 -53.69 -0.27 -10.29 16 14 C 0.15 1.78 2.52 -67.81 -0.17 1.61 16 15 C -0.13 -1.48 5.68 -26.64 -0.15 -1.63 16 16 C 0.06 0.57 5.11 -3.83 -0.02 0.55 16 17 N -0.51 -4.90 4.37 -228.33 -1.00 -5.90 16 18 C 0.08 0.59 2.40 -69.08 -0.17 0.43 16 19 H 0.11 0.82 8.01 -51.93 -0.42 0.40 16 20 C -0.16 -0.88 4.62 -26.52 -0.12 -1.00 16 21 C -0.13 -0.43 6.02 -26.60 -0.16 -0.59 16 22 C 0.11 0.34 7.17 -4.49 -0.03 0.31 16 23 N -0.73 -4.30 5.45 -61.39 -0.33 -4.64 16 24 C 0.52 4.84 6.05 -11.87 -0.07 4.76 16 25 O -0.53 -7.28 17.48 5.56 0.10 -7.18 16 26 C 0.06 0.53 4.63 -3.83 -0.02 0.51 16 27 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 31 H 0.40 4.40 8.60 -40.82 -0.35 4.05 16 32 H 0.08 1.17 7.58 -51.93 -0.39 0.77 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.37 7.09 -51.93 -0.37 0.00 16 36 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 37 H 0.08 0.42 7.32 -51.93 -0.38 0.04 16 38 H 0.08 0.46 5.90 -51.93 -0.31 0.16 16 39 H 0.07 0.24 8.12 -51.93 -0.42 -0.18 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.40 2.08 8.80 -40.82 -0.36 1.72 16 44 H 0.04 0.35 6.35 -51.93 -0.33 0.02 16 45 H 0.07 0.73 7.04 -51.93 -0.37 0.37 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -36.83 383.53 -10.33 -47.16 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.46 Total: 2.01 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.73 Total: -2.49 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.87 Total: -46.37 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.83 -10.33 -47.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.295 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds