Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00622 * 2 1 4 4 H 1.48501 * 109.46959 * 275.38648 * 3 2 1 5 5 H 1.48502 * 109.46930 * 35.38324 * 3 2 1 6 6 H 1.48499 * 109.47466 * 155.38483 * 3 2 1 7 7 C 1.38819 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00087 * 340.48660 * 7 2 1 9 9 N 1.36940 * 119.99813 * 160.47995 * 7 2 1 10 10 C 1.46497 * 119.99882 * 139.97232 * 9 7 2 11 11 C 1.52993 * 109.47375 * 86.85115 * 10 9 7 12 12 C 1.53002 * 109.47420 * 178.88144 * 11 10 9 13 13 N 1.46501 * 109.47360 * 175.37538 * 12 11 10 14 14 C 1.34773 * 120.00146 * 179.97438 * 13 12 11 15 15 O 1.21521 * 119.99578 * 359.97438 * 14 13 12 16 16 C 1.48146 * 120.00224 * 180.02562 * 14 13 12 17 17 C 1.39441 * 120.09546 * 180.02562 * 16 14 13 18 18 N 1.32090 * 119.86870 * 180.02562 * 17 16 14 19 19 C 1.32137 * 120.07045 * 359.97438 * 18 17 16 20 20 C 1.38726 * 120.19619 * 359.97438 * 19 18 17 21 21 N 1.31796 * 120.13062 * 359.72359 * 20 19 18 22 22 C 1.46494 * 120.00089 * 319.97146 * 9 7 2 23 23 C 1.50703 * 109.47319 * 269.99764 * 22 9 7 24 24 C 1.38669 * 120.42019 * 269.72587 * 23 22 9 25 25 C 1.38625 * 118.42043 * 179.78366 * 24 23 22 26 26 C 1.38228 * 119.16105 * 0.50661 * 25 24 23 27 27 N 1.31854 * 120.76238 * 359.73350 * 26 25 24 28 28 C 1.31882 * 121.72750 * 359.97438 * 27 26 25 29 29 H 0.97003 * 119.99869 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46946 * 326.85293 * 10 9 7 31 31 H 1.09001 * 109.47196 * 206.85594 * 10 9 7 32 32 H 1.09000 * 109.46951 * 58.88586 * 11 10 9 33 33 H 1.09000 * 109.47656 * 298.88189 * 11 10 9 34 34 H 1.08998 * 109.47026 * 55.36808 * 12 11 10 35 35 H 1.09006 * 109.46747 * 295.37457 * 12 11 10 36 36 H 0.97002 * 119.99552 * 0.02562 * 13 12 11 37 37 H 1.07993 * 120.06931 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.89951 * 180.02562 * 19 18 17 39 39 H 1.08008 * 119.93379 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47576 * 30.00136 * 22 9 7 41 41 H 1.09004 * 109.47210 * 149.99836 * 22 9 7 42 42 H 1.07999 * 120.78864 * 0.02562 * 24 23 22 43 43 H 1.08004 * 120.42061 * 180.21632 * 25 24 23 44 44 H 1.07999 * 119.61623 * 179.74962 * 26 25 24 45 45 H 1.08003 * 119.61810 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3840 2.1120 -1.3939 5 1 1.5093 2.6171 0.8107 6 1 3.6001 1.4098 0.5831 7 6 2.0102 -1.2023 0.0005 8 1 1.5167 -2.1105 0.3133 9 7 3.3205 -1.2366 -0.3957 10 6 4.2817 -2.0757 0.3241 11 6 4.2626 -3.4894 -0.2606 12 6 5.2864 -4.3585 0.4727 13 7 5.1913 -5.7382 -0.0107 14 6 6.0031 -6.6872 0.4960 15 8 6.8141 -6.3983 1.3536 16 6 5.9073 -8.0823 0.0068 17 6 6.7459 -9.0659 0.5301 18 7 6.6570 -10.3082 0.0903 19 6 5.7750 -10.6185 -0.8434 20 6 4.9387 -9.6425 -1.3653 21 7 5.0165 -8.4016 -0.9279 22 6 3.7612 -0.4342 -1.5394 23 6 3.6202 -1.2418 -2.8039 24 6 4.6701 -2.0264 -3.2566 25 6 4.4938 -2.7560 -4.4221 26 6 3.2896 -2.6694 -5.0952 27 7 2.3145 -1.9088 -4.6378 28 6 2.4449 -1.2057 -3.5297 29 1 -0.4850 0.8401 -0.0004 30 1 4.0108 -2.1153 1.3792 31 1 5.2813 -1.6534 0.2212 32 1 4.5142 -3.4477 -1.3203 33 1 3.2683 -3.9193 -0.1398 34 1 5.0835 -4.3337 1.5433 35 1 6.2894 -3.9757 0.2840 36 1 4.5446 -5.9684 -0.6961 37 1 7.4671 -8.8123 1.2929 38 1 5.7045 -11.6353 -1.2007 39 1 4.2196 -9.9007 -2.1286 40 1 3.1474 0.4637 -1.6114 41 1 4.8049 -0.1507 -1.4038 42 1 5.6017 -2.0712 -2.7119 43 1 5.2890 -3.3804 -4.8019 44 1 3.1458 -3.2314 -6.0061 45 1 1.6237 -0.5942 -3.1858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230656054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 75.006571 kcal Electronic energy + Delta-G solvation = -28645.894035 eV Core-core repulsion = 24664.526971 eV Total energy + Delta-G solvation = -3981.367064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59470 -39.68977 -39.42506 -36.74074 -35.27913 -34.71558 -32.39007 -32.35339 -31.89148 -31.38965 -30.07051 -26.65525 -25.92451 -25.25429 -24.67493 -23.01160 -22.56162 -21.49869 -21.15180 -20.39374 -18.37302 -17.94109 -17.16801 -17.04265 -16.59757 -16.03685 -15.93522 -15.80070 -15.36444 -15.27048 -14.98414 -14.56252 -14.36285 -13.94932 -13.72724 -13.39302 -13.22281 -13.10741 -12.75231 -12.63426 -12.55855 -12.14130 -12.09333 -11.78103 -11.67693 -11.47037 -11.25308 -10.93304 -10.77614 -10.55613 -10.23670 -10.06298 -9.90027 -9.80751 -9.54579 -9.27167 -9.10305 -8.96684 -8.65538 -8.43422 -6.98289 -6.11566 -3.59326 -0.01609 0.59979 1.61859 1.74738 2.46607 2.85521 3.21000 3.39033 3.41215 3.42002 3.60036 3.75327 4.01023 4.26370 4.39743 4.44317 4.70620 4.80227 4.87294 4.93155 5.07840 5.16002 5.17974 5.31765 5.39171 5.44764 5.50243 5.60094 5.69515 5.81188 5.82113 5.91152 5.98044 6.16416 6.23103 6.30760 6.36867 6.41373 6.53597 6.59880 6.66391 6.80355 6.84643 7.14095 7.23848 7.41332 7.91906 7.96669 8.27172 8.48721 8.82261 9.55303 9.94398 11.02669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.002818 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.795433 B = 9932.904295 C =11139.220468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.042 3.958 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.273 4.273 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.155 3.845 11 C -0.155 4.155 12 C 0.118 3.882 13 N -0.701 5.701 14 C 0.570 3.430 15 O -0.532 6.532 16 C 0.032 3.968 17 C 0.108 3.892 18 N -0.441 5.441 19 C 0.070 3.930 20 C 0.051 3.949 21 N -0.411 5.411 22 C 0.169 3.831 23 C -0.126 4.126 24 C -0.078 4.078 25 C -0.182 4.182 26 C 0.076 3.924 27 N -0.488 5.488 28 C 0.120 3.880 29 H 0.266 0.734 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.183 0.817 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.144 0.856 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 -15.420 -5.351 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.401 4.401 8 H 0.096 0.904 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.195 4.195 12 C -0.005 4.005 13 N -0.352 5.352 14 C 0.353 3.647 15 O -0.408 6.408 16 C -0.109 4.109 17 C -0.052 4.052 18 N -0.155 5.155 19 C -0.091 4.091 20 C -0.111 4.111 21 N -0.129 5.129 22 C 0.043 3.957 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.202 4.202 26 C -0.082 4.082 27 N -0.197 5.197 28 C -0.037 4.037 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.200 0.800 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.161 0.839 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.884 -14.967 -5.085 19.776 hybrid contribution 0.696 0.477 -0.074 0.847 sum 12.579 -14.490 -5.159 19.870 Atomic orbital electron populations 1.69846 1.06013 1.27002 1.50294 1.25507 0.95043 0.97847 0.97607 0.86943 0.80790 0.84494 0.77191 1.21121 1.22705 1.19100 1.18708 0.84938 0.94130 1.42355 0.90409 1.44076 1.07236 1.51791 1.28124 1.20784 0.92223 0.88399 0.95812 1.22540 0.98483 0.98107 1.00376 1.21555 1.00338 0.79238 0.99404 1.45985 1.38119 1.09205 1.41841 1.17644 0.81607 0.83421 0.82021 1.90810 1.37137 1.81321 1.31550 1.22305 0.95615 0.96707 0.96273 1.23866 0.96494 0.87702 0.97112 1.68643 1.18303 1.18916 1.09605 1.24134 0.91025 1.01762 0.92209 1.23903 0.99053 0.88685 0.99468 1.68382 1.16480 1.20345 1.07685 1.20289 0.98309 0.93250 0.83879 1.21918 0.94350 0.99332 0.97517 1.21354 0.98608 0.95266 0.95238 1.21957 0.99154 1.01721 0.97347 1.22551 0.89627 0.96712 0.99267 1.67675 1.31468 1.06569 1.13949 1.22755 0.96452 0.95326 0.89188 0.92428 0.92070 0.94004 0.91574 0.91110 0.91066 0.91443 0.75282 0.79962 0.80637 0.80431 0.91784 0.92892 0.85857 0.85954 0.83903 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.97 55.49 0.78 -24.86 16 2 C 0.04 1.12 5.34 -17.43 -0.09 1.02 16 3 Si 0.88 20.65 24.96 -169.99 -4.24 16.40 16 4 H -0.28 -6.47 6.72 56.52 0.38 -6.09 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.27 -6.96 9.92 -15.06 -0.15 -7.11 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 N -0.59 -12.49 2.03 -174.61 -0.35 -12.85 16 10 C 0.15 2.67 5.71 -4.05 -0.02 2.65 16 11 C -0.15 -2.34 5.64 -26.73 -0.15 -2.49 16 12 C 0.12 1.57 5.67 -4.04 -0.02 1.54 16 13 N -0.70 -8.90 5.55 -61.15 -0.34 -9.24 16 14 C 0.57 7.56 7.81 -12.19 -0.10 7.47 16 15 O -0.53 -8.30 16.35 5.35 0.09 -8.21 16 16 C 0.03 0.36 6.75 -82.84 -0.56 -0.20 16 17 C 0.11 1.10 10.77 -16.99 -0.18 0.92 16 18 N -0.44 -4.14 10.49 -12.71 -0.13 -4.27 16 19 C 0.07 0.46 11.23 -17.24 -0.19 0.27 16 20 C 0.05 0.36 11.22 -17.39 -0.20 0.17 16 21 N -0.41 -4.21 9.71 -9.61 -0.09 -4.30 16 22 C 0.17 3.30 4.67 -5.20 -0.02 3.28 16 23 C -0.13 -2.30 5.41 -104.48 -0.57 -2.87 16 24 C -0.08 -1.18 7.87 -39.28 -0.31 -1.49 16 25 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 26 C 0.08 1.16 11.18 -17.55 -0.20 0.96 16 27 N -0.49 -9.14 10.36 -13.25 -0.14 -9.27 16 28 C 0.12 2.39 10.86 -17.55 -0.19 2.20 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 32 H 0.07 1.00 5.77 -51.93 -0.30 0.70 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.41 4.94 7.82 -40.82 -0.32 4.62 16 37 H 0.18 1.69 7.65 -52.49 -0.40 1.29 16 38 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.06 1.39 3.34 -51.93 -0.17 1.21 16 41 H 0.05 0.91 7.82 -51.93 -0.41 0.50 16 42 H 0.12 1.62 7.94 -52.49 -0.42 1.20 16 43 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.16 3.34 8.06 -52.48 -0.42 2.92 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -31.93 381.87 -7.84 -39.77 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.81 Total: 7.68 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -3.35 Total: 3.41 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -0.28 Total: -64.80 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.24 Total: 16.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.93 -7.84 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230656054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.779 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds