Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99688 * 2 1 4 4 H 1.48502 * 109.46801 * 239.99660 * 3 2 1 5 5 H 1.48502 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47167 * 119.99905 * 3 2 1 7 7 C 1.38812 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00049 * 160.18669 * 7 2 1 9 9 N 1.36937 * 119.99920 * 340.18262 * 7 2 1 10 10 C 1.46501 * 119.99849 * 139.90527 * 9 7 2 11 11 C 1.52998 * 109.47034 * 90.00060 * 10 9 7 12 12 C 1.53007 * 109.46872 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99651 * 179.97438 * 13 12 11 15 15 O 1.21555 * 120.00087 * 359.97438 * 14 13 12 16 16 C 1.47829 * 119.99821 * 180.02562 * 14 13 12 17 17 C 1.39954 * 120.93777 * 359.71790 * 16 14 13 18 18 N 1.32154 * 118.92122 * 179.69695 * 17 16 14 19 19 C 1.31868 * 120.96452 * 0.61651 * 18 17 16 20 20 N 1.31867 * 122.09801 * 359.65633 * 19 18 17 21 21 C 1.32146 * 120.96708 * 0.02562 * 20 19 18 22 22 C 1.46502 * 120.00150 * 319.90537 * 9 7 2 23 23 C 1.50703 * 109.46984 * 268.03082 * 22 9 7 24 24 C 1.38681 * 120.41463 * 263.14553 * 23 22 9 25 25 C 1.38620 * 118.41547 * 179.78534 * 24 23 22 26 26 C 1.38233 * 119.16492 * 0.51108 * 25 24 23 27 27 N 1.31847 * 120.76247 * 359.72882 * 26 25 24 28 28 C 1.31891 * 121.72390 * 359.97438 * 27 26 25 29 29 H 0.96999 * 120.00052 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46875 * 329.99670 * 10 9 7 31 31 H 1.09005 * 109.46851 * 210.00148 * 10 9 7 32 32 H 1.08997 * 109.47120 * 299.99561 * 11 10 9 33 33 H 1.08992 * 109.47256 * 60.00446 * 11 10 9 34 34 H 1.09005 * 109.46901 * 300.00019 * 12 11 10 35 35 H 1.08995 * 109.46988 * 59.99640 * 12 11 10 36 36 H 0.96996 * 119.99654 * 0.02562 * 13 12 11 37 37 H 1.07998 * 120.54013 * 359.97438 * 17 16 14 38 38 H 1.08008 * 118.95161 * 179.67922 * 19 18 17 39 39 H 1.08002 * 120.53348 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47170 * 28.02813 * 22 9 7 41 41 H 1.08997 * 109.47108 * 148.02846 * 22 9 7 42 42 H 1.08001 * 120.78834 * 0.02562 * 24 23 22 43 43 H 1.08005 * 120.41813 * 180.22284 * 25 24 23 44 44 H 1.07999 * 119.61788 * 179.75435 * 26 25 24 45 45 H 1.08001 * 119.61399 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0423 -1.2299 -0.3164 9 7 1.3865 -2.3527 0.4031 10 6 1.6285 -3.6068 -0.3145 11 6 2.8175 -4.3341 0.3164 12 6 3.0707 -5.6435 -0.4335 13 7 4.2096 -6.3397 0.1703 14 6 4.6172 -7.5236 -0.3286 15 8 4.0395 -8.0138 -1.2791 16 6 5.7660 -8.2263 0.2810 17 6 6.4483 -7.6775 1.3728 18 7 7.4661 -8.3428 1.8904 19 6 7.8476 -9.4997 1.3855 20 7 7.2368 -10.0498 0.3544 21 6 6.2059 -9.4563 -0.2211 22 6 0.4770 -2.3297 1.5514 23 6 1.2445 -2.6559 2.8067 24 6 1.2523 -3.9485 3.3090 25 6 1.9756 -4.2032 4.4637 26 6 2.6516 -3.1655 5.0778 27 7 2.6179 -1.9474 4.5744 28 6 1.9450 -1.6698 3.4746 29 1 -0.4850 0.8400 -0.0004 30 1 1.8480 -3.3905 -1.3600 31 1 0.7419 -4.2379 -0.2525 32 1 3.7041 -3.7031 0.2543 33 1 2.5980 -4.5504 1.3619 34 1 2.1842 -6.2748 -0.3718 35 1 3.2904 -5.4269 -1.4789 36 1 4.6698 -5.9490 0.9294 37 1 6.1450 -6.7280 1.7884 38 1 8.6870 -10.0132 1.8309 39 1 5.7110 -9.9130 -1.0655 40 1 0.0337 -1.3382 1.6440 41 1 -0.3114 -3.0681 1.4054 42 1 0.7108 -4.7387 2.8101 43 1 2.0069 -5.1989 4.8810 44 1 3.2143 -3.3549 5.9800 45 1 1.9410 -0.6598 3.0919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230741172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 67.105474 kcal Electronic energy + Delta-G solvation = -28651.971037 eV Core-core repulsion = 24670.261355 eV Total energy + Delta-G solvation = -3981.709682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56018 -39.62247 -39.48136 -36.55912 -35.22195 -34.20422 -32.98669 -32.28957 -31.89994 -31.21802 -29.73095 -26.37611 -25.88817 -25.12995 -24.65090 -22.94367 -22.67075 -21.35527 -21.12183 -20.28311 -18.44985 -18.03593 -17.48334 -16.97925 -16.53072 -15.90218 -15.82354 -15.66720 -15.10425 -15.05439 -14.55582 -14.43504 -14.20675 -14.08773 -13.92670 -13.52301 -13.41446 -13.10223 -12.86325 -12.57105 -12.17645 -12.04257 -11.89545 -11.38628 -11.34858 -11.24407 -11.12013 -10.84163 -10.72664 -10.29776 -10.24089 -10.18370 -10.17088 -10.02675 -9.75661 -9.25749 -9.16328 -8.94767 -8.63721 -8.33702 -6.76461 -5.99322 -3.59334 0.01135 0.57232 1.67469 1.80536 2.55421 2.86473 3.27848 3.34699 3.37559 3.41231 3.59039 3.70080 3.99914 4.27714 4.31260 4.40205 4.53589 4.85403 4.96755 5.08831 5.16809 5.23460 5.26628 5.32387 5.46126 5.57434 5.64880 5.71891 5.76527 5.80404 5.97394 6.00002 6.07269 6.29363 6.31320 6.37299 6.39946 6.51182 6.62580 6.65871 6.87869 6.97690 7.22998 7.25567 7.41514 7.52608 7.66366 7.90354 8.34140 8.52480 8.98565 9.58526 10.18026 11.01838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.002809 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.849969 B = 9965.418099 C =11016.271329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.021 3.979 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.060 0.940 9 N -0.570 5.570 10 C 0.153 3.847 11 C -0.155 4.155 12 C 0.120 3.880 13 N -0.717 5.717 14 C 0.564 3.436 15 O -0.532 6.532 16 C -0.239 4.239 17 C 0.184 3.816 18 N -0.521 5.521 19 C 0.311 3.689 20 N -0.522 5.522 21 C 0.207 3.793 22 C 0.180 3.820 23 C -0.119 4.119 24 C -0.085 4.085 25 C -0.182 4.182 26 C 0.069 3.931 27 N -0.491 5.491 28 C 0.113 3.887 29 H 0.259 0.741 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.172 0.828 38 H 0.202 0.798 39 H 0.182 0.818 40 H 0.102 0.898 41 H 0.038 0.962 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -14.784 5.009 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.181 4.181 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.077 0.923 9 N -0.288 5.288 10 C 0.026 3.974 11 C -0.196 4.196 12 C -0.003 4.003 13 N -0.367 5.367 14 C 0.349 3.651 15 O -0.409 6.409 16 C -0.246 4.246 17 C 0.016 3.984 18 N -0.234 5.234 19 C 0.025 3.975 20 N -0.236 5.236 21 C 0.040 3.960 22 C 0.053 3.947 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.089 4.089 27 N -0.200 5.200 28 C -0.044 4.044 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.189 0.811 38 H 0.219 0.781 39 H 0.199 0.801 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.989 -14.750 5.092 18.008 hybrid contribution -0.312 0.763 -0.249 0.861 sum 8.677 -13.987 4.843 17.158 Atomic orbital electron populations 1.69983 1.05625 1.26373 1.50120 1.25253 0.95008 0.98879 0.98977 0.86519 0.79406 0.83142 0.78686 1.20514 1.21412 1.20387 1.18925 0.93632 0.85252 1.41839 0.92271 1.43625 1.52987 1.04168 1.28056 1.20754 0.93448 0.87817 0.95392 1.22600 1.02645 0.94031 1.00295 1.21545 0.87306 0.93577 0.97852 1.46049 1.34409 1.21081 1.35198 1.17769 0.82846 0.81193 0.83314 1.90807 1.56467 1.66330 1.27306 1.21905 1.01245 1.00066 1.01428 1.23535 0.87989 0.97837 0.88992 1.68495 1.14663 1.09268 1.30951 1.25302 0.96160 0.88112 0.87944 1.68589 1.08953 1.35276 1.10735 1.23545 0.88557 0.88740 0.95117 1.19958 0.90010 1.03067 0.81623 1.22285 0.98776 0.93221 0.98086 1.21439 0.97776 0.96772 0.95225 1.21961 1.00414 1.00058 0.97752 1.22484 0.98325 0.88709 0.99369 1.67650 1.18009 1.21892 1.12435 1.22703 0.91845 1.00192 0.89666 0.93110 0.92676 0.94426 0.91636 0.91740 0.91371 0.91171 0.76627 0.81086 0.78131 0.80072 0.88011 0.94402 0.86031 0.86177 0.84129 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.08 11.59 55.49 0.64 -22.44 16 2 C 0.02 0.52 4.95 -17.43 -0.09 0.43 16 3 Si 0.89 20.03 29.60 -169.99 -5.03 15.00 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.27 -6.49 9.44 -15.06 -0.14 -6.64 16 8 H 0.06 1.47 7.90 -52.49 -0.41 1.05 16 9 N -0.57 -12.26 2.39 -174.61 -0.42 -12.67 16 10 C 0.15 2.74 5.71 -4.04 -0.02 2.72 16 11 C -0.16 -2.27 5.62 -26.73 -0.15 -2.42 16 12 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 13 N -0.72 -7.83 5.51 -61.25 -0.34 -8.17 16 14 C 0.56 6.74 7.79 -12.34 -0.10 6.64 16 15 O -0.53 -8.08 16.45 5.32 0.09 -7.99 16 16 C -0.24 -2.36 5.91 -104.69 -0.62 -2.98 16 17 C 0.18 1.60 10.81 -16.77 -0.18 1.42 16 18 N -0.52 -4.83 10.42 -14.24 -0.15 -4.98 16 19 C 0.31 2.57 12.27 -92.03 -1.13 1.44 16 20 N -0.52 -4.97 10.42 -14.24 -0.15 -5.12 16 21 C 0.21 2.01 10.88 -16.78 -0.18 1.83 16 22 C 0.18 3.69 5.47 -5.19 -0.03 3.66 16 23 C -0.12 -2.15 5.17 -104.48 -0.54 -2.69 16 24 C -0.09 -1.29 8.00 -39.28 -0.31 -1.61 16 25 C -0.18 -2.48 10.11 -39.44 -0.40 -2.88 16 26 C 0.07 1.02 11.18 -17.55 -0.20 0.83 16 27 N -0.49 -8.93 10.36 -13.25 -0.14 -9.06 16 28 C 0.11 2.19 10.89 -17.55 -0.19 2.00 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.04 0.64 7.91 -51.93 -0.41 0.22 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.94 5.85 -51.93 -0.30 0.64 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.52 6.61 -40.82 -0.27 3.25 16 37 H 0.17 1.08 6.54 -52.49 -0.34 0.74 16 38 H 0.20 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.18 1.58 7.75 -52.49 -0.41 1.17 16 40 H 0.10 2.40 5.66 -51.93 -0.29 2.11 16 41 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.15 3.15 8.06 -52.49 -0.42 2.72 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -29.86 385.04 -9.77 -39.63 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.78 Total: 6.75 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -4.30 Total: 3.25 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.55 Total: -62.45 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.86 -9.77 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230741172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.739 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds