Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00428 * 2 1 4 4 H 1.48496 * 109.47272 * 240.00185 * 3 2 1 5 5 H 1.48505 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47415 * 119.99553 * 3 2 1 7 7 C 1.38816 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00433 * 160.18299 * 7 2 1 9 9 N 1.36946 * 119.99801 * 340.18539 * 7 2 1 10 10 C 1.46497 * 119.99884 * 139.90624 * 9 7 2 11 11 C 1.52998 * 109.47582 * 89.99542 * 10 9 7 12 12 C 1.52995 * 109.47161 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47010 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00108 * 180.02562 * 13 12 11 15 15 O 1.21517 * 119.99709 * 359.97438 * 14 13 12 16 16 C 1.48128 * 120.00258 * 180.02562 * 14 13 12 17 17 C 1.40109 * 121.15006 * 180.02562 * 16 14 13 18 18 C 1.38501 * 117.82759 * 179.97438 * 17 16 14 19 19 N 1.31916 * 119.96605 * 359.97438 * 18 17 16 20 20 N 1.28271 * 122.51894 * 0.02562 * 19 18 17 21 21 C 1.31928 * 122.32663 * 0.02562 * 20 19 18 22 22 C 1.46502 * 119.99822 * 319.90288 * 9 7 2 23 23 C 1.50706 * 109.46696 * 268.03154 * 22 9 7 24 24 C 1.38680 * 120.41337 * 263.14541 * 23 22 9 25 25 C 1.38633 * 118.41375 * 179.78865 * 24 23 22 26 26 C 1.38222 * 119.16253 * 0.50929 * 25 24 23 27 27 N 1.31862 * 120.76561 * 359.73085 * 26 25 24 28 28 C 1.31888 * 121.72161 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47119 * 329.99241 * 10 9 7 31 31 H 1.09003 * 109.46633 * 210.00218 * 10 9 7 32 32 H 1.09013 * 109.46550 * 59.99785 * 11 10 9 33 33 H 1.09000 * 109.46962 * 300.00059 * 11 10 9 34 34 H 1.08997 * 109.47003 * 60.00368 * 12 11 10 35 35 H 1.09000 * 109.47518 * 300.00070 * 12 11 10 36 36 H 0.96997 * 119.99561 * 359.97438 * 13 12 11 37 37 H 1.08000 * 121.08429 * 359.95464 * 17 16 14 38 38 H 1.08005 * 120.01490 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.17440 * 180.27898 * 21 20 19 40 40 H 1.08994 * 109.47177 * 28.02757 * 22 9 7 41 41 H 1.08992 * 109.46861 * 148.03482 * 22 9 7 42 42 H 1.07994 * 120.79496 * 0.02662 * 24 23 22 43 43 H 1.08000 * 120.41248 * 180.22202 * 25 24 23 44 44 H 1.08002 * 119.61841 * 179.74751 * 26 25 24 45 45 H 1.07993 * 119.61077 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0423 -1.2301 -0.3165 9 7 1.3863 -2.3528 0.4031 10 6 1.6284 -3.6069 -0.3145 11 6 2.8174 -4.3343 0.3163 12 6 3.0697 -5.6442 -0.4328 13 7 4.2078 -6.3411 0.1717 14 6 4.6152 -7.5250 -0.3270 15 8 4.0382 -8.0147 -1.2777 16 6 5.7656 -8.2299 0.2845 17 6 6.2097 -9.4614 -0.2147 18 6 7.2918 -10.0597 0.4092 19 7 7.8687 -9.4689 1.4379 20 7 7.4672 -8.3416 1.8999 21 6 6.4454 -7.6894 1.3792 22 6 0.4769 -2.3297 1.5514 23 6 1.2445 -2.6560 2.8066 24 6 1.2521 -3.9486 3.3089 25 6 1.9755 -4.2033 4.4638 26 6 2.6515 -3.1657 5.0777 27 7 2.6179 -1.9474 4.5743 28 6 1.9450 -1.6699 3.4745 29 1 -0.4850 0.8401 -0.0004 30 1 1.8479 -3.3906 -1.3601 31 1 0.7417 -4.2379 -0.2525 32 1 2.5977 -4.5505 1.3620 33 1 3.7039 -3.7032 0.2542 34 1 3.2891 -5.4283 -1.4784 35 1 2.1830 -6.2752 -0.3704 36 1 4.6686 -5.9499 0.9304 37 1 5.7238 -9.9289 -1.0584 38 1 7.6632 -11.0095 0.0536 39 1 6.1395 -6.7400 1.7932 40 1 0.0337 -1.3383 1.6439 41 1 -0.3115 -3.0680 1.4054 42 1 0.7106 -4.7387 2.8102 43 1 2.0066 -5.1990 4.8810 44 1 3.2141 -3.3551 5.9800 45 1 1.9410 -0.6600 3.0919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230859987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 77.492696 kcal Electronic energy + Delta-G solvation = -28639.929477 eV Core-core repulsion = 24658.670220 eV Total energy + Delta-G solvation = -3981.259258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56944 -39.69085 -39.55080 -36.59231 -35.24475 -33.72083 -33.13485 -32.29748 -32.03627 -31.23032 -29.80668 -26.61012 -25.91431 -25.13809 -24.70734 -22.94478 -22.68576 -21.39642 -21.21055 -20.32615 -18.48443 -18.04882 -16.99049 -16.78184 -16.54083 -15.96255 -15.87877 -15.70558 -15.48985 -15.19169 -14.97266 -14.44670 -14.29790 -13.99850 -13.85528 -13.54850 -13.41008 -13.11733 -12.86852 -12.57494 -12.20386 -11.93088 -11.47279 -11.37302 -11.26402 -11.14584 -10.87409 -10.76765 -10.71213 -10.66271 -10.57959 -10.30206 -10.22456 -10.05326 -10.00500 -9.30774 -9.19544 -8.94829 -8.64331 -8.33883 -6.77426 -6.00085 -3.60163 -0.09613 0.40602 1.67513 1.80369 2.43067 2.72928 3.23335 3.27525 3.34389 3.37375 3.61133 3.86628 4.07401 4.19893 4.28203 4.39729 4.39998 4.81819 4.97013 5.02798 5.14978 5.20735 5.23511 5.28526 5.33193 5.45992 5.56408 5.62235 5.63944 5.69267 5.75228 5.93764 5.96016 6.06492 6.25747 6.29506 6.36662 6.50764 6.62093 6.63695 6.85899 6.97196 7.15313 7.25060 7.41069 7.65649 7.79569 8.18640 8.33354 8.52568 8.97728 9.57681 10.17050 11.01112 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.002806 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.218554 B = 9976.082983 C =11024.525774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.021 3.979 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.060 0.940 9 N -0.570 5.570 10 C 0.153 3.847 11 C -0.156 4.156 12 C 0.120 3.880 13 N -0.713 5.713 14 C 0.557 3.443 15 O -0.527 6.527 16 C -0.130 4.130 17 C -0.059 4.059 18 C 0.038 3.962 19 N -0.229 5.229 20 N -0.240 5.240 21 C 0.070 3.930 22 C 0.180 3.820 23 C -0.119 4.119 24 C -0.085 4.085 25 C -0.182 4.182 26 C 0.069 3.931 27 N -0.491 5.491 28 C 0.114 3.886 29 H 0.259 0.741 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.401 0.599 37 H 0.164 0.836 38 H 0.181 0.819 39 H 0.176 0.824 40 H 0.102 0.898 41 H 0.038 0.962 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -15.731 2.972 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.181 4.181 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.077 0.923 9 N -0.288 5.288 10 C 0.026 3.974 11 C -0.196 4.196 12 C -0.003 4.003 13 N -0.364 5.364 14 C 0.342 3.658 15 O -0.404 6.404 16 C -0.144 4.144 17 C -0.089 4.089 18 C -0.126 4.126 19 N -0.072 5.072 20 N -0.081 5.081 21 C -0.095 4.095 22 C 0.054 3.946 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.088 4.088 27 N -0.200 5.200 28 C -0.044 4.044 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.182 0.818 38 H 0.198 0.802 39 H 0.193 0.807 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.042 -15.243 3.797 17.647 hybrid contribution -0.808 0.343 -1.068 1.382 sum 7.233 -14.900 2.729 16.786 Atomic orbital electron populations 1.69983 1.05629 1.26384 1.50098 1.25254 0.95010 0.98888 0.98952 0.86517 0.79407 0.83119 0.78699 1.20514 1.21407 1.20367 1.18927 0.93632 0.85245 1.41886 0.92266 1.43626 1.52980 1.04150 1.28070 1.20749 0.93410 0.87846 0.95389 1.22613 1.02732 0.93946 1.00337 1.21577 0.87212 0.93642 0.97897 1.46067 1.34337 1.20842 1.35129 1.17904 0.82995 0.81431 0.83500 1.90806 1.56192 1.66285 1.27081 1.21333 0.98173 0.97085 0.97807 1.22665 0.94458 0.92967 0.98821 1.24433 0.93364 1.01465 0.93368 1.72918 1.22741 1.02819 1.08682 1.73108 1.10295 1.01773 1.22951 1.24603 0.92078 1.00573 0.92214 1.19958 0.90000 1.03072 0.81619 1.22281 0.98798 0.93228 0.98102 1.21437 0.97797 0.96761 0.95242 1.21963 1.00397 1.00074 0.97742 1.22492 0.98287 0.88698 0.99371 1.67658 1.17992 1.21891 1.12425 1.22702 0.91831 1.00188 0.89667 0.93103 0.92676 0.94424 0.91678 0.91559 0.91076 0.91283 0.76392 0.81833 0.80184 0.80744 0.88002 0.94408 0.86049 0.86159 0.84099 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.04 11.59 55.49 0.64 -22.40 16 2 C 0.02 0.52 4.95 -17.43 -0.09 0.43 16 3 Si 0.89 20.02 29.60 -169.99 -5.03 14.98 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.27 -6.49 9.44 -15.05 -0.14 -6.63 16 8 H 0.06 1.46 7.90 -52.49 -0.41 1.05 16 9 N -0.57 -12.21 2.39 -174.61 -0.42 -12.63 16 10 C 0.15 2.73 5.71 -4.04 -0.02 2.70 16 11 C -0.16 -2.26 5.62 -26.73 -0.15 -2.41 16 12 C 0.12 1.50 5.67 -4.04 -0.02 1.47 16 13 N -0.71 -7.66 5.52 -61.16 -0.34 -7.99 16 14 C 0.56 6.49 7.80 -12.20 -0.10 6.39 16 15 O -0.53 -7.80 16.49 5.35 0.09 -7.71 16 16 C -0.13 -1.24 5.92 -104.58 -0.62 -1.86 16 17 C -0.06 -0.48 9.77 -38.78 -0.38 -0.85 16 18 C 0.04 0.28 11.30 -17.42 -0.20 0.09 16 19 N -0.23 -2.44 11.48 30.53 0.35 -2.09 16 20 N -0.24 -2.70 11.49 30.78 0.35 -2.34 16 21 C 0.07 0.65 10.84 -16.95 -0.18 0.46 16 22 C 0.18 3.68 5.47 -5.19 -0.03 3.65 16 23 C -0.12 -2.16 5.17 -104.48 -0.54 -2.70 16 24 C -0.09 -1.30 8.00 -39.27 -0.31 -1.61 16 25 C -0.18 -2.48 10.11 -39.44 -0.40 -2.88 16 26 C 0.07 1.03 11.18 -17.54 -0.20 0.84 16 27 N -0.49 -8.95 10.36 -13.26 -0.14 -9.08 16 28 C 0.11 2.19 10.89 -17.55 -0.19 2.00 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.04 0.63 7.91 -51.93 -0.41 0.22 16 32 H 0.06 0.95 5.85 -51.92 -0.30 0.64 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 3.49 6.63 -40.82 -0.27 3.22 16 37 H 0.16 1.08 7.80 -52.49 -0.41 0.67 16 38 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.18 1.17 6.53 -52.49 -0.34 0.82 16 40 H 0.10 2.40 5.66 -51.93 -0.29 2.11 16 41 H 0.04 0.73 7.83 -51.93 -0.41 0.32 16 42 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.15 3.15 8.06 -52.49 -0.42 2.72 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -30.30 385.27 -8.04 -38.34 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.79 Total: 6.02 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.57 Total: -0.90 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.46 Total: -56.53 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.30 -8.04 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230859987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.835 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds