Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00428 * 2 1 4 4 H 1.48496 * 109.47272 * 240.00185 * 3 2 1 5 5 H 1.48505 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47415 * 119.99553 * 3 2 1 7 7 C 1.38816 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00433 * 160.18299 * 7 2 1 9 9 N 1.36946 * 119.99801 * 340.18539 * 7 2 1 10 10 C 1.46497 * 119.99884 * 139.90624 * 9 7 2 11 11 C 1.52998 * 109.47582 * 89.99542 * 10 9 7 12 12 C 1.52995 * 109.47161 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47010 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00108 * 180.02562 * 13 12 11 15 15 O 1.21517 * 119.99709 * 359.97438 * 14 13 12 16 16 C 1.48128 * 120.00258 * 180.02562 * 14 13 12 17 17 C 1.40109 * 121.15006 * 180.02562 * 16 14 13 18 18 C 1.38501 * 117.82759 * 179.97438 * 17 16 14 19 19 N 1.31916 * 119.96605 * 359.97438 * 18 17 16 20 20 N 1.28271 * 122.51894 * 0.02562 * 19 18 17 21 21 C 1.31928 * 122.32663 * 0.02562 * 20 19 18 22 22 C 1.46502 * 119.99822 * 319.90288 * 9 7 2 23 23 C 1.50706 * 109.46696 * 268.03154 * 22 9 7 24 24 C 1.38680 * 120.41337 * 263.14541 * 23 22 9 25 25 C 1.38633 * 118.41375 * 179.78865 * 24 23 22 26 26 C 1.38222 * 119.16253 * 0.50929 * 25 24 23 27 27 N 1.31862 * 120.76561 * 359.73085 * 26 25 24 28 28 C 1.31888 * 121.72161 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47119 * 329.99241 * 10 9 7 31 31 H 1.09003 * 109.46633 * 210.00218 * 10 9 7 32 32 H 1.09013 * 109.46550 * 59.99785 * 11 10 9 33 33 H 1.09000 * 109.46962 * 300.00059 * 11 10 9 34 34 H 1.08997 * 109.47003 * 60.00368 * 12 11 10 35 35 H 1.09000 * 109.47518 * 300.00070 * 12 11 10 36 36 H 0.96997 * 119.99561 * 359.97438 * 13 12 11 37 37 H 1.08000 * 121.08429 * 359.95464 * 17 16 14 38 38 H 1.08005 * 120.01490 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.17440 * 180.27898 * 21 20 19 40 40 H 1.08994 * 109.47177 * 28.02757 * 22 9 7 41 41 H 1.08992 * 109.46861 * 148.03482 * 22 9 7 42 42 H 1.07994 * 120.79496 * 0.02662 * 24 23 22 43 43 H 1.08000 * 120.41248 * 180.22202 * 25 24 23 44 44 H 1.08002 * 119.61841 * 179.74751 * 26 25 24 45 45 H 1.07993 * 119.61077 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0423 -1.2301 -0.3165 9 7 1.3863 -2.3528 0.4031 10 6 1.6284 -3.6069 -0.3145 11 6 2.8174 -4.3343 0.3163 12 6 3.0697 -5.6442 -0.4328 13 7 4.2078 -6.3411 0.1717 14 6 4.6152 -7.5250 -0.3270 15 8 4.0382 -8.0147 -1.2777 16 6 5.7656 -8.2299 0.2845 17 6 6.2097 -9.4614 -0.2147 18 6 7.2918 -10.0597 0.4092 19 7 7.8687 -9.4689 1.4379 20 7 7.4672 -8.3416 1.8999 21 6 6.4454 -7.6894 1.3792 22 6 0.4769 -2.3297 1.5514 23 6 1.2445 -2.6560 2.8066 24 6 1.2521 -3.9486 3.3089 25 6 1.9755 -4.2033 4.4638 26 6 2.6515 -3.1657 5.0777 27 7 2.6179 -1.9474 4.5743 28 6 1.9450 -1.6699 3.4745 29 1 -0.4850 0.8401 -0.0004 30 1 1.8479 -3.3906 -1.3601 31 1 0.7417 -4.2379 -0.2525 32 1 2.5977 -4.5505 1.3620 33 1 3.7039 -3.7032 0.2542 34 1 3.2891 -5.4283 -1.4784 35 1 2.1830 -6.2752 -0.3704 36 1 4.6686 -5.9499 0.9304 37 1 5.7238 -9.9289 -1.0584 38 1 7.6632 -11.0095 0.0536 39 1 6.1395 -6.7400 1.7932 40 1 0.0337 -1.3383 1.6439 41 1 -0.3115 -3.0680 1.4054 42 1 0.7106 -4.7387 2.8102 43 1 2.0066 -5.1990 4.8810 44 1 3.2141 -3.3551 5.9800 45 1 1.9410 -0.6600 3.0919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230859987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 58.151561 kcal Electronic energy + Delta-G solvation = -28640.768172 eV Core-core repulsion = 24658.670220 eV Total energy + Delta-G solvation = -3982.097952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28455 -40.91204 -40.55755 -38.04058 -36.42736 -34.53235 -33.99053 -33.77149 -33.27541 -32.53881 -31.19462 -27.69099 -27.55051 -26.08532 -25.56007 -24.25409 -24.00418 -22.59828 -22.25973 -21.74605 -19.32222 -18.80556 -18.66255 -17.79619 -17.42540 -17.23069 -16.90825 -16.79638 -16.66200 -16.19207 -16.09654 -15.80926 -15.57209 -15.23856 -14.90833 -14.63940 -14.50931 -14.44199 -14.25569 -13.79756 -13.52090 -13.42871 -12.91186 -12.87883 -12.59362 -12.47333 -12.37054 -12.08714 -11.99123 -11.83853 -11.67735 -11.55551 -11.38206 -11.25663 -10.79322 -10.56440 -10.47448 -10.23480 -10.20744 -9.68643 -8.55644 -7.86490 -5.49770 -0.80957 -0.20897 0.40355 0.54152 1.44621 1.49302 1.53469 1.59183 1.84937 2.48663 2.52873 2.99982 3.02961 3.17209 3.25488 3.46145 3.47364 3.71930 3.73480 3.78865 4.11024 4.13808 4.19696 4.27285 4.32350 4.33158 4.40801 4.49343 4.56010 4.67281 4.71550 4.74351 4.81898 4.96129 5.05138 5.06604 5.07817 5.25744 5.31001 5.35938 5.49752 5.54608 5.70196 5.71901 6.02194 6.28722 6.47564 6.92192 7.16088 7.22749 7.51486 7.82046 8.35660 9.09883 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.002806 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.218554 B = 9976.082983 C =11024.525774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.020 4.020 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.263 4.263 8 H 0.051 0.949 9 N -0.585 5.585 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.131 3.869 13 N -0.705 5.705 14 C 0.563 3.437 15 O -0.562 6.562 16 C -0.140 4.140 17 C -0.052 4.052 18 C 0.049 3.951 19 N -0.257 5.257 20 N -0.270 5.270 21 C 0.075 3.925 22 C 0.188 3.812 23 C -0.129 4.129 24 C -0.078 4.078 25 C -0.162 4.162 26 C 0.069 3.931 27 N -0.515 5.515 28 C 0.090 3.910 29 H 0.253 0.747 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.179 0.821 38 H 0.220 0.780 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.177 0.823 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -18.856 4.228 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.068 0.932 9 N -0.304 5.304 10 C 0.024 3.976 11 C -0.172 4.172 12 C 0.007 3.993 13 N -0.356 5.356 14 C 0.348 3.652 15 O -0.441 6.441 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.116 4.116 19 N -0.098 5.098 20 N -0.110 5.110 21 C -0.091 4.091 22 C 0.061 3.939 23 C -0.134 4.134 24 C -0.105 4.105 25 C -0.181 4.181 26 C -0.089 4.089 27 N -0.224 5.224 28 C -0.066 4.066 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.197 0.803 38 H 0.236 0.764 39 H 0.212 0.788 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.163 0.837 43 H 0.183 0.817 44 H 0.194 0.806 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.200 -18.367 5.085 21.162 hybrid contribution -1.129 1.158 -1.394 2.135 sum 8.071 -17.209 3.691 19.363 Atomic orbital electron populations 1.70078 1.06546 1.26257 1.52318 1.25723 0.95475 1.00952 0.99751 0.85769 0.78267 0.80653 0.78353 1.20226 1.21908 1.20710 1.19020 0.93272 0.86492 1.40586 0.93175 1.43766 1.52882 1.04552 1.29222 1.20836 0.95306 0.86920 0.94560 1.22245 1.00366 0.94180 1.00457 1.21309 0.88096 0.92734 0.97128 1.45902 1.33810 1.20609 1.35280 1.18099 0.83007 0.81195 0.82867 1.90793 1.57465 1.67167 1.28652 1.21200 0.97941 0.97865 0.98467 1.22954 0.94180 0.92273 0.98754 1.24985 0.92417 1.02259 0.91916 1.72830 1.23810 1.03134 1.10074 1.73052 1.11320 1.02553 1.24118 1.24839 0.91367 1.01028 0.91830 1.19703 0.90235 1.01291 0.82669 1.21918 0.99152 0.94651 0.97638 1.21675 0.97564 0.95610 0.95663 1.22377 0.97916 1.01654 0.96173 1.23172 0.97841 0.87788 1.00056 1.67613 1.18515 1.24103 1.12189 1.22313 0.93872 0.99357 0.91107 0.93752 0.94185 0.93086 0.91032 0.93060 0.91973 0.90804 0.75036 0.80342 0.76402 0.78787 0.91696 0.93595 0.83717 0.81665 0.80644 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.70 11.59 21.65 0.25 -49.45 16 2 C -0.02 -1.05 4.95 84.86 0.42 -0.63 16 3 Si 0.94 42.75 29.60 68.60 2.03 44.79 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.26 -13.19 9.44 84.03 0.79 -12.40 16 8 H 0.05 2.56 7.90 -2.91 -0.02 2.54 16 9 N -0.58 -25.53 2.39 -706.34 -1.69 -27.21 16 10 C 0.15 5.29 5.71 86.38 0.49 5.79 16 11 C -0.13 -3.65 5.62 30.59 0.17 -3.48 16 12 C 0.13 3.05 5.67 86.38 0.49 3.54 16 13 N -0.70 -13.57 5.52 -465.70 -2.57 -16.14 16 14 C 0.56 11.97 7.80 86.87 0.68 12.65 16 15 O -0.56 -15.74 16.49 -3.77 -0.06 -15.81 16 16 C -0.14 -2.38 5.92 -19.84 -0.12 -2.50 16 17 C -0.05 -0.69 9.77 22.79 0.22 -0.47 16 18 C 0.05 0.59 11.30 84.74 0.96 1.55 16 19 N -0.26 -4.97 11.48 -57.33 -0.66 -5.63 16 20 N -0.27 -5.61 11.49 -56.53 -0.65 -6.26 16 21 C 0.07 1.22 10.84 85.04 0.92 2.14 16 22 C 0.19 7.82 5.47 85.63 0.47 8.29 16 23 C -0.13 -4.62 5.17 -19.77 -0.10 -4.73 16 24 C -0.08 -2.13 8.00 22.47 0.18 -1.95 16 25 C -0.16 -3.65 10.11 22.36 0.23 -3.42 16 26 C 0.07 1.83 11.18 84.68 0.95 2.78 16 27 N -0.51 -18.29 10.36 -195.85 -2.03 -20.32 16 28 C 0.09 3.54 10.89 84.67 0.92 4.46 16 29 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.04 1.51 8.04 -2.38 -0.02 1.49 16 31 H 0.05 1.65 7.91 -2.39 -0.02 1.63 16 32 H 0.07 1.89 5.85 -2.38 -0.01 1.88 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 6.07 6.63 -92.71 -0.61 5.46 16 37 H 0.18 1.85 7.80 -2.91 -0.02 1.83 16 38 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.20 2.10 6.53 -2.91 -0.02 2.08 16 40 H 0.07 3.23 5.66 -2.39 -0.01 3.21 16 41 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 45 H 0.12 5.33 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -69.02 385.27 2.71 -66.31 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.41 Total: 18.10 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 7.67 Total: 11.61 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -7.34 Total: -125.01 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.06 Total: -15.81 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.02 2.71 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230859987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.463 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds