Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48501 * 109.46778 * 269.99508 * 3 2 1 5 5 H 1.48498 * 109.47479 * 29.99463 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00007 * 3 2 1 7 7 C 1.38811 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99629 * 158.39224 * 7 2 1 9 9 N 1.36938 * 120.00387 * 338.39538 * 7 2 1 10 10 C 1.46497 * 120.00133 * 143.98896 * 9 7 2 11 11 C 1.53000 * 109.46841 * 270.00019 * 10 9 7 12 12 C 1.53002 * 109.46883 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99811 * 179.97438 * 13 12 11 15 15 O 1.21457 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.48546 * 119.99352 * 179.97438 * 14 13 12 17 17 N 1.32462 * 119.18830 * 359.73653 * 16 14 13 18 18 C 1.32111 * 120.76523 * 179.71769 * 17 16 14 19 19 C 1.38803 * 119.16474 * 0.54186 * 18 17 16 20 20 C 1.38801 * 118.50442 * 359.72811 * 19 18 17 21 21 N 1.32112 * 119.16702 * 0.02562 * 20 19 18 22 22 C 1.46499 * 119.99730 * 323.98542 * 9 7 2 23 23 C 1.50698 * 109.47340 * 263.95974 * 22 9 7 24 24 C 1.38674 * 120.41536 * 264.92448 * 23 22 9 25 25 C 1.38626 * 118.41699 * 180.24335 * 24 23 22 26 26 C 1.38228 * 119.16505 * 359.74917 * 25 24 23 27 27 N 1.31850 * 120.76199 * 0.02562 * 26 25 24 28 28 C 1.31888 * 121.72745 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46879 * 29.99884 * 10 9 7 31 31 H 1.08996 * 109.47392 * 149.99973 * 10 9 7 32 32 H 1.08994 * 109.47399 * 299.99611 * 11 10 9 33 33 H 1.09000 * 109.47033 * 60.00301 * 11 10 9 34 34 H 1.09004 * 109.47303 * 300.00180 * 12 11 10 35 35 H 1.08996 * 109.47369 * 59.99942 * 12 11 10 36 36 H 0.97001 * 119.99787 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.41554 * 180.27131 * 18 17 16 38 38 H 1.07994 * 120.74702 * 179.75559 * 19 18 17 39 39 H 1.08002 * 120.41539 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.46958 * 143.95459 * 22 9 7 41 41 H 1.09008 * 109.46970 * 23.95747 * 22 9 7 42 42 H 1.08002 * 120.78993 * 359.96923 * 24 23 22 43 43 H 1.08005 * 120.41676 * 179.72448 * 25 24 23 44 44 H 1.08001 * 119.62136 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.62133 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0333 -1.2352 -0.3439 9 7 1.3977 -2.3463 0.4377 10 6 1.6897 -3.6271 -0.2106 11 6 0.7106 -3.8492 -1.3651 12 6 1.0160 -5.1866 -2.0427 13 7 0.0781 -5.3996 -3.1478 14 6 0.1584 -6.5195 -3.8933 15 8 1.0079 -7.3524 -3.6487 16 6 -0.7930 -6.7357 -5.0134 17 7 -1.7172 -5.8198 -5.2620 18 6 -2.5755 -5.9776 -6.2538 19 6 -2.5069 -7.1253 -7.0315 20 6 -1.5294 -8.0662 -6.7390 21 7 -0.6999 -7.8423 -5.7354 22 6 0.4504 -2.2893 1.5538 23 6 1.1628 -2.6366 2.8355 24 6 1.1409 -3.9353 3.3213 25 6 1.8058 -4.2074 4.5069 26 6 2.4682 -3.1838 5.1580 27 7 2.4717 -1.9613 4.6642 28 6 1.8500 -1.6659 3.5391 29 1 -0.4850 0.8401 -0.0004 30 1 2.7093 -3.6151 -0.5961 31 1 1.5850 -4.4338 0.5148 32 1 -0.3089 -3.8612 -0.9798 33 1 0.8153 -3.0425 -2.0907 34 1 2.0355 -5.1742 -2.4281 35 1 0.9116 -5.9935 -1.3174 36 1 -0.6002 -4.7343 -3.3433 37 1 -3.3239 -5.2253 -6.4541 38 1 -3.1983 -7.2823 -7.8461 39 1 -1.4479 -8.9701 -7.3244 40 1 -0.3565 -3.0016 1.3821 41 1 0.0373 -1.2834 1.6287 42 1 0.6145 -4.7151 2.7910 43 1 1.8059 -5.2067 4.9168 44 1 2.9890 -3.3877 6.0820 45 1 1.8746 -0.6529 3.1658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230876372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = 73.284795 kcal Electronic energy + Delta-G solvation = -27992.839768 eV Core-core repulsion = 24011.398042 eV Total energy + Delta-G solvation = -3981.441726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47928 -39.49147 -39.21749 -36.44902 -35.06642 -34.09371 -32.74775 -32.20720 -31.90316 -31.14024 -29.63870 -26.43475 -25.86186 -24.98511 -24.62844 -22.86985 -22.54698 -21.40044 -21.04054 -20.08517 -18.40533 -17.88705 -16.97839 -16.41008 -16.35760 -15.88798 -15.77644 -15.58355 -15.26844 -14.92760 -14.81459 -14.33833 -14.08049 -13.96356 -13.87547 -13.49281 -13.29552 -12.90808 -12.85759 -12.49579 -11.99157 -11.73282 -11.60745 -11.29857 -11.29306 -11.19366 -11.01315 -10.73501 -10.57168 -10.26779 -10.11942 -10.09958 -10.03738 -9.87845 -9.67337 -9.21988 -8.96014 -8.91473 -8.58590 -8.29229 -6.77498 -5.95817 -3.47705 0.13297 0.68467 1.74633 1.88465 2.53532 2.73483 3.30045 3.39231 3.43895 3.60544 3.63491 4.09712 4.15148 4.34809 4.46670 4.52819 4.62370 4.90074 5.03155 5.19283 5.24709 5.29842 5.32715 5.51914 5.54161 5.67834 5.76514 5.79401 5.84769 5.93087 6.10118 6.12735 6.18337 6.39811 6.42824 6.51512 6.55797 6.59121 6.72197 6.83198 7.02065 7.05283 7.32512 7.35662 7.49254 7.69855 7.71020 8.14592 8.36126 8.58517 9.02654 9.64677 10.21995 11.06533 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.002435 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.571863 B =11496.513531 C =13193.673696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.572 5.572 10 C 0.153 3.847 11 C -0.145 4.145 12 C 0.119 3.881 13 N -0.700 5.700 14 C 0.577 3.423 15 O -0.511 6.511 16 C 0.287 3.713 17 N -0.492 5.492 18 C 0.147 3.853 19 C -0.213 4.213 20 C 0.144 3.856 21 N -0.470 5.470 22 C 0.181 3.819 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.180 4.180 26 C 0.069 3.931 27 N -0.493 5.493 28 C 0.113 3.887 29 H 0.257 0.743 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.142 0.858 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -12.237 -8.413 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.186 4.186 3 Si 0.721 3.279 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.080 0.920 9 N -0.290 5.290 10 C 0.026 3.974 11 C -0.186 4.186 12 C -0.005 4.005 13 N -0.352 5.352 14 C 0.358 3.642 15 O -0.383 6.383 16 C 0.017 3.983 17 N -0.209 5.209 18 C -0.019 4.019 19 C -0.235 4.235 20 C -0.022 4.022 21 N -0.185 5.185 22 C 0.054 3.946 23 C -0.127 4.127 24 C -0.112 4.112 25 C -0.200 4.200 26 C -0.089 4.089 27 N -0.201 5.201 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.249 0.751 37 H 0.194 0.806 38 H 0.172 0.828 39 H 0.193 0.807 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.576 -11.874 -7.005 14.871 hybrid contribution -1.121 0.281 -1.498 1.892 sum -6.696 -11.593 -8.503 15.860 Atomic orbital electron populations 1.69990 1.05502 1.26080 1.50800 1.25124 0.95002 0.98718 0.99710 0.86472 0.79834 0.83602 0.78025 1.21153 1.21280 1.20051 1.19061 0.94383 0.85591 1.39912 0.91980 1.43735 1.51119 1.03157 1.30998 1.20799 0.96150 0.88563 0.91880 1.22452 1.01909 0.94023 1.00193 1.21634 0.92478 0.99103 0.87238 1.45981 1.36051 1.20918 1.32246 1.17286 0.83073 0.82851 0.80995 1.90799 1.35033 1.43912 1.68586 1.23064 0.92935 0.86943 0.95345 1.68363 1.04057 1.30426 1.18060 1.23359 0.94543 0.95726 0.88320 1.23198 1.01164 0.96580 1.02517 1.23412 0.88598 0.98524 0.91715 1.68277 1.24902 1.20135 1.05177 1.19942 0.89756 1.03550 0.81360 1.22296 0.98593 0.93368 0.98472 1.21487 0.97878 0.96645 0.95180 1.21981 1.00603 1.00165 0.97297 1.22486 0.98123 0.88792 0.99471 1.67634 1.18022 1.21341 1.13134 1.22683 0.92119 1.00190 0.89435 0.93303 0.93431 0.94448 0.91943 0.90705 0.91370 0.91634 0.75107 0.80588 0.82823 0.80712 0.94629 0.87473 0.85922 0.86038 0.84057 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.02 11.46 55.49 0.64 -22.39 16 2 C 0.02 0.39 4.90 -17.43 -0.09 0.30 16 3 Si 0.89 20.34 29.61 -169.99 -5.03 15.31 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.48 9.47 -15.06 -0.14 -6.62 16 8 H 0.06 1.59 7.92 -52.48 -0.42 1.17 16 9 N -0.57 -12.71 2.42 -174.61 -0.42 -13.14 16 10 C 0.15 2.88 5.68 -4.04 -0.02 2.86 16 11 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 12 C 0.12 1.79 5.67 -4.04 -0.02 1.76 16 13 N -0.70 -10.15 5.54 -61.02 -0.34 -10.49 16 14 C 0.58 9.15 7.85 -12.01 -0.09 9.06 16 15 O -0.51 -9.63 16.86 5.40 0.09 -9.54 16 16 C 0.29 3.95 7.60 -157.07 -1.19 2.76 16 17 N -0.49 -5.68 9.58 -11.12 -0.11 -5.79 16 18 C 0.15 1.12 11.30 -17.22 -0.19 0.92 16 19 C -0.21 -1.24 10.18 -39.16 -0.40 -1.64 16 20 C 0.14 1.16 11.30 -17.22 -0.19 0.96 16 21 N -0.47 -6.08 10.13 -11.12 -0.11 -6.19 16 22 C 0.18 3.83 5.38 -5.20 -0.03 3.80 16 23 C -0.12 -2.37 5.47 -104.48 -0.57 -2.95 16 24 C -0.08 -1.42 9.77 -39.28 -0.38 -1.80 16 25 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 26 C 0.07 1.11 11.18 -17.55 -0.20 0.91 16 27 N -0.49 -9.48 10.36 -13.25 -0.14 -9.61 16 28 C 0.11 2.30 10.88 -17.55 -0.19 2.10 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 31 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.41 5.56 7.78 -40.82 -0.32 5.24 16 37 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 41 H 0.11 2.58 5.48 -51.92 -0.28 2.30 16 42 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.15 3.21 8.06 -52.49 -0.42 2.79 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -31.75 392.24 -9.84 -41.58 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.05 Total: 7.64 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -4.27 Total: 6.70 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -0.48 Total: -67.60 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.75 -9.84 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230876372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.867 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds