Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48501 * 109.46778 * 269.99508 * 3 2 1 5 5 H 1.48498 * 109.47479 * 29.99463 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00007 * 3 2 1 7 7 C 1.38811 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99629 * 158.39224 * 7 2 1 9 9 N 1.36938 * 120.00387 * 338.39538 * 7 2 1 10 10 C 1.46497 * 120.00133 * 143.98896 * 9 7 2 11 11 C 1.53000 * 109.46841 * 270.00019 * 10 9 7 12 12 C 1.53002 * 109.46883 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47229 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99811 * 179.97438 * 13 12 11 15 15 O 1.21457 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.48546 * 119.99352 * 179.97438 * 14 13 12 17 17 N 1.32462 * 119.18830 * 359.73653 * 16 14 13 18 18 C 1.32111 * 120.76523 * 179.71769 * 17 16 14 19 19 C 1.38803 * 119.16474 * 0.54186 * 18 17 16 20 20 C 1.38801 * 118.50442 * 359.72811 * 19 18 17 21 21 N 1.32112 * 119.16702 * 0.02562 * 20 19 18 22 22 C 1.46499 * 119.99730 * 323.98542 * 9 7 2 23 23 C 1.50698 * 109.47340 * 263.95974 * 22 9 7 24 24 C 1.38674 * 120.41536 * 264.92448 * 23 22 9 25 25 C 1.38626 * 118.41699 * 180.24335 * 24 23 22 26 26 C 1.38228 * 119.16505 * 359.74917 * 25 24 23 27 27 N 1.31850 * 120.76199 * 0.02562 * 26 25 24 28 28 C 1.31888 * 121.72745 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99814 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46879 * 29.99884 * 10 9 7 31 31 H 1.08996 * 109.47392 * 149.99973 * 10 9 7 32 32 H 1.08994 * 109.47399 * 299.99611 * 11 10 9 33 33 H 1.09000 * 109.47033 * 60.00301 * 11 10 9 34 34 H 1.09004 * 109.47303 * 300.00180 * 12 11 10 35 35 H 1.08996 * 109.47369 * 59.99942 * 12 11 10 36 36 H 0.97001 * 119.99787 * 0.02562 * 13 12 11 37 37 H 1.07996 * 120.41554 * 180.27131 * 18 17 16 38 38 H 1.07994 * 120.74702 * 179.75559 * 19 18 17 39 39 H 1.08002 * 120.41539 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.46958 * 143.95459 * 22 9 7 41 41 H 1.09008 * 109.46970 * 23.95747 * 22 9 7 42 42 H 1.08002 * 120.78993 * 359.96923 * 24 23 22 43 43 H 1.08005 * 120.41676 * 179.72448 * 25 24 23 44 44 H 1.08001 * 119.62136 * 180.02562 * 26 25 24 45 45 H 1.07998 * 119.62133 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0333 -1.2352 -0.3439 9 7 1.3977 -2.3463 0.4377 10 6 1.6897 -3.6271 -0.2106 11 6 0.7106 -3.8492 -1.3651 12 6 1.0160 -5.1866 -2.0427 13 7 0.0781 -5.3996 -3.1478 14 6 0.1584 -6.5195 -3.8933 15 8 1.0079 -7.3524 -3.6487 16 6 -0.7930 -6.7357 -5.0134 17 7 -1.7172 -5.8198 -5.2620 18 6 -2.5755 -5.9776 -6.2538 19 6 -2.5069 -7.1253 -7.0315 20 6 -1.5294 -8.0662 -6.7390 21 7 -0.6999 -7.8423 -5.7354 22 6 0.4504 -2.2893 1.5538 23 6 1.1628 -2.6366 2.8355 24 6 1.1409 -3.9353 3.3213 25 6 1.8058 -4.2074 4.5069 26 6 2.4682 -3.1838 5.1580 27 7 2.4717 -1.9613 4.6642 28 6 1.8500 -1.6659 3.5391 29 1 -0.4850 0.8401 -0.0004 30 1 2.7093 -3.6151 -0.5961 31 1 1.5850 -4.4338 0.5148 32 1 -0.3089 -3.8612 -0.9798 33 1 0.8153 -3.0425 -2.0907 34 1 2.0355 -5.1742 -2.4281 35 1 0.9116 -5.9935 -1.3174 36 1 -0.6002 -4.7343 -3.3433 37 1 -3.3239 -5.2253 -6.4541 38 1 -3.1983 -7.2823 -7.8461 39 1 -1.4479 -8.9701 -7.3244 40 1 -0.3565 -3.0016 1.3821 41 1 0.0373 -1.2834 1.6287 42 1 0.6145 -4.7151 2.7910 43 1 1.8059 -5.2067 4.9168 44 1 2.9890 -3.3877 6.0820 45 1 1.8746 -0.6529 3.1658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230876372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 52.520106 kcal Electronic energy + Delta-G solvation = -27993.740193 eV Core-core repulsion = 24011.398042 eV Total energy + Delta-G solvation = -3982.342151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25245 -40.89043 -40.37286 -38.04090 -36.40469 -34.90195 -33.90944 -33.70801 -33.12013 -32.51986 -31.14166 -27.67237 -27.53845 -25.99564 -25.48350 -24.26102 -23.98932 -22.80176 -22.17717 -21.61334 -19.40832 -18.79310 -18.64069 -17.76554 -17.23328 -17.01271 -16.99836 -16.82418 -16.54599 -16.14421 -16.02701 -15.76662 -15.45589 -15.34951 -14.81278 -14.68982 -14.49348 -14.38040 -14.32410 -13.82744 -13.50598 -13.34255 -12.93867 -12.78278 -12.68239 -12.39811 -12.33431 -12.26347 -12.06584 -11.99381 -11.81515 -11.46392 -11.27175 -10.77019 -10.58058 -10.57150 -10.40158 -10.23230 -10.18287 -9.72216 -8.60655 -7.87146 -5.41420 -0.62182 0.07484 0.37995 0.52320 1.43881 1.49724 1.52669 1.57074 1.71282 2.50480 2.78749 2.86639 3.01387 3.24857 3.29595 3.65403 3.70298 3.73627 3.88813 4.09570 4.10214 4.15108 4.21246 4.28859 4.32865 4.37815 4.39053 4.53932 4.66989 4.72685 4.77150 4.81918 4.91988 5.05771 5.08165 5.27957 5.28367 5.33657 5.35405 5.49989 5.55266 5.70843 5.74571 5.88921 6.00480 6.27879 6.46722 6.83156 7.01672 7.15428 7.19460 7.83115 8.35276 9.11699 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.002435 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.571863 B =11496.513531 C =13193.673696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.020 4.020 3 Si 0.940 3.060 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.263 4.263 8 H 0.050 0.950 9 N -0.585 5.585 10 C 0.152 3.848 11 C -0.123 4.123 12 C 0.130 3.870 13 N -0.694 5.694 14 C 0.575 3.425 15 O -0.552 6.552 16 C 0.256 3.744 17 N -0.509 5.509 18 C 0.133 3.867 19 C -0.177 4.177 20 C 0.130 3.870 21 N -0.507 5.507 22 C 0.189 3.811 23 C -0.137 4.137 24 C -0.083 4.083 25 C -0.164 4.164 26 C 0.068 3.932 27 N -0.516 5.516 28 C 0.090 3.910 29 H 0.253 0.747 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.417 0.583 37 H 0.213 0.787 38 H 0.204 0.796 39 H 0.210 0.790 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.167 0.833 44 H 0.179 0.821 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -14.577 -8.931 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.219 4.219 3 Si 0.768 3.232 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.394 4.394 8 H 0.068 0.932 9 N -0.304 5.304 10 C 0.025 3.975 11 C -0.164 4.164 12 C 0.007 3.993 13 N -0.346 5.346 14 C 0.358 3.642 15 O -0.428 6.428 16 C -0.014 4.014 17 N -0.227 5.227 18 C -0.032 4.032 19 C -0.198 4.198 20 C -0.035 4.035 21 N -0.223 5.223 22 C 0.063 3.937 23 C -0.142 4.142 24 C -0.110 4.110 25 C -0.184 4.184 26 C -0.090 4.090 27 N -0.225 5.225 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.255 0.745 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.227 0.773 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.196 0.804 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.808 -14.204 -7.538 17.462 hybrid contribution -0.810 0.881 -1.347 1.802 sum -7.618 -13.323 -8.885 17.734 Atomic orbital electron populations 1.70075 1.06254 1.26069 1.52333 1.25553 0.95500 1.00578 1.00250 0.85730 0.78616 0.81201 0.77635 1.21077 1.21557 1.20473 1.19118 0.93977 0.86933 1.39342 0.93220 1.43861 1.51022 1.03441 1.32047 1.20872 0.96177 0.87711 0.92710 1.22126 1.01098 0.94203 0.98963 1.21414 0.92401 0.97970 0.87538 1.45884 1.35843 1.20957 1.31932 1.17688 0.82989 0.82184 0.81369 1.90751 1.36901 1.45140 1.70005 1.22442 0.94241 0.88598 0.96079 1.68300 1.04458 1.30167 1.19778 1.24121 0.94273 0.97397 0.87431 1.23720 0.99857 0.94320 1.01950 1.24135 0.88280 1.00330 0.90758 1.68184 1.26981 1.20276 1.06822 1.19697 0.89897 1.01905 0.82221 1.22035 0.99263 0.94797 0.98090 1.21769 0.97683 0.95648 0.95868 1.22425 0.98225 1.01864 0.95862 1.23203 0.97516 0.87866 1.00400 1.67603 1.18573 1.23451 1.12849 1.22375 0.93991 0.99549 0.90752 0.93760 0.93976 0.92397 0.92305 0.93216 0.91837 0.90856 0.74550 0.77063 0.77885 0.77294 0.93869 0.90740 0.83611 0.81544 0.80378 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.06 11.46 21.65 0.25 -48.81 16 2 C -0.02 -1.06 4.90 84.86 0.42 -0.65 16 3 Si 0.94 43.39 29.61 68.60 2.03 45.42 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.26 -13.63 9.47 84.03 0.80 -12.83 16 8 H 0.05 2.65 7.92 -2.91 -0.02 2.63 16 9 N -0.58 -26.68 2.42 -706.34 -1.71 -28.39 16 10 C 0.15 5.75 5.68 86.38 0.49 6.24 16 11 C -0.12 -4.28 5.65 30.59 0.17 -4.11 16 12 C 0.13 3.98 5.67 86.38 0.49 4.47 16 13 N -0.69 -20.71 5.54 -465.30 -2.58 -23.29 16 14 C 0.58 18.86 7.85 86.99 0.68 19.54 16 15 O -0.55 -21.63 16.86 -3.58 -0.06 -21.69 16 16 C 0.26 7.10 7.60 137.69 1.05 8.15 16 17 N -0.51 -11.37 9.58 -189.09 -1.81 -13.18 16 18 C 0.13 1.65 11.30 84.79 0.96 2.61 16 19 C -0.18 -1.36 10.18 22.54 0.23 -1.13 16 20 C 0.13 1.76 11.30 84.79 0.96 2.72 16 21 N -0.51 -12.90 10.13 -189.08 -1.92 -14.81 16 22 C 0.19 8.24 5.38 85.63 0.46 8.70 16 23 C -0.14 -5.33 5.47 -19.77 -0.11 -5.44 16 24 C -0.08 -2.56 9.77 22.47 0.22 -2.34 16 25 C -0.16 -4.28 10.11 22.36 0.23 -4.06 16 26 C 0.07 1.99 11.18 84.69 0.95 2.93 16 27 N -0.52 -19.55 10.36 -195.84 -2.03 -21.58 16 28 C 0.09 3.73 10.88 84.67 0.92 4.66 16 29 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.04 1.63 8.04 -2.38 -0.02 1.61 16 31 H 0.06 1.95 8.00 -2.39 -0.02 1.93 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.42 11.58 7.78 -92.71 -0.72 10.86 16 37 H 0.21 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.20 -0.47 8.06 -2.91 -0.02 -0.49 16 39 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 41 H 0.07 3.77 5.48 -2.38 -0.01 3.76 16 42 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.12 5.68 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -74.51 392.24 1.37 -73.14 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.29 Total: 23.73 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 8.91 Total: 29.47 kcal Atomic # 7 Polarization: -140.27 SS G_CDS: -9.80 Total: -150.06 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.51 1.37 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230876372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.656 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds